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  Home > Genomes > Pteropus vampyrus 69_1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Pteropus vampyrus 69_1

Assignment details

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Pteropus vampyrus 69_1 has 203 significant domains in 43 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPVAP00000000065   0.00000113   153-192   LDL receptor-like module  
ENSPVAP00000000156   0.0000000000812   1271-1315   LDL receptor-like module  
  0.000000000157   2734-2775   LDL receptor-like module  
  0.000000000262   3718-3753   LDL receptor-like module  
  0.00000000038   1066-1106   LDL receptor-like module  
  0.000000000406   3583-3627   LDL receptor-like module  
  0.000000000484   3625-3664   LDL receptor-like module  
  0.00000000055   3791-3831   LDL receptor-like module  
  0.000000000615   2857-2894   LDL receptor-like module  
  0.000000000615   1148-1185   LDL receptor-like module  
  0.000000000641   102-143   LDL receptor-like module  
  0.000000000956   26-62   LDL receptor-like module  
  0.00000000117   3067-3107   LDL receptor-like module  
  0.00000000131   2984-3025   LDL receptor-like module  
  0.00000000236   3028-3066   LDL receptor-like module  
  0.00000000249   2899-2937   LDL receptor-like module  
  0.00000000288   1230-1266   LDL receptor-like module  
  0.00000000301   1022-1060   LDL receptor-like module  
  0.00000000301   3839-3883   LDL receptor-like module  
  0.00000000314   3923-3960   LDL receptor-like module  
  0.0000000034   182-217   LDL receptor-like module  
  0.00000000445   264-300   LDL receptor-like module  
  0.00000000537   2698-2742   LDL receptor-like module  
  0.00000000641   3751-3791   LDL receptor-like module  
  0.00000000759   3546-3583   LDL receptor-like module  
  0.00000000825   61-101   LDL receptor-like module  
  0.0000000419   1186-1223   LDL receptor-like module  
  0.0000000825   2812-2858   LDL receptor-like module  
  0.000000115   2941-2984   LDL receptor-like module  
  0.000000223   3880-3918   LDL receptor-like module  
  0.000000314   1311-1347   LDL receptor-like module  
  0.000000406   3674-3714   LDL receptor-like module  
  0.0000017   147-179   LDL receptor-like module  
  0.0000034   2782-2816   LDL receptor-like module  
  0.0000055   3522-3543   LDL receptor-like module  
ENSPVAP00000000704   0.0000000262   69-104   LDL receptor-like module  
ENSPVAP00000000882   0.0000417   79-119   LDL receptor-like module  
ENSPVAP00000000905   0.0000000157   141-173   LDL receptor-like module  
ENSPVAP00000000996   0.00000182   103-134   LDL receptor-like module  
ENSPVAP00000001496   0.0000000011   1322-1358   LDL receptor-like module  
  0.00000000471   1284-1320   LDL receptor-like module  
  0.00000000576   1244-1282   LDL receptor-like module  
ENSPVAP00000001560   0.0000000000301   25-67   LDL receptor-like module  
ENSPVAP00000001745   0.00000000196   336-375   LDL receptor-like module  
ENSPVAP00000003743   0.0000000000537   821-863   LDL receptor-like module  
  0.000000000131   3542-3582   LDL receptor-like module  
  0.00000000017   902-941   LDL receptor-like module  
  0.000000000249   3584-3620   LDL receptor-like module  
  0.000000000288   3626-3671   LDL receptor-like module  
  0.00000000038   2666-2704   LDL receptor-like module  
  0.000000000393   986-1023   LDL receptor-like module  
  0.000000000393   3460-3500   LDL receptor-like module  
  0.000000000393   3342-3382   LDL receptor-like module  
  0.000000000419   862-904   LDL receptor-like module  
  0.000000000563   947-984   LDL receptor-like module  
  0.000000000956   3504-3543   LDL receptor-like module  
  0.00000000127   3-43   LDL receptor-like module  
  0.00000000209   1030-1070   LDL receptor-like module  
  0.00000000275   2877-2913   LDL receptor-like module  
  0.00000000288   2705-2740   LDL receptor-like module  
  0.00000000327   3421-3458   LDL receptor-like module  
  0.00000000353   2571-2612   LDL receptor-like module  
  0.00000000628   2788-2824   LDL receptor-like module  
  0.00000000641   2533-2573   LDL receptor-like module  
  0.00000000746   2746-2780   LDL receptor-like module  
  0.00000000759   2826-2865   LDL receptor-like module  
  0.0000000106   3384-3422   LDL receptor-like module  
