SUPERFAMILY 1.75 HMM library and genome assignments server

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EGF/Laminin superfamily domain assignments
in
Petromyzon marinus 76_7.0

Assignment details

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Petromyzon marinus 76_7.0 has 221 significant domains in 94 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPMAP00000000017   0.00000000458   890-946   EGF-type module  
  0.0000000165   90-142   EGF-type module  
  0.0000000183   646-686   EGF-type module  
  0.000000805   49-88   EGF-type module  
  0.000000954   3-37   EGF-type module  
  0.00000551   131-167   EGF-type module  
  0.0000103   375-413   EGF-type module  
ENSPMAP00000000128   0.0000000335   26-74   Laminin-type module  
  0.000000173   383-427   Laminin-type module  
  0.00000273   544-593   Laminin-type module  
  0.0000248   497-542   Laminin-type module  
  0.000204   1-28   Laminin-type module  
  0.000474   425-469   Laminin-type module  
  0.00162   326-361   Laminin-type module  
  0.00279   289-328   EGF-type module  
ENSPMAP00000000265   0.0000001   600-641   Integrin beta EGF-like domains  
  0.00000117   558-596   Integrin beta EGF-like domains  
  0.00642   523-549   Integrin beta EGF-like domains  
ENSPMAP00000000328   0.0000000439   582-637   EGF-type module  
ENSPMAP00000000450   0.0000000116   342-386   EGF-type module  
  0.0000000485   51-91   EGF-type module  
  0.021   15-64   EGF-type module  
  0.0264   393-424   EGF-type module  
ENSPMAP00000000509   0.00000628   42-89   Laminin-type module  
  0.0000304   88-122   EGF-type module  
ENSPMAP00000000930   0.0000000000921   306-366   EGF-type module  
ENSPMAP00000000958   0.000000000023   390-432   EGF-type module  
  0.0000000000246   126-165   EGF-type module  
  0.00000000493   90-128   EGF-type module  
  0.00000000718   425-465   EGF-type module  
  0.000000781   469-503   EGF-type module  
  0.000317   355-390   EGF-type module  
ENSPMAP00000000967   0.00000000106   1087-1123   EGF-type module  
ENSPMAP00000001000   0.00000000135   82-125   EGF-type module  
  0.0000144   156-205   EGF-type module  
ENSPMAP00000001133   0.00000359   278-322   EGF-type module  
  0.000454   325-357   EGF-type module  
  0.00099   1538-1571   EGF-type module  
ENSPMAP00000001140   0.00000000262   71-118   EGF-type module  
  0.0012   418-454   EGF-type module  
  0.0321   43-79   EGF-type module  
ENSPMAP00000001329   0.00000000003   248-304   EGF-type module  
  0.00181   27-64   EGF-type module  
  0.0133   292-334   EGF-type module  
ENSPMAP00000001576   0.00000108   1087-1122   EGF-type module  
  0.00000198   1220-1268   Laminin-type module  
ENSPMAP00000001579   0.00000101   1084-1119   EGF-type module  
  0.00000198   1217-1265   Laminin-type module  
ENSPMAP00000001691   0.0000000116   2-36   EGF-type module  
ENSPMAP00000002004   0.000000000000196   11-53   EGF-type module  
  0.00000488   49-80   EGF-type module  
ENSPMAP00000002007   0.000000000000117   153-195   EGF-type module  
  0.00000000000126   190-234   EGF-type module  
ENSPMAP00000002228   0.0000000148   457-496   EGF-type module  
  0.000000114   1-39   Laminin-type module  
ENSPMAP00000002240   0.00000000134   55-96   EGF-type module  
  0.00000000341   171-211   EGF-type module  
  0.000000393   1-33   EGF-type module  
  0.00134   131-156   EGF-type module  
ENSPMAP00000002631   0.0000000000107   37-77   EGF-type module  
  0.0000000000193   112-154   EGF-type module  
  0.0000000000272   74-116   EGF-type module  
  0.000000000035   150-190   EGF-type module  
  0.000000000332   285-317   EGF-type module  
  0.000000000655   190-231   EGF-type module  
  0.0000000175   1-41   EGF-type module  
  0.0000497   227-287   EGF-type module  
ENSPMAP00000002691   0.0000000000938   1545-1600   EGF-type module  
  0.00000000146   2352-2397   EGF-type module  
  0.00000000231   191-244   EGF-type module  
  0.0000000298   233-273   EGF-type module  
  0.000000419   1825-1866   EGF-type module  
  0.0000245   1095-1127   EGF-type module  
  0.00163   95-128   EGF-type module  
ENSPMAP00000002924   0.0000000729   125-172   EGF-type module  
  0.00000059   84-128   EGF-type module  
  0.0000375   178-208   EGF-type module  
  0.00791   56-88   EGF-type module  
ENSPMAP00000002968   0.0000000000381   184-228   EGF-type module  
  0.000000427   232-274   EGF-type module  
  0.000768   152-193   EGF-type module  
ENSPMAP00000003171   0.0000000809   131-177   EGF-type module  
ENSPMAP00000003198   0.000000262   241-285   Laminin-type module  
ENSPMAP00000003274   0.0000137   1-44   EGF-type module  
ENSPMAP00000003377   0.000000097   157-196   EGF-type module  
  0.00000228   354-394   EGF-type module  
  0.0000179   611-648   EGF-type module  
  0.0000615   653-687   EGF-type module  
  0.00046   574-607   EGF-type module  
  0.0214   198-243   EGF-type module  
ENSPMAP00000003793   0.000000437   26-63   EGF-type module  
ENSPMAP00000004026   0.0000117   2112-2154   EGF-type module  
  0.00681   1840-1870   EGF-type module  
ENSPMAP00000004142   0.000000046   145-190   EGF-type module  
ENSPMAP00000004149   0.00000335   1-36   EGF-type module  
ENSPMAP00000004159   0.000000000385   3106-3154   EGF-type module  
  0.0000000604   3073-3118   EGF-type module  
  0.000000128   1981-2027   EGF-type module  
  0.0000149   3972-4004   EGF-type module  
  0.000023   4347-4380   EGF-type module  
  0.000102   2303-2351   EGF-type module  
  0.000122   956-994   EGF-type module  
  0.000139   3934-3972   EGF-type module  
  0.0352   3432-3463   EGF-type module  
ENSPMAP00000004281   0.00000439   298-333   EGF-type module  
ENSPMAP00000004301   0.00000134   486-522   EGF-type module  
ENSPMAP00000004303   0.00000781   497-538   EGF-type module  
ENSPMAP00000004306   0.000000419   1-51   Laminin-type module  
  0.00000642   54-93   Laminin-type module  
ENSPMAP00000004587   0.00000000921   150-195   EGF-type module  
ENSPMAP00000004595   0.0000000237   143-185   Laminin-type module  
ENSPMAP00000004917   0.00000193   419-457   Follistatin (FS) module N-terminal domain, FS-N  
ENSPMAP00000005341   0.000000000000464   4-46   EGF-type module  
ENSPMAP00000005378   0.0000000386   583-629   EGF-type module  
  0.000000216   546-599   EGF-type module  
  0.000000738   210-255   EGF-type module  
  0.0000743   128-164   EGF-type module  
ENSPMAP00000005421   0.000000000306   113-151   EGF-type module  
  0.0000000237   46-89   EGF-type module  
  0.000000419   6-43   EGF-type module  
ENSPMAP00000005449   0.00000000652   27-69   EGF-type module  
  0.0000000124   129-167   EGF-type module  
  0.0000000396   87-134   EGF-type module  
ENSPMAP00000005456   0.00000106   232-269   Integrin beta EGF-like domains  
  0.0000502   278-312   Integrin beta EGF-like domains  
  0.00271   202-232   Integrin beta EGF-like domains  
ENSPMAP00000005460   0.00000103   232-269   Integrin beta EGF-like domains  
  0.0000558   278-312   Integrin beta EGF-like domains  
  0.00279   202-232   Integrin beta EGF-like domains  
ENSPMAP00000005710   0.000000000000639   1-46   EGF-type module  
ENSPMAP00000006152   0.0000000339   206-252   EGF-type module  
ENSPMAP00000006314   0.0000000921   934-980   Laminin-type module  
ENSPMAP00000006350   0.000000000153   38-85   EGF-type module  
  0.0000053   94-154   EGF-like domain of nidogen-1  
  0.0000507   3-50   EGF-like domain of nidogen-1  
  0.00134   542-569   EGF-type module  
ENSPMAP00000006526   0.00000000587   708-763   EGF-type module  
  0.00000000687   72-128   EGF-type module  
  0.00000000839   239-294   EGF-type module  
  0.0000000167   555-610   EGF-type module  
  0.0000000737   599-635   EGF-type module  
ENSPMAP00000006588   0.0000000276   80-134   Laminin-type module  
  0.000000134   32-82   Laminin-type module  
  0.00000024   191-239   Laminin-type module  
  0.0000335   145-188   Laminin-type module  
ENSPMAP00000006647   0.000000918   444-478   EGF-type module  
ENSPMAP00000006716   0.00000107   55-85   EGF-type module  
  0.0000193   282-315   EGF-type module  
  0.0000198   513-552   EGF-type module  
ENSPMAP00000006726   0.000000629   56-86   EGF-type module  
  0.0000167   288-322   EGF-type module  
ENSPMAP00000006907   0.0000000219   128-168   EGF-type module  
  0.000000325   1816-1865   EGF-type module  
  0.000000681   3756-3802   EGF-type module  
  0.0000155   2125-2174   EGF-type module  
  0.0000305   4203-4239   EGF-type module  
  0.0000599   780-827   EGF-type module  
  0.000114   4168-4200   EGF-type module  
  0.000133   4239-4272   EGF-type module  
  0.000134   4340-4375   EGF-type module  
  0.000356   96-135   EGF-type module  
  0.00037   4276-4309   EGF-type module  
  0.00167   3795-3826   EGF-type module  
  0.0399   4116-4147   EGF-type module  
ENSPMAP00000006947   0.0000000000754   46-90   EGF-type module  
  0.0000131   14-58   EGF-type module  
ENSPMAP00000007221   0.0000000000698   594-642   EGF-type module  
  0.000000000164   438-481   EGF-type module  
ENSPMAP00000007341   0.000000162   148-195   EGF-type module  
ENSPMAP00000007423   0.00000000108   140-190   EGF-type module  
ENSPMAP00000007518   0.00000000119   171-210   EGF-type module  
ENSPMAP00000007614   0.000000000116   239-281   EGF-type module  
  0.00000000101   491-534   EGF-type module  
  0.00000000183   683-719   EGF-type module  
  0.00000000392   649-682   EGF-type module  
  0.000000123   160-205   EGF-type module  
  0.00000802   204-243   EGF-type module  
  0.000305   459-495   EGF-type module  
  0.0179   279-309   EGF-type module  
ENSPMAP00000007684   0.00000171   430-466   EGF-type module  
ENSPMAP00000007749   0.00000363   740-788   Laminin-type module  
  0.00000711   258-317   Laminin-type module  
  0.00000921   638-681   Laminin-type module  
  0.000391   689-732   Laminin-type module  
  0.0103   597-640   Laminin-type module  
ENSPMAP00000007884   0.00000000875   87-129   EGF-type module  
  0.0000000215   123-163   EGF-type module  
ENSPMAP00000008213   0.000000614   581-620   Integrin beta EGF-like domains  
  0.00000474   538-576   Integrin beta EGF-like domains  
  0.0391   507-538   Integrin beta EGF-like domains  
ENSPMAP00000008261   0.000000548   1-32   EGF-type module  
ENSPMAP00000008528   0.0000517   543-596   EGF-type module  
ENSPMAP00000008656   0.000000000007   101-142   EGF-type module  
  0.0000000000887   221-262   EGF-type module  
  0.00000000106   371-413   EGF-type module  
  0.00000000929   259-290   EGF-type module  
  0.00000000965   134-169   EGF-type module  
  0.00000247   414-467   EGF-type module  
  0.0000134   22-71   EGF-type module  
  0.0000142   63-100   EGF-type module  
  0.0393   2-18   EGF-type module  
ENSPMAP00000008815   0.000000000331   494-543   EGF-type module  
  0.000000317   531-578   EGF-type module  
  0.000000324   449-488   EGF-type module  
ENSPMAP00000008833   0.00000000000865   484-538   Laminin-type module  
  0.000000000239   381-433   Laminin-type module  
  0.00000000385   436-486   Laminin-type module  
  0.0000000865   537-583   Laminin-type module  
  0.000000356   1-60   Laminin-type module  
  0.000000795   65-113   Laminin-type module  
  0.000014   126-162   Laminin-type module  
  0.000215   635-667   Laminin-type module  
  0.000383   343-383   EGF-type module  
  0.000969   586-627   Laminin-type module  
ENSPMAP00000008886   0.00000000268   687-739   Laminin-type module  
  0.00000000642   737-792   Laminin-type module  
  0.0000000156   791-837   Laminin-type module  
  0.000000067   625-681   Laminin-type module  
  0.000000628   156-215   Laminin-type module  
  0.00000112   933-981   Laminin-type module  
  0.00000162   283-342   Laminin-type module  
  0.00000642   242-285   Laminin-type module  
  0.00000837   840-889   Laminin-type module  
  0.0000586   884-930   Laminin-type module  
  0.0000921   997-1038   Laminin-type module  
  0.000181   355-391   Laminin-type module  
  0.000809   589-627   EGF-type module  
ENSPMAP00000009062   0.0000000107   25-61   EGF-type module  
  0.000347   3-21   EGF-type module  
ENSPMAP00000009234   0.0000436   179-211   EGF-type module  
  0.000173   110-144   EGF-type module  
  0.000177   45-77   EGF-type module  
  0.000548   145-174   EGF-type module  
  0.0011   78-108   EGF-type module  
ENSPMAP00000009236   0.0000108   4-38   EGF-type module  
  0.0000781   38-70   EGF-type module  
  0.0000935   102-134   EGF-type module  
  0.000246   70-101   EGF-type module  
  0.00549   134-164   EGF-type module  
ENSPMAP00000009238   0.0000000402   33-77   EGF-type module  
  0.0000000438   1-45   EGF-type module  
  0.0000222   185-217   EGF-type module  
  0.000155   73-111   EGF-type module  
  0.000233   153-185   EGF-type module  
  0.00566   109-146   EGF-type module  
  0.0134   217-244   EGF-type module  
ENSPMAP00000009333   0.00000089   318-361   EGF-type module  
ENSPMAP00000009524   0.000000112   754-796   EGF-type module  
  0.00000273   803-838   EGF-type module  
  0.0000041   833-872   EGF-type module  
ENSPMAP00000009526   0.000000155   664-706   EGF-type module  
  0.00000252   713-748   EGF-type module  
  0.00000373   743-782   EGF-type module  
ENSPMAP00000009537   0.0000272   71-103   EGF-type module  
ENSPMAP00000009539   0.00000806   107-162   EGF-type module  
  0.0109   71-103   EGF-type module  
ENSPMAP00000009542   0.00000000211   67-111   EGF-type module  
  0.000012   108-155   EGF-type module  
ENSPMAP00000009641   0.000000000502   147-205   Laminin-type module  
  0.0000000335   203-261   Laminin-type module  
  0.0000000586   259-308   Laminin-type module  
  0.000067   306-337   Laminin-type module  
ENSPMAP00000009728   0.0000000000466   49-87   EGF-type module  
  0.0000000214   5-54   EGF-type module  
ENSPMAP00000009835   0.00000142   113-146   EGF-type module  
  0.0000659   178-209   EGF-type module  
  0.00569   79-112   EGF-type module  
  0.00887   47-78   EGF-type module  
ENSPMAP00000009867   0.0000293   509-558   Laminin-type module  
  0.00293   604-627   Laminin-type module  
  0.00435   434-466   EGF-type module  
ENSPMAP00000009895   0.000000000547   1-44   EGF-type module  
  0.00503   1156-1195   EGF-type module  
  0.0137   1235-1273   EGF-type module  
  0.0574   679-718   EGF-type module  
  0.0879   586-632   Laminin-type module  
  0.0921   1021-1066   Laminin-type module  
  0.0921   931-964   Laminin-type module  
ENSPMAP00000010095   0.000000000882   451-497   EGF-type module  
  0.00000247   233-265   EGF-type module  
  0.0000146   1113-1151   EGF-type module  
  0.000171   1032-1072   EGF-type module  
  0.0133   25-53   EGF-type module  
  0.0322   1464-1490   EGF-type module  
ENSPMAP00000010217   0.0000271   59-97   EGF-type module  
ENSPMAP00000010227   0.000000963   459-502   Laminin-type module  
ENSPMAP00000010319   0.0000000067   128-175   EGF-type module  
  0.0000179   93-128   EGF-type module  
ENSPMAP00000010766   0.000000000122   603-639   EGF-type module  
  0.0000000263   254-306   EGF-type module  
ENSPMAP00000010972   0.0000174   200-233   EGF-type module  
ENSPMAP00000010980   0.000000279   402-451   EGF-type module  
  0.000648   446-470   EGF-type module  
 
Weak hits:
ENSPMAP00000000022   0.00046   323-347   EGF-type module  
  0.0046   355-378   Integrin beta EGF-like domains  
ENSPMAP00000000447   0.00791   649-684   EGF-type module  
ENSPMAP00000000529   0.000107   212-244   EGF-type module  
ENSPMAP00000001119   0.000495   1371-1404   EGF-type module  
  0.000724   1198-1243   EGF-type module  
  0.000876   1235-1264   EGF-type module  
  0.00495   1500-1531   EGF-type module  
  0.00533   1340-1370   EGF-type module  
  0.0061   1532-1563   EGF-type module  
  0.008   1436-1467   EGF-type module  
  0.0373   1564-1596   EGF-type module  
  0.0533   1404-1434   EGF-type module  
ENSPMAP00000001121   0.000359   35-63   EGF-type module  
  0.00335   3-34   EGF-type module  
ENSPMAP00000001297   0.000565   236-261   EGF-type module  
  0.000774   203-228   EGF-type module  
  0.0023   169-196   Integrin beta EGF-like domains  
  0.0136   333-358   EGF-type module  
  0.0176   303-327   EGF-type module  
  0.0523   374-404   EGF-type module  
ENSPMAP00000001485   0.0519   507-534   Cripto EGF-like domain-like  
ENSPMAP00000001486   0.0519   507-534   Cripto EGF-like domain-like  
ENSPMAP00000001659   0.00993   107-150   Integrin beta EGF-like domains  
ENSPMAP00000003701   0.0373   461-503   Integrin beta EGF-like domains  
ENSPMAP00000003989   0.00779   434-453   EGF-type module  
ENSPMAP00000004298   0.000243   520-542   Integrin beta EGF-like domains  
ENSPMAP00000004402   0.0611   586-614   Integrin beta EGF-like domains  
ENSPMAP00000004478   0.0163   521-570   EGF-type module  
ENSPMAP00000005317   0.000858   212-253   EGF-type module  
ENSPMAP00000005323   0.00073   221-258   EGF-type module  
ENSPMAP00000006941   0.00173   439-463   EGF-type module  
ENSPMAP00000007166   0.034   55-80   EGF-type module  
ENSPMAP00000007454   0.00335   239-268   EGF-type module  
  0.00458   110-155   Laminin-type module  
  0.0314   192-241   Laminin-type module  
  0.0335   153-198   Laminin-type module  
ENSPMAP00000007455   0.00307   239-268   EGF-type module  
  0.00698   110-155   Laminin-type module  
ENSPMAP00000007541   0.0115   317-362   Laminin-type module  
  0.0241   361-388   EGF-type module  
  0.0447   15-60   EGF-type module  
  0.0659   442-476   EGF-type module  
ENSPMAP00000007905   0.00461   196-225   Laminin-type module  
  0.0101   104-138   EGF-type module  
  0.0105   240-267   Laminin-type module  
  0.0186   150-199   Laminin-type module  
  0.088   283-307   EGF-type module  
ENSPMAP00000008271   0.00251   134-187   EGF-type module  
ENSPMAP00000009625   0.000148   215-239   EGF-type module  
  0.000391   184-208   EGF-type module  
  0.002   153-176   EGF-type module  
  0.00343   245-268   Integrin beta EGF-like domains  
  0.0399   120-146   Integrin beta EGF-like domains  
ENSPMAP00000009804   0.00753   304-344   Integrin beta EGF-like domains  
ENSPMAP00000010156   0.00395   433-451   EGF-type module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   719145 719145
No Yes Homo sapiens 76_38 Human 1736 621
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 532 163
No Yes Gorilla gorilla 76_3.1 Western gorilla 876 233
No Yes Pongo abelii 76_2 Sumatran orangutan 539 174
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171
No Yes Papio anubis 76 Olive baboon 634 191
No Yes Macaca mulatta 76_1 Rhesus monkey 925 318
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386
No Yes Otolemur garnettii 76_3 Small-eared galago 551 171
No Yes Microcebus murinus 76_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 76_5.0 Norway rat 613 207
No Yes Mus musculus 76_38 House mouse 1015 344
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 515 145
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 521 161
No Yes Cavia porcellus 76_3 Domestic guinea pig 580 173
No Yes Oryctolagus cuniculus 76_2 Rabbit 478 160
No Yes Ochotona princeps 76 American pika 469 142
No Yes Tupaia belangeri 76 Northern tree shrew 407 132
No Yes Sus scrofa 76_10.2 Pig 585 211
No Yes Bos taurus 76_3.1 Cattle 632 189
No Yes Ovis aries 76_3.1 Sheep 602 193
No Yes Vicugna pacos 76_1 Alpaca 260 102
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 76_1.0 Domestic ferret 583 186
No Yes Ailuropoda melanoleuca 76_1 Giant panda 634 192
No Yes Canis familiaris 76_3.1 Dog 761 226
No Yes Felis catus 76_6.2 Domestic cat 592 185
No Yes Equus caballus 76_2 Horse 806 230
No Yes Myotis lucifugus 76_2.0 Little brown bat 502 169
No Yes Pteropus vampyrus 76_1 Large flying fox 529 164
No Yes Sorex araneus 76_1 European shrew 286 102
No Yes Erinaceus europaeus 76 Western European hedgehog 383 118
No Yes Procavia capensis 76_1 Cape rock hyrax 460 149
No Yes Loxodonta africana 76_3 African savanna elephant 690 216
No Yes Echinops telfairi 76 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99
No Yes Macropus eugenii 76_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 616 176
No Yes Ornithorhynchus anatinus 76_5 Platypus 511 184
No Yes Saccoglossus kowalevskii v3.0   3261 466
No Yes Petromyzon marinus 76_7.0 Sea lamprey 221 94
No Yes Meleagris gallopavo 76_2 Turkey 509 175
No Yes Gallus gallus 76_4 Chicken 523 155
No Yes Anas platyrhynchos 76_1.0 Mallard 519 172
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 513 170
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 533 157
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196
No Yes Anolis carolinensis 76_2.0 Green anole 539 160
No Yes Xenopus laevis African clawed frog 514 207
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186
No Yes Latimeria chalumnae 76_1 Coelacanth 738 218
No Yes Lepisosteus oculatus 76 Spotted gar 888 241
No Yes Gadus morhua 76_1 Atlantic cod 618 198
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299
No Yes Takifugu rubripes 76_4 Torafugu 2323 723
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242
No Yes Oryzias latipes 76_1 Japanese medaka 740 228
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196
No Yes Poecilia formosa 76 Amazon molly 687 203
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1051 282
No Yes Astyanax mexicanus 76 Mexican tetra 752 239
No Yes Danio rerio 76_9 Zebrafish 1139 389
No Yes Oikopleura dioica   459 149
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332
No Yes Ciona intestinalis 76 Vase tunicate 438 155
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612
No Yes Adineta vaga   1146 278
No Yes Octopus bimaculoides 280   748 217
No Yes Crassostrea gigas 22 Pacific oyster 874 287
No Yes Lottia gigantea Owl limpet 627 164
No Yes Helobdella robusta   407 130
No Yes Capitella sp. I   916 309
No Yes Danaus plexippus OGS1.0 Monarch butterfly 197 52
No Yes Heliconius melpomene Postman butterfly 184 46
No Yes Bombyx mori Domestic silkworm 149 65
No Yes Nasonia vitripennis Jewel wasp 168 39
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 745 159
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49
No Yes Linepithema humile v1.1 Argentine ant 160 66
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 182 59
No Yes Solenopsis invicta v.2.2.3 Red fire ant 111 54
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46
No Yes Atta cephalotes v1.1   189 65
No Yes Camponotus floridanus v3.3 Florida carpenter ant 206 46
No Yes Lucilia cuprina Australian sheep blowfly 189 47
No Yes Drosophila grimshawi 1.3   235 55
No Yes Drosophila willistoni 1.3   203 47
No Yes Drosophila pseudoobscura 2.13   219 52
No Yes Drosophila persimilis 1.3   189 52
No Yes Drosophila suzukii   233 53
No Yes Drosophila yakuba 1.3   214 47
No Yes Drosophila simulans 1.3   145 43
No Yes Drosophila sechellia 1.3   187 41
No Yes Drosophila melanogaster 76_5 Fruit fly 696 152
No Yes Drosophila erecta 1.3   215 44
No Yes Drosophila ananassae 1.3   210 48
No Yes Drosophila virilis 1.2   216 49
No Yes Drosophila mojavensis 1.3   212 46
No Yes Megaselia scalaris 22   77 32
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54
No Yes Culex pipiens quinquefasciatus Southern house mosquito 204 55
No Yes Anopheles darlingi 22 American malaria mosquito 125 29
No Yes Anopheles gambiae 49_3j African malaria mosquito 196 51
No Yes Tribolium castaneum 3.0 Red flour beetle 229 58
No Yes Pediculus humanus corporis (Early assembly) Human body louse 220 55
No Yes Acyrthosiphon pisum Pea aphid 185 35
No Yes Rhodnius prolixus 22   183 44
No Yes Daphnia pulex Common water flea 256 74
No Yes Strigamia maritima 22   230 60
No Yes Sarcoptes scabiei   166 48
No Yes Tetranychus urticae Two-spotted spider mite 224 64
No Yes Ixodes scapularis (Preliminary) Black-legged tick 156 55
No Yes Pristionchus pacificus   229 96
No Yes Meloidogyne incognita Southern root-knot nematode 119 42
No Yes Meloidogyne hapla   76 37
No Yes Onchocerca volvulus 22   185 53
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 433 107
No Yes Caenorhabditis japonica   193 64
No Yes Caenorhabditis brenneri   302 105
No Yes Caenorhabditis remanei   276 100
No Yes Caenorhabditis elegans 76_235 Roundworm 528 152
No Yes Caenorhabditis briggsae 2   242 82
No Yes Trichinella spiralis 22   313 92
No Yes Hymenolepis microstoma   122 36
No Yes Echinococcus multilocularis   133 38
No Yes Echinococcus granulosus   126 38
No Yes Taenia solium Pork tapeworm 127 41
No Yes Schistosoma mansoni   123 45
No Yes Mnemiopsis leidyi Sea walnut 178 50
No Yes Thelohanellus kitauei   26 25
No Yes Acropora digitifera v1.0   831 347
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1039 372
No Yes Hydra vulgaris   350 115
No Yes Amphimedon queenslandica   433 151
No Yes Trichoplax adhaerens   574 125
No Yes Proterospongia sp. ATCC 50818   129 59
No Yes Monosiga brevicollis   53 30
No Yes Sphaeroforma arctica JP610   120 34
No Yes Capsaspora owczarzaki ATCC 30864   28 22
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   19 9
No Yes Dictyostelium purpureum   9 6
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 17 17
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   17 17
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 10 10
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 18 18
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 5
No Yes Fragaria vesca Wild strawberry 15 13
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 11 11
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Populus trichocarpa v156 Black cottonwood 10 10
No Yes Vitis vinifera Wine grape 19 12
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 20 20
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   42 42
No Yes Triticum aestivum 22 Bread wheat 122 122
No Yes Aegilops tauschii 22   64 64
No Yes Brachypodium distachyon Stiff brome 26 25
No Yes Oryza barthii 22 African wild rice 59 49
No Yes Oryza meridionalis 22   53 44
No Yes Oryza glumaepatula 22   66 64
No Yes Oryza glaberrima African rice 31 31
No Yes Oryza punctata 22   44 41
No Yes Oryza nivara 22   56 52
No Yes Oryza brachyantha 22 Malo sina 38 38
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 50 49
No Yes Oryza sativa v193 Rice 51 50
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 16 16
No Yes Panicum virgatum v202 Switchgrass 77 76
No Yes Setaria italica v164 Foxtail millet 40 40
No Yes Zea mays subsp. mays Maize 18 17
No Yes Zea mays v181 Maize 20 19
No Yes Sorghum bicolor Sorghum 26 26
No Yes Musa balbisiana Balbis banana 14 13
No Yes Musa acuminata 22 Wild Malaysian banana 29 26
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   7 6
No Yes Chlorella vulgaris   5 5
No Yes Volvox carteri f. nagariensis   2 2
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus lucimarinus CCE9901   4 4
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   3 2
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   18 12
No Yes Giardia lamblia 2.3   26 14
No Yes Cyanophora paradoxa   4 4
No Yes Ectocarpus siliculosus   10 9
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   4 4
No Yes Pythium arrhenomanes ATCC 12531 22   7 6
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   5 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 4
No Yes Fragilariopsis cylindrus   14 10
No Yes Thalassiosira pseudonana CCMP1335   6 4
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   10 10
No Yes Tetrahymena thermophila SB210 1   4 4
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Cryptosporidium hominis   7 6
No Yes Cryptosporidium muris   13 7
No Yes Cryptosporidium parvum Iowa II   12 7
No Yes Neospora caninum   12 7
No Yes Toxoplasma gondii VEG   12 6
No Yes Toxoplasma gondii ME49   14 8
No Yes Toxoplasma gondii GT1   8 5
No Yes Babesia bovis T2Bo   4 2
No Yes Theileria parva   1 1
No Yes Plasmodium falciparum 3D7   10 7
No Yes Plasmodium vivax SaI-1 7.0   12 8
No Yes Plasmodium knowlesi strain H   13 9
No Yes Plasmodium yoelii ssp. yoelii 1   8 5
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 6
No Yes Symbiodinium minutum clade B1 v1.2   10 7
No Yes Naegleria gruberi   15 13
No Yes Guillardia theta CCMP2712 v1.0   24 18
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56
No Yes Ascaris suum Victoria/Ghent Pig roundworm 227 76
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 56 56
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Neospora caninum Nc-Liverpool 6.2   12 7
No Yes Plasmodium falciparum HB3   9 6
No Yes Plasmodium falciparum Dd2   6 4
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1814 677
No Yes Homo sapiens (NCBI version) Human 877 288
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169
No Yes Heliconius numata (Incomplete)   14 9
No Yes Loa loa v3.3 (Request) Eye worm 185 61
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Homo sapiens 69_37 Human 710 195
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 517 157
No Yes Gorilla gorilla 69_3.1 Western gorilla 571 161
No Yes Pongo abelii 69_2 Sumatran orangutan 519 168
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156
No Yes Macaca mulatta 69_1 Rhesus monkey 556 172
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165
No Yes Otolemur garnettii 69_3 Small-eared galago 549 170
No Yes Microcebus murinus 69_1 Gray mouse lemur 455 139
No Yes Rattus norvegicus 69_3.4 Norway rat 574 173
No Yes Mus musculus 69_38 House mouse 554 169
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 513 143
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156
No Yes Cavia porcellus 69_3 Domestic guinea pig 558 163
No Yes Oryctolagus cuniculus 69_2 Rabbit 463 150
No Yes Ochotona princeps 69 American pika 469 142
No Yes Tupaia belangeri 69 Northern tree shrew 407 132
No Yes Sus scrofa 69_10.2 Pig 467 164
No Yes Bos taurus 69_3.1 Cattle 558 165
No Yes Vicugna pacos 69_1 Alpaca 260 102
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 526 156
No Yes Mustela putorius furo 69_1.0 Domestic ferret 565 183
No Yes Ailuropoda melanoleuca 69_1 Giant panda 551 166
No Yes Canis familiaris 69_3.1 Dog 552 165
No Yes Felis catus 69 Domestic cat 380 133
No Yes Equus caballus 69_2 Horse 546 178
No Yes Myotis lucifugus 69_2.0 Little brown bat 472 160
No Yes Pteropus vampyrus 69_1 Large flying fox 525 162
No Yes Sorex araneus 69_1 European shrew 286 102
No Yes Erinaceus europaeus 69 Western European hedgehog 383 118
No Yes Procavia capensis 69_1 Cape rock hyrax 458 148
No Yes Loxodonta africana 69_3 African savanna elephant 526 165
No Yes Echinops telfairi 69 Small Madagascar hedgehog 391 135
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97
No Yes Macropus eugenii 69_1.0 Tammar wallaby 454 139
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 567 166
No Yes Ornithorhynchus anatinus 69_5 Platypus 452 168
No Yes Petromyzon marinus 69_7.0 Sea lamprey 203 84
No Yes Meleagris gallopavo 69_2 Turkey 471 152
No Yes Gallus gallus 69_2 Chicken 516 150
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 494 162
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161
No Yes Anolis carolinensis 69_2.0 Green anole 510 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156
No Yes Latimeria chalumnae 69_1 Coelacanth 639 183
No Yes Gadus morhua 69_1 Atlantic cod 547 170
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221
No Yes Takifugu rubripes 69_4 Torafugu 677 202
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191
No Yes Oryzias latipes 69_1 Japanese medaka 656 187
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 749 202
No Yes Danio rerio 69_9 Zebrafish 769 240
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112
No Yes Ciona intestinalis 69 Vase tunicate 408 143
No Yes Drosophila melanogaster 69_5 Fruit fly 218 50
No Yes Caenorhabditis elegans 69_215 Roundworm 241 74
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_050719N (meta-genome)   1 1
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes NCBