SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


alpha-D-mannose-specific plant lectins superfamily domain assignments
in
Oryza glumaepatula 22

Assignment details

(show help)


Oryza glumaepatula 22 has 178 significant domains in 145 proteins.

     

Sequence ID   Evalue   Region   Family  
OGLUM01G03870.1   7.72e-23   64-168,200-231   alpha-D-mannose-specific plant lectins  
OGLUM01G07670.1   3.66e-28   104-180,207-232   alpha-D-mannose-specific plant lectins  
  2.09e-22   829-918,1018-1035   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.1   1.31e-19   760-857   alpha-D-mannose-specific plant lectins  
  0.000000000000209   73-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.2   0.000000000000183   73-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.3   0.000000000000432   73-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.4   0.000000000000144   73-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.5   1.44e-19   859-956   alpha-D-mannose-specific plant lectins  
  0.000000000000222   74-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08820.6   0.00000000000034   73-152   alpha-D-mannose-specific plant lectins  
OGLUM01G08890.1   2.88e-16   1057-1140   alpha-D-mannose-specific plant lectins  
  0.00000000000353   117-202   alpha-D-mannose-specific plant lectins  
OGLUM01G08890.2   0.00000000000183   117-202   alpha-D-mannose-specific plant lectins  
OGLUM01G08890.3   5.63e-17   101-184   alpha-D-mannose-specific plant lectins  
  2.49e-16   884-967   alpha-D-mannose-specific plant lectins  
OGLUM01G08890.4   5.76e-17   101-184   alpha-D-mannose-specific plant lectins  
  2.62e-16   931-1014   alpha-D-mannose-specific plant lectins  
OGLUM01G08900.1   0.00000000000109   124-212   alpha-D-mannose-specific plant lectins  
OGLUM01G22320.1   4.19e-23   85-163,247-262   alpha-D-mannose-specific plant lectins  
OGLUM01G27960.1   8.9e-28   58-152,184-214   alpha-D-mannose-specific plant lectins  
OGLUM01G29760.1   2.62e-27   62-207   alpha-D-mannose-specific plant lectins  
OGLUM01G29770.1   3.93e-27   62-151   alpha-D-mannose-specific plant lectins  
OGLUM01G29780.1   2.09e-27   65-204   alpha-D-mannose-specific plant lectins  
OGLUM01G29800.1   4.58e-28   69-206   alpha-D-mannose-specific plant lectins  
OGLUM01G29810.1   4.58e-30   29-164   alpha-D-mannose-specific plant lectins  
OGLUM01G29840.1   4.19e-28   64-200   alpha-D-mannose-specific plant lectins  
OGLUM01G37530.1   4.84e-27   1563-1672   alpha-D-mannose-specific plant lectins  
  9.95e-24   932-1023,1053-1083   alpha-D-mannose-specific plant lectins  
  8.38e-19   110-211   alpha-D-mannose-specific plant lectins  
OGLUM01G37530.2   4.84e-27   1555-1664   alpha-D-mannose-specific plant lectins  
  9.81e-24   932-1023,1053-1083   alpha-D-mannose-specific plant lectins  
  8.24e-19   110-211   alpha-D-mannose-specific plant lectins  
OGLUM01G37530.3   4.58e-23   932-1023,1053-1083   alpha-D-mannose-specific plant lectins  
  4.19e-19   110-211   alpha-D-mannose-specific plant lectins  
OGLUM01G37530.4   4.32e-23   879-970,1000-1030   alpha-D-mannose-specific plant lectins  
  3.8e-19   110-211   alpha-D-mannose-specific plant lectins  
OGLUM01G37530.5   1.96e-27   318-427   alpha-D-mannose-specific plant lectins  
OGLUM01G37560.1   3.53e-22   76-159,191-222   alpha-D-mannose-specific plant lectins  
OGLUM01G37560.2   3.53e-22   76-159,191-222   alpha-D-mannose-specific plant lectins  
OGLUM01G37560.4   1.57e-22   76-159,191-222   alpha-D-mannose-specific plant lectins  
OGLUM01G37570.1   2.49e-24   74-184   alpha-D-mannose-specific plant lectins  
OGLUM01G39710.1   3.01e-19   87-211   alpha-D-mannose-specific plant lectins  
OGLUM01G42970.1   2.09e-28   74-168,200-230   alpha-D-mannose-specific plant lectins  
OGLUM01G42970.2   1.83e-28   74-168,200-230   alpha-D-mannose-specific plant lectins  
OGLUM01G42970.4   8.24e-28   65-159,192-222   alpha-D-mannose-specific plant lectins  
OGLUM01G42990.1   4.58e-28   82-176,208-238   alpha-D-mannose-specific plant lectins  
OGLUM01G43930.1   2.22e-27   64-206   alpha-D-mannose-specific plant lectins  
  0.0288   212-289   alpha-D-mannose-specific plant lectins  
OGLUM01G44210.1   1.96e-29   77-173,205-236   alpha-D-mannose-specific plant lectins  
OGLUM01G44240.1   2.49e-29   64-161,193-223   alpha-D-mannose-specific plant lectins  
OGLUM01G44280.1   1.16e-27   134-241   alpha-D-mannose-specific plant lectins  
OGLUM01G44280.2   3.53e-30   74-167,199-229   alpha-D-mannose-specific plant lectins  
OGLUM01G48760.2   8.38e-25   110-236   alpha-D-mannose-specific plant lectins  
OGLUM01G48760.3   8.38e-25   110-236   alpha-D-mannose-specific plant lectins  
OGLUM01G48760.4   8.38e-25   110-236   alpha-D-mannose-specific plant lectins  
OGLUM01G49280.1   0.0000000000000445   62-193   alpha-D-mannose-specific plant lectins  
  0.00000055   172-268   alpha-D-mannose-specific plant lectins  
OGLUM02G10030.1   3.14e-21   112-207   alpha-D-mannose-specific plant lectins  
OGLUM02G19140.1   0.0000000000000756   89-172,240-261   alpha-D-mannose-specific plant lectins  
  0.00884   238-300   alpha-D-mannose-specific plant lectins  
OGLUM02G34290.1   1.05e-17   82-203   alpha-D-mannose-specific plant lectins  
OGLUM03G08870.1   2.75e-23   56-169,201-231   alpha-D-mannose-specific plant lectins  
OGLUM03G10110.1   0.000000249   99-195   alpha-D-mannose-specific plant lectins  
OGLUM03G22610.1   6.28e-28   61-203   alpha-D-mannose-specific plant lectins  
  0.0017   214-283   alpha-D-mannose-specific plant lectins  
OGLUM03G23850.1   2.62e-28   77-186   alpha-D-mannose-specific plant lectins  
OGLUM03G39500.5   1.09e-16   131-250   alpha-D-mannose-specific plant lectins  
  0.00000000000222   232-331   alpha-D-mannose-specific plant lectins  
OGLUM03G39500.7   8.77e-17   76-195   alpha-D-mannose-specific plant lectins  
  0.00000000000209   177-276   alpha-D-mannose-specific plant lectins  
OGLUM03G40110.1   4.32e-20   75-193   alpha-D-mannose-specific plant lectins  
  0.056   205-261   alpha-D-mannose-specific plant lectins  
OGLUM04G00120.1   4.19e-25   68-165,197-226   alpha-D-mannose-specific plant lectins  
  2.22e-24   899-1011   alpha-D-mannose-specific plant lectins  
OGLUM04G00120.2   3.01e-25   68-165,197-226   alpha-D-mannose-specific plant lectins  
OGLUM04G00120.3   9.95e-25   177-289   alpha-D-mannose-specific plant lectins  
OGLUM04G03370.1   2.22e-22   61-153,183-216   alpha-D-mannose-specific plant lectins  
  0.0000654   181-260   alpha-D-mannose-specific plant lectins  
OGLUM04G03380.1   2.22e-19   63-216   alpha-D-mannose-specific plant lectins  
  0.00000785   180-269   alpha-D-mannose-specific plant lectins  
OGLUM04G03390.1   3.57e-20   62-215   alpha-D-mannose-specific plant lectins  
OGLUM04G03410.1   4.32e-17   62-212   alpha-D-mannose-specific plant lectins  
OGLUM04G04090.1   1.96e-24   57-157,189-218   alpha-D-mannose-specific plant lectins  
OGLUM04G06650.1   1.7e-26   65-143,239-261   alpha-D-mannose-specific plant lectins  
OGLUM04G06670.1   5.63e-26   116-193,289-306   alpha-D-mannose-specific plant lectins  
OGLUM04G06680.1   1.01e-25   118-194,290-315   alpha-D-mannose-specific plant lectins  
OGLUM04G06700.1   1.09e-26   110-190,286-308   alpha-D-mannose-specific plant lectins  
OGLUM04G06720.1   1.83e-27   806-934   alpha-D-mannose-specific plant lectins  
  1.03e-24   106-181   alpha-D-mannose-specific plant lectins  
OGLUM04G08670.1   1.83e-27   70-169,201-230   alpha-D-mannose-specific plant lectins  
OGLUM04G08880.1   3.53e-18   70-170   alpha-D-mannose-specific plant lectins  
OGLUM04G12070.1   5.76e-31   65-160,192-221   alpha-D-mannose-specific plant lectins  
  0.00000000497   1029-1077   alpha-D-mannose-specific plant lectins  
OGLUM04G12070.2   0.00000000353   594-642   alpha-D-mannose-specific plant lectins  
OGLUM04G12080.1   3.14e-29   62-157,189-222   alpha-D-mannose-specific plant lectins  
OGLUM04G12110.1   6.02e-28   66-160,192-221   alpha-D-mannose-specific plant lectins  
OGLUM04G12160.1   1.7e-27   64-158,190-219   alpha-D-mannose-specific plant lectins  
OGLUM04G15820.1   0.00000000000000497   59-183   alpha-D-mannose-specific plant lectins  
OGLUM04G15830.1   0.000000000000111   59-208   alpha-D-mannose-specific plant lectins  
OGLUM04G18110.1   1.44e-23   78-191   alpha-D-mannose-specific plant lectins  
OGLUM04G26300.1   1.15e-30   55-148,180-210   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.1   2.22e-22   1479-1578   alpha-D-mannose-specific plant lectins  
  3.14e-20   686-769,804-835   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.2   9.95e-23   443-542   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.3   2.22e-29   60-152,184-209   alpha-D-mannose-specific plant lectins  
  1.44e-20   859-942,977-1008   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.4   2.49e-29   60-152,184-209   alpha-D-mannose-specific plant lectins  
  1.57e-20   937-1020,1055-1086   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.5   2.36e-29   60-152,184-209   alpha-D-mannose-specific plant lectins  
  1.57e-20   908-991,1026-1057   alpha-D-mannose-specific plant lectins  
OGLUM04G26320.6   2.22e-29   60-152,184-209   alpha-D-mannose-specific plant lectins  
  1.44e-20   841-924,959-990   alpha-D-mannose-specific plant lectins  
OGLUM04G26370.1   3.53e-32   159-250,282-308   alpha-D-mannose-specific plant lectins  
  4.06e-27   875-993   alpha-D-mannose-specific plant lectins  
OGLUM04G26440.1   1.11e-30   71-179   alpha-D-mannose-specific plant lectins  
OGLUM04G26450.1   6.02e-29   81-196   alpha-D-mannose-specific plant lectins  
OGLUM04G26460.1   0.0000000000000864   81-146   alpha-D-mannose-specific plant lectins  
OGLUM04G26470.1   3.93e-23   436-544   alpha-D-mannose-specific plant lectins  
OGLUM04G26470.2   3.8e-23   436-544   alpha-D-mannose-specific plant lectins  
OGLUM04G26470.3   3.14e-23   312-420   alpha-D-mannose-specific plant lectins  
OGLUM04G27780.1   2.62e-27   66-208   alpha-D-mannose-specific plant lectins  
OGLUM04G27790.1   2.36e-28   66-210   alpha-D-mannose-specific plant lectins  
OGLUM05G04470.1   1.7e-24   729-830,862-888   alpha-D-mannose-specific plant lectins  
  0.000000000746   3-59   alpha-D-mannose-specific plant lectins  
OGLUM05G04470.2   9.42e-25   96-193,225-250   alpha-D-mannose-specific plant lectins  
OGLUM05G04480.1   3.4e-23   83-190   alpha-D-mannose-specific plant lectins  
OGLUM05G17610.1   2.49e-24   60-176   alpha-D-mannose-specific plant lectins  
OGLUM05G23080.1   2.75e-25   76-185   alpha-D-mannose-specific plant lectins  
OGLUM06G04450.1   9.68e-28   102-246   alpha-D-mannose-specific plant lectins  
OGLUM06G04470.1   3.93e-30   75-219   alpha-D-mannose-specific plant lectins  
OGLUM06G04480.1   7.33e-29   64-207   alpha-D-mannose-specific plant lectins  
OGLUM06G04500.1   7.33e-29   64-207   alpha-D-mannose-specific plant lectins  
OGLUM06G04510.1   4.71e-31   66-210   alpha-D-mannose-specific plant lectins  
OGLUM06G16650.1   1.26e-22   198-336   alpha-D-mannose-specific plant lectins  
OGLUM06G19190.1   0.00000000000000314   111-170   alpha-D-mannose-specific plant lectins  
OGLUM06G21310.1   2.49e-25   62-149,176-205   alpha-D-mannose-specific plant lectins  
OGLUM06G22330.1   3.4e-19   62-158,186-221   alpha-D-mannose-specific plant lectins  
  0.00396   181-277   alpha-D-mannose-specific plant lectins  
OGLUM06G26410.1   1.57e-25   83-172,204-236   alpha-D-mannose-specific plant lectins  
OGLUM07G10110.1   1.16e-25   45-136,168-199   alpha-D-mannose-specific plant lectins  
OGLUM07G17800.1   4.71e-24   79-195   alpha-D-mannose-specific plant lectins  
OGLUM07G17830.1   1.7e-21   77-190   alpha-D-mannose-specific plant lectins  
OGLUM07G17850.1   3.6e-19   82-166,201-233   alpha-D-mannose-specific plant lectins  
OGLUM07G17940.1   2.22e-30   80-190   alpha-D-mannose-specific plant lectins  
OGLUM07G17960.1   1.03e-26   60-155,187-218   alpha-D-mannose-specific plant lectins  
OGLUM08G05030.1   1.57e-21   96-186   alpha-D-mannose-specific plant lectins  
OGLUM08G05040.1   0.0000000000000602   451-543   alpha-D-mannose-specific plant lectins  
OGLUM08G05040.2   1.11e-22   444-546,578-593   alpha-D-mannose-specific plant lectins  
OGLUM08G05040.3   0.0000000000000353   400-494   alpha-D-mannose-specific plant lectins  
OGLUM08G07410.1   2.88e-16   63-192   alpha-D-mannose-specific plant lectins  
  0.0000000000236   173-272   alpha-D-mannose-specific plant lectins  
OGLUM08G07480.1   0.00000000000236   126-228   alpha-D-mannose-specific plant lectins  
OGLUM08G07560.1   4.84e-17   63-209   alpha-D-mannose-specific plant lectins  
  0.00000000000497   173-273   alpha-D-mannose-specific plant lectins  
OGLUM09G00890.1   3.93e-19   2-99   alpha-D-mannose-specific plant lectins  
OGLUM09G13070.1   5.37e-18   77-160,187-210   alpha-D-mannose-specific plant lectins  
OGLUM09G19300.1   9.42e-27   223-327,359-389   alpha-D-mannose-specific plant lectins  
OGLUM09G19320.1   5.1e-25   76-194   alpha-D-mannose-specific plant lectins  
  1.44e-24   910-1006,1038-1067   alpha-D-mannose-specific plant lectins  
OGLUM09G19320.2   4.71e-29   59-159,192-221   alpha-D-mannose-specific plant lectins  
OGLUM09G19340.1   2.36e-26   72-182   alpha-D-mannose-specific plant lectins  
OGLUM09G19350.1   1.26e-27   898-993,1025-1054   alpha-D-mannose-specific plant lectins  
  1.7e-27   1704-1802,1835-1866   alpha-D-mannose-specific plant lectins  
  5.23e-27   61-156,188-217   alpha-D-mannose-specific plant lectins  
OGLUM09G19380.1   1.44e-28   118-210,242-271   alpha-D-mannose-specific plant lectins  
OGLUM09G19390.1   4.32e-27   64-158,190-219   alpha-D-mannose-specific plant lectins  
OGLUM10G00060.1   0.00000592   83-163   alpha-D-mannose-specific plant lectins  
  0.00036   208-267   alpha-D-mannose-specific plant lectins  
OGLUM10G02700.1   0.0000000000851   106-203   alpha-D-mannose-specific plant lectins  
OGLUM10G06420.1   4.19e-29   61-155,187-216   alpha-D-mannose-specific plant lectins  
OGLUM10G06440.1   1.22e-29   63-157,189-218   alpha-D-mannose-specific plant lectins  
OGLUM11G01760.1   1.7e-26   582-725   alpha-D-mannose-specific plant lectins  
  3.53e-21   1142-1288   alpha-D-mannose-specific plant lectins  
OGLUM11G02840.1   0.000000000183   91-166,266-291   alpha-D-mannose-specific plant lectins  
OGLUM11G06070.1   1.96e-19   76-178,210-235   alpha-D-mannose-specific plant lectins  
OGLUM12G02410.1   0.0000000000017   71-179   alpha-D-mannose-specific plant lectins  
OGLUM12G02440.1   3.66e-24   959-1098   alpha-D-mannose-specific plant lectins  
OGLUM12G02440.2   0.00000000353   209-268   alpha-D-mannose-specific plant lectins  
OGLUM12G05470.1   1.83e-25   63-203   alpha-D-mannose-specific plant lectins  
OGLUM12G08940.1   9.29e-27   87-196   alpha-D-mannose-specific plant lectins  
OGLUM12G08970.1   9.81e-25   93-206   alpha-D-mannose-specific plant lectins  
OGLUM12G15640.1   5.76e-26   189-322   alpha-D-mannose-specific plant lectins  
OGLUM12G22040.1   0.000000000000785   91-223   alpha-D-mannose-specific plant lectins  
 
Weak hits:
OGLUM01G44250.1   0.0122   39-73   alpha-D-mannose-specific plant lectins  
OGLUM09G18280.1   0.00111   118-169   alpha-D-mannose-specific plant lectins  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a alpha-D-mannose-specific plant lectins domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   47837 47837
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Adineta vaga   2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 12 12
No Yes Daphnia pulex Common water flea 2 2
No Yes Mnemiopsis leidyi Sea walnut 10 8
No Yes Hydra vulgaris   4 3
No Yes Sphaeroforma arctica JP610   8 7
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 3
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   7 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   10 4
No Yes Selaginella moellendorffii   230 225
No Yes Pinus taeda Loblolly pine 62 51
No Yes Picea abies Norway spruce 69 56
No Yes Eucalyptus grandis v201 Rose gum 370 345
No Yes Theobroma cacao B97-61/B2 v1 Cacao 142 127
No Yes Gossypium raimondii v221   155 141
No Yes Citrus clementina v165   155 147
No Yes Citrus sinensis v154 Sweet orange 173 160
No Yes Thellungiella halophila v173   51 48
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 82 73
No Yes Capsella rubella v183   46 44
No Yes Arabidopsis lyrata Lyrate rockcress 66 64
No Yes Arabidopsis thaliana 10 Thale cress 55 52
No Yes Carica papaya Papaya 44 40
No Yes Medicago truncatula Barrel medic 236 231
No Yes Phaseolus vulgaris v186 French bean 110 107
No Yes Glycine max v109 Soybean 164 155
No Yes Cucumis sativus v122 Cucumber 56 54
No Yes Fragaria vesca Wild strawberry 130 112
No Yes Malus domestica v196 Apple 326 293
No Yes Prunus persica v139 Peach 109 103
No Yes Linum usitatissimum v200 Flax 125 115
No Yes Manihot esculenta v147 Cassava 130 118
No Yes Populus trichocarpa v156 Black cottonwood 290 261
No Yes Vitis vinifera Wine grape 83 70
No Yes Mimulus guttatus v140 Spotted monkey flower 62 55
No Yes Solanum lycopersicum v.2.3 Tomato 102 94
No Yes Solanum tuberosum Potato 149 135
No Yes Actinidia chinensis Hongyang   84 70
No Yes Aquilegia coerulea v195   101 98
No Yes Triticum urartu 22   141 133
No Yes Triticum aestivum 22 Bread wheat 265 263
No Yes Aegilops tauschii 22   157 153
No Yes Brachypodium distachyon Stiff brome 93 93
No Yes Oryza barthii 22 African wild rice 183 132
No Yes Oryza meridionalis 22   141 126
No Yes Oryza glumaepatula 22   178 145
No Yes Oryza glaberrima African rice 109 106
No Yes Oryza punctata 22   153 122
No Yes Oryza nivara 22   188 150
No Yes Oryza brachyantha 22 Malo sina 91 87
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 155 147
No Yes Oryza sativa v193 Rice 154 146
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 83
No Yes Panicum virgatum v202 Switchgrass 133 128
No Yes Setaria italica v164 Foxtail millet 90 85
No Yes Zea mays subsp. mays Maize 75 74
No Yes Zea mays v181 Maize 81 80
No Yes Sorghum bicolor Sorghum 101 97
No Yes Musa balbisiana Balbis banana 89 74
No Yes Musa acuminata 22 Wild Malaysian banana 69 62
No Yes Amborella trichopoda 22   71 55
No Yes Physcomitrella patens   11 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   3 3
No Yes Fragilariopsis cylindrus   10 8
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   10 4
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Naegleria gruberi   11 9
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   5 4
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   5 2
No Yes Cellulomonas fimi ATCC 484   5 2
No Yes [Cellvibrio] gilvus ATCC 13127   4 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 1
No Yes Ruminococcus albus 7   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 5
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Cupriavidus metallidurans CH34   2 1
No Yes Burkholderia thailandensis E264   2 1
No Yes Burkholderia pseudomallei 1106a   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   5 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas protegens Pf-5   4 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 139 105
No Yes Hordeum vulgare 22 Domesticated barley 252 239
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 167 156
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   4 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Ruminococcus champanellensis 18P13   3 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   2 1
No Yes Burkholderia thailandensis MSMB121   2 1
No Yes Burkholderia pseudomallei MSHR305   2 1
No Yes Burkholderia pseudomallei NCTC 13179   2 1
No Yes Burkholderia pseudomallei BPC006   2 1
No Yes Burkholderia pseudomallei 1026b   2 1
No Yes Burkholderia pseudomallei 668   2 1
No Yes Burkholderia pseudomallei 1710b   2 1
No Yes Burkholderia pseudomallei K96243   2 1
No Yes Burkholderia ambifaria MC40-6   2 1
No Yes Burkholderia cenocepacia MC0-3   5 2
No Yes Burkholderia cenocepacia AU 1054   5 2
No Yes Burkholderia cepacia GG4   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Lotus japonicus (Early assembly)   58 56
No Yes Malus x domestica (Duplicate) Apple 326 293
No Yes Ricinus communis (Early assembly) Castor bean 95 81
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   117 100
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 93
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 94
No Yes Phoenix dactylifera (Early draft) Date palm 21 20
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Arabidopsis thaliana 10 Thale cress 50 47
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16960 14433
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   1137 1051
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   16394 14728
No Yes Global Ocean Sampling Expedition (GOS)   50 44
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   142 120
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   308 302
No Yes TargetDB (Targets)   2 1
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]