  0.0000000825   3715-3749   LDL receptor-like module  
  0.000000144   2498-2534   LDL receptor-like module  
  0.00000038   48-83   LDL receptor-like module  
  0.000000393   1116-1151   LDL receptor-like module  
  0.000000576   3309-3340   LDL receptor-like module  
  0.000000668   1079-1113   LDL receptor-like module  
  0.00000106   2631-2662   LDL receptor-like module  
  0.0000209   3668-3704   LDL receptor-like module  
ENSPVAP00000004161   0.000000851   80-114   LDL receptor-like module  
  0.0000131   127-157   LDL receptor-like module  
  0.0000249   160-203   LDL receptor-like module  
ENSPVAP00000004244   0.0000000209   147-185   LDL receptor-like module  
ENSPVAP00000004247   0.0000000000419   1412-1449   LDL receptor-like module  
  0.0000000000537   1191-1229   LDL receptor-like module  
  0.0000000000877   1318-1355   LDL receptor-like module  
  0.000000000668   1152-1190   LDL receptor-like module  
  0.00000000128   1071-1109   LDL receptor-like module  
  0.00000000144   1365-1399   LDL receptor-like module  
  0.0000000034   1234-1267   LDL receptor-like module  
  0.0000000144   1466-1503   LDL receptor-like module  
  0.0000000838   1508-1545   LDL receptor-like module  
  0.000000144   1112-1150   LDL receptor-like module  
  0.0000034   1271-1306   LDL receptor-like module  
ENSPVAP00000004426   0.000000589   230-265   LDL receptor-like module  
ENSPVAP00000004433   0.000000000458   283-319   LDL receptor-like module  
  0.000000000537   324-360   LDL receptor-like module  
  0.00000000288   367-410   LDL receptor-like module  
  0.0000000668   195-234   LDL receptor-like module  
ENSPVAP00000004935   0.0000000497   40-76   LDL receptor-like module  
ENSPVAP00000005150   0.0000497   107-143   LDL receptor-like module  
ENSPVAP00000005315   0.0000000484   260-296   LDL receptor-like module  
  0.00000458   422-456   LDL receptor-like module  
ENSPVAP00000005659   0.000000000942   264-302   LDL receptor-like module  
  0.0000000524   227-261   LDL receptor-like module  
ENSPVAP00000005915   0.000000000694   1301-1339   LDL receptor-like module  
  0.00000000127   1222-1262   LDL receptor-like module  
  0.00000000367   1263-1299   LDL receptor-like module  
ENSPVAP00000007236   0.000000862   93-133   LDL receptor-like module  
ENSPVAP00000007238   0.00000055   123-155   LDL receptor-like module  
ENSPVAP00000007352   0.0000000000471   98-137   LDL receptor-like module  
  0.0000000000877   188-225   LDL receptor-like module  
  0.000000000131   135-175   LDL receptor-like module  
  0.000000000563   223-264   LDL receptor-like module  
ENSPVAP00000007379   0.00000000183   40-79   LDL receptor-like module  
ENSPVAP00000008877   0.000000000017   449-487   LDL receptor-like module  
  0.00000000131   164-200   LDL receptor-like module  
  0.000000128   410-448   LDL receptor-like module  
  0.00000017   211-253   LDL receptor-like module  
  0.000000746   373-410   LDL receptor-like module  
ENSPVAP00000009079   0.0000000327   225-261   LDL receptor-like module  
  0.0000615   453-492   LDL receptor-like module  
  0.00107   19-51   LDL receptor-like module  
ENSPVAP00000009086   0.0000000000288   123-166   LDL receptor-like module  
  0.000000000157   53-87   LDL receptor-like module  
ENSPVAP00000010118   0.000000000183   444-482   LDL receptor-like module  
  0.000000000563   298-335   LDL receptor-like module  
  0.000000000916   374-412   LDL receptor-like module  
  0.0000000196   334-369   LDL receptor-like module  
  0.00000393   568-604   LDL receptor-like module  
  0.0000694   485-523   LDL receptor-like module  
  0.0000746   259-294   LDL receptor-like module  
ENSPVAP00000010802   0.00000000196   304-343   LDL receptor-like module  
  0.00000000563   346-378   LDL receptor-like module  
  0.0000000982   580-615   LDL receptor-like module  
  0.0000000982   653-691   LDL receptor-like module  
  0.00000223   619-651   LDL receptor-like module  
  0.00249   269-293   LDL receptor-like module  
ENSPVAP00000010942   0.0000000000511   452-489   LDL receptor-like module  
  0.00000000017   164-201   LDL receptor-like module  
  0.00000000106   210-249   LDL receptor-like module  
  0.00000262   413-450   LDL receptor-like module  
  0.00196   364-411   LDL receptor-like module  
ENSPVAP00000011290   0.000036   432-464   LDL receptor-like module  
ENSPVAP00000011526   0.00000367   286-318   LDL receptor-like module  
ENSPVAP00000012056   0.00000000183   372-407   LDL receptor-like module  
  0.00000000209   444-478   LDL receptor-like module  
  0.00000000576   407-444   LDL receptor-like module  
  0.000000266   483-523   LDL receptor-like module  
ENSPVAP00000012381   0.000000000223   159-194   LDL receptor-like module  
  0.000000000458   286-325   LDL receptor-like module  
  0.00000000124   39-75   LDL receptor-like module  
  0.00000000209   78-116   LDL receptor-like module  
  0.00000000223   254-287   LDL receptor-like module  
  0.00000000654   198-233   LDL receptor-like module  
  0.0000000537   119-157   LDL receptor-like module  
ENSPVAP00000012998   0.0000000000262   395-432   LDL receptor-like module  
  0.000000000236   134-171   LDL receptor-like module  
  0.0000236   325-350   LDL receptor-like module  
  0.00707   352-393   LDL receptor-like module  
ENSPVAP00000013587   0.0000000000563   639-677   LDL receptor-like module  
  0.000000445   183-220   LDL receptor-like module  
ENSPVAP00000014034   0.0000144   67-107   LDL receptor-like module  
  0.000236   30-65   LDL receptor-like module  
ENSPVAP00000014333   0.000000000131   875-920   LDL receptor-like module  
  0.00000000017   918-958   LDL receptor-like module  
  0.000000000275   840-879   LDL receptor-like module  
  0.00000000034   3623-3659   LDL receptor-like module  
  0.000000000393   3749-3789   LDL receptor-like module  
  0.000000000432   2884-2925   LDL receptor-like module  
  0.000000000524   2753-2789   LDL receptor-like module  
  0.000000000694   3461-3501   LDL receptor-like module  
  0.000000000733   3583-3621   LDL receptor-like module  
  0.000000000838   963-1001   LDL receptor-like module  
  0.00000000119   1002-1038   LDL receptor-like module  
  0.00000000157   1050-1086   LDL receptor-like module  
  0.00000000301   2796-2831   LDL receptor-like module  
  0.00000000419   2712-2750   LDL receptor-like module  
  0.00000000524   2539-2580   LDL receptor-like module  
  0.00000000668   3307-3342   LDL receptor-like module  
  0.00000000942   3426-3462   LDL receptor-like module  
  0.0000000144   3385-3422   LDL receptor-like module  
  0.0000000458   2633-2669   LDL receptor-like module  
  0.000000119   2833-2873   LDL receptor-like module  
  0.000000183   3348-3382   LDL receptor-like module  
  0.000000406   2504-2541   LDL receptor-like module  
  0.000000615   1132-1168   LDL receptor-like module  
  0.000000772   1096-1129   LDL receptor-like module  
  0.00000236   74-107   LDL receptor-like module  
  0.00000432   3707-3743   LDL receptor-like module  
  0.0000563   31-67   LDL receptor-like module  
ENSPVAP00000014885   0.000000157   518-557   LDL receptor-like module  
  0.000000563   482-513   LDL receptor-like module  
  0.0000275   447-479   LDL receptor-like module  
ENSPVAP00000014913   0.0000000000327   288-328   LDL receptor-like module  
  0.000000000196   252-290   LDL receptor-like module  
  0.00000000038   167-207   LDL receptor-like module  
  0.000000000537   92-130   LDL receptor-like module  
  0.00000000393   128-166   LDL receptor-like module  
  0.00000000838   211-249   LDL receptor-like module  
  0.00000157   50-92   LDL receptor-like module  
ENSPVAP00000015227   0.00000000000102   31-68   LDL receptor-like module  
  0.00000000000236   234-273   LDL receptor-like module  
  0.0000000000484   272-312   LDL receptor-like module  
  0.0000000000681   149-188   LDL receptor-like module  
  0.00000000017   70-109   LDL receptor-like module  
  0.00000000301   187-225   LDL receptor-like module  
  0.00000000353   107-149   LDL receptor-like module  
  0.0000000445   318-355   LDL receptor-like module  
ENSPVAP00000015808   0.0000000000131   210-248   LDL receptor-like module  
  0.000013   246-282   LDL receptor-like module  
ENSPVAP00000015948   0.000000157   21-58   LDL receptor-like module  
 
Weak hits:
ENSPVAP00000003365   0.000157   138-162   LDL receptor-like module  
ENSPVAP00000007096   0.000419   168-201   LDL receptor-like module  
ENSPVAP00000012290   0.000951   281-314   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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