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  Home > Genomes > Rattus norvegicus 69_3.4 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Rattus norvegicus 69_3.4

Assignment details

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Rattus norvegicus 69_3.4 has 203 significant domains in 51 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000000200   0.000000746   530-569   LDL receptor-like module  
  0.00000157   494-525   LDL receptor-like module  
  0.0000262   459-492   LDL receptor-like module  
ENSRNOP00000001197   0.00000000393   23-63   LDL receptor-like module  
ENSRNOP00000001540   0.0000000124   92-130   LDL receptor-like module  
ENSRNOP00000002713   0.00000000471   111-150   LDL receptor-like module  
ENSRNOP00000005668   0.0000000000288   450-488   LDL receptor-like module  
  0.00000000131   164-200   LDL receptor-like module  
  0.00000013   411-449   LDL receptor-like module  
  0.000000183   211-254   LDL receptor-like module  
  0.000000759   374-411   LDL receptor-like module  
ENSRNOP00000006812   0.0000000000262   28-64   LDL receptor-like module  
  0.000000000484   69-106   LDL receptor-like module  
  0.000000000511   109-146   LDL receptor-like module  
ENSRNOP00000009067   0.0000000000249   50-87   LDL receptor-like module  
  0.000000000236   127-163   LDL receptor-like module  
ENSRNOP00000009139   0.000000000471   461-498   LDL receptor-like module  
  0.000000000877   497-532   LDL receptor-like module  
  0.0000000017   426-461   LDL receptor-like module  
  0.000000968   537-577   LDL receptor-like module  
ENSRNOP00000010100   0.000000223   123-163   LDL receptor-like module  
ENSRNOP00000015468   0.0000000000288   397-434   LDL receptor-like module  
  0.0000000000497   140-177   LDL receptor-like module  
  0.000183   328-352   LDL receptor-like module  
  0.00471   355-396   LDL receptor-like module  
ENSRNOP00000017223   0.00000000262   312-350   LDL receptor-like module  
ENSRNOP00000018545   0.0000000654   113-145   LDL receptor-like module  
ENSRNOP00000019181   0.00000000262   237-274   LDL receptor-like module  
ENSRNOP00000019384   0.0000000327   291-327   LDL receptor-like module  
ENSRNOP00000021353   0.0000000000288   264-304   LDL receptor-like module  
  0.000000000419   228-266   LDL receptor-like module  
  0.000000000497   143-183   LDL receptor-like module  
  0.000000000537   309-345   LDL receptor-like module  
  0.000000000615   66-105   LDL receptor-like module  
  0.00000000471   105-142   LDL receptor-like module  
  0.00000000942   187-225   LDL receptor-like module  
  0.00000183   26-68   LDL receptor-like module  
ENSRNOP00000022213   0.000000000458   1297-1333   LDL receptor-like module  
  0.000000000681   1335-1370   LDL receptor-like module  
  0.00000000183   1256-1296   LDL receptor-like module  
ENSRNOP00000029579   0.000000000144   202-238   LDL receptor-like module  
  0.000000000249   253-289   LDL receptor-like module  
  0.000000000419   42-78   LDL receptor-like module  
  0.000000000458   162-198   LDL receptor-like module  
  0.000000000956   81-119   LDL receptor-like module  
  0.0000000017   293-329   LDL receptor-like module  
  0.0000000419   118-161   LDL receptor-like module  
  0.00000017   333-371   LDL receptor-like module  
ENSRNOP00000029891   0.00000000288   138-173   LDL receptor-like module  
ENSRNOP00000030131   0.000000353   98-130   LDL receptor-like module  
ENSRNOP00000032881   0.00000000916   260-295   LDL receptor-like module  
  0.0000000759   224-257   LDL receptor-like module  
ENSRNOP00000033541   0.000000236   26-63   LDL receptor-like module  
ENSRNOP00000034210   0.0000000000458   849-891   LDL receptor-like module  
  0.000000000144   3570-3610   LDL receptor-like module  
  0.00000000017   930-969   LDL receptor-like module  
  0.000000000223   3654-3699   LDL receptor-like module  
  0.000000000314   3488-3528   LDL receptor-like module  
  0.000000000314   3612-3648   LDL receptor-like module  
  0.00000000034   25-64   LDL receptor-like module  
  0.000000000393   1014-1051   LDL receptor-like module  
  0.000000000393   3370-3410   LDL receptor-like module  
  0.000000000419   890-932   LDL receptor-like module  
  0.000000000445   2695-2731   LDL receptor-like module  
  0.000000000563   975-1012   LDL receptor-like module  
  0.000000000798   3532-3571   LDL receptor-like module  
  0.000000000942   1058-1098   LDL receptor-like module  
  0.000000000969   2561-2601   LDL receptor-like module  
  0.0000000034   3449-3486   LDL receptor-like module  
  0.0000000034   2734-2768   LDL receptor-like module  
  0.00000000537   2816-2852   LDL receptor-like module  
  0.00000000733   2854-2893   LDL receptor-like module  
  0.0000000107   3412-3450   LDL receptor-like module  
  0.0000000124   3332-3367   LDL receptor-like module  
  0.0000000144   2601-2640   LDL receptor-like module  
  0.0000000209   2774-2807   LDL receptor-like module  
  0.000000089   3742-3777   LDL receptor-like module  
  0.000000089   2525-2562   LDL receptor-like module  
  0.000000111   72-106   LDL receptor-like module  
  0.000000458   1144-1179   LDL receptor-like module  
  0.000000563   1107-1141   LDL receptor-like module  
  0.00000126   2660-2690   LDL receptor-like module  
  0.0000275   3696-3732   LDL receptor-like module  
ENSRNOP00000035931   0.000000000144   111-155   LDL receptor-like module  
  0.00000000111   204-242   LDL receptor-like module  
  0.00000000615   245-281   LDL receptor-like module  
  0.0000000249   161-196   LDL receptor-like module  
  0.000000034   1-37   LDL receptor-like module  
  0.0000000694   84-116   LDL receptor-like module  
  0.000000131   39-77   LDL receptor-like module  
ENSRNOP00000036229   0.00000000000275   234-273   LDL receptor-like module  
  0.00000000000759   31-68   LDL receptor-like module  
  0.0000000000419   272-312   LDL receptor-like module  
  0.000000000157   148-188   LDL receptor-like module  
  0.000000000353   70-108   LDL receptor-like module  
  0.000000000668   187-225   LDL receptor-like module  
  0.00000000262   107-149   LDL receptor-like module  
  0.0000000327   318-355   LDL receptor-like module  
ENSRNOP00000037189   0.00000000144   1567-1604   LDL receptor-like module  
  0.00000000236   1420-1457   LDL receptor-like module  
  0.0000000209   2447-2483   LDL receptor-like module  
  0.0000000236   1380-1416   LDL receptor-like module  
  0.0000000249   1457-1492   LDL receptor-like module  
  0.0000000393   1494-1533   LDL receptor-like module  
  0.0000000668   2387-2426   LDL receptor-like module  
  0.000000126   2233-2270   LDL receptor-like module  
  0.00000236   1607-1644   LDL receptor-like module  
  0.0000759   1659-1685   LDL receptor-like module  
ENSRNOP00000039958   0.0000000000327   18-63   LDL receptor-like module  
  0.0000000000524   61-101   LDL receptor-like module  
  0.000000000497   146-184   LDL receptor-like module  
  0.00000000089   193-229   LDL receptor-like module  
  0.00000000109   106-144   LDL receptor-like module  
  0.00000017   275-311   LDL receptor-like module  
  0.000000209   239-272   LDL receptor-like module  
  0.0089   2-22   LDL receptor-like module  
ENSRNOP00000040527   0.0000000000249   490-526   LDL receptor-like module  
  0.0000000000589   618-656   LDL receptor-like module  
  0.00000000017   211-255   LDL receptor-like module  
  0.00000000017   532-576   LDL receptor-like module  
  0.000000000183   334-370   LDL receptor-like module  
  0.000000000367   450-488   LDL receptor-like module  
  0.000000000393   411-446   LDL receptor-like module  
  0.000000000956   368-408   LDL receptor-like module  
  0.00000000113   174-209   LDL receptor-like module  
  0.0000000017   294-330   LDL receptor-like module  
  0.00000000223   253-290   LDL receptor-like module  
  0.000000301   578-610   LDL receptor-like module  
ENSRNOP00000041453   0.000000000017   471-509   LDL receptor-like module  
  0.00000119   547-586   LDL receptor-like module  
  0.000196   507-543   LDL receptor-like module  
ENSRNOP00000042615   0.000000000038   475-514   LDL receptor-like module  
  0.000017   17-54   LDL receptor-like module  
ENSRNOP00000042758   0.0000000000183   25-67   LDL receptor-like module  
ENSRNOP00000043580   0.00000000000969   91-133   LDL receptor-like module  
  0.00000000000969   1256-1297   LDL receptor-like module  
  0.000000000017   1138-1175   LDL receptor-like module  
  0.0000000000275   16-52   LDL receptor-like module  
  0.0000000000288   1096-1134   LDL receptor-like module  
  0.000000000209   1053-1093   LDL receptor-like module  
  0.000000000236   1011-1049   LDL receptor-like module  
  0.0000000017   1176-1214   LDL receptor-like module  
  0.00000000183   211-249   LDL receptor-like module  
  0.00000000262   1220-1255   LDL receptor-like module  
  0.00000000458   171-207   LDL receptor-like module  
  0.00000000772   48-91   LDL receptor-like module  
  0.0000000131   1301-1337   LDL receptor-like module  
  0.000000055   136-170   LDL receptor-like module  
ENSRNOP00000044873   0.0000000000511   103-143   LDL receptor-like module  
  0.0000000000511   195-233   LDL receptor-like module  
  0.0000000000982   26-70   LDL receptor-like module  
  0.000000000144   142-182   LDL receptor-like module  
  0.000000000157   62-104   LDL receptor-like module  
  0.000000000825   231-272   LDL receptor-like module  
  0.0000000641   275-312   LDL receptor-like module  
ENSRNOP00000046830   0.0000000196   53-91   LDL receptor-like module  
ENSRNOP00000048627   0.0000000000183   25-67   LDL receptor-like module  
ENSRNOP00000049534   0.000000275   173-210   LDL receptor-like module  
ENSRNOP00000052803   0.000000000262   345-389   LDL receptor-like module  
  0.000000000654   300-339   LDL receptor-like module  
  0.000000000864   260-297   LDL receptor-like module  
  0.0000000445   173-213   LDL receptor-like module  
ENSRNOP00000054184   0.0000000654   84-118   LDL receptor-like module  
  0.0000406   167-208   LDL receptor-like module  
  0.0000942   131-160   LDL receptor-like module  
ENSRNOP00000056477   0.000000000117   278-319   LDL receptor-like module  
  0.000000000223   413-449   LDL receptor-like module  
  0.000000000903   319-358   LDL receptor-like module  
  0.00000000851   372-408   LDL receptor-like module  
  0.000000127   243-280   LDL receptor-like module  
ENSRNOP00000056479   0.0000000000157   42-78   LDL receptor-like module  
  0.000000000109   85-120   LDL receptor-like module  
  0.00000000196   122-162   LDL receptor-like module  
  0.00000000249   2-39   LDL receptor-like module  
  0.0000000575   171-204   LDL receptor-like module  
ENSRNOP00000056560   0.0000000038   263-300   LDL receptor-like module  
ENSRNOP00000056722   0.00000000000275   1322-1360   LDL receptor-like module  
  0.0000000000131   1059-1098   LDL receptor-like module  
  0.000000000038   1100-1138   LDL receptor-like module  
  0.000000000144   1229-1265   LDL receptor-like module  
  0.00000000128   1143-1176   LDL receptor-like module  
  0.00000000209   1276-1309   LDL receptor-like module  
  0.0000000103   1376-1413   LDL receptor-like module  
  0.0000000393   1416-1455   LDL receptor-like module  
  0.00000223   1180-1216   LDL receptor-like module  
ENSRNOP00000057091   0.0000373   76-117   LDL receptor-like module  
ENSRNOP00000057998   0.0000000484   49-89   LDL receptor-like module  
  0.000262   101-131   LDL receptor-like module  
  0.0288   139-176   LDL receptor-like module  
ENSRNOP00000059621   0.0000000000183   3-36   LDL receptor-like module  
ENSRNOP00000061308   0.00000000393   23-63   LDL receptor-like module  
ENSRNOP00000061475   0.00000000759   296-332   LDL receptor-like module  
ENSRNOP00000061602   0.0000000034   720-758   LDL receptor-like module  
  0.00000000798   646-683   LDL receptor-like module  
  0.0000000131   370-409   LDL receptor-like module  
  0.0000000183   412-445   LDL receptor-like module  
  0.0000000196   335-372   LDL receptor-like module  
  0.0000000654   448-480   LDL receptor-like module  
  0.00000314   686-718   LDL receptor-like module  
ENSRNOP00000062063   0.00000223   189-229   LDL receptor-like module  
ENSRNOP00000062120   0.00000000825   225-266   LDL receptor-like module  
  0.0000314   451-488   LDL receptor-like module  
  0.0157   31-52   LDL receptor-like module  
ENSRNOP00000063031   0.0000000000484   475-512   LDL receptor-like module  
  0.000000000275   185-222   LDL receptor-like module  
  0.00000000117   231-270   LDL receptor-like module  
  0.00000249   436-473   LDL receptor-like module  
  0.00319   386-434   LDL receptor-like module  
ENSRNOP00000063261   0.00000000144   1307-1345   LDL receptor-like module  
  0.00000000236   1228-1268   LDL receptor-like module  
  0.0000000038   1269-1305   LDL receptor-like module  
 
Weak hits:
ENSRNOP00000011630   0.000159   9-41   LDL receptor-like module  
ENSRNOP00000018009   0.000102   67-107   LDL receptor-like module  
  0.000196   31-65   LDL receptor-like module  
ENSRNOP00000021949   0.000144   175-199   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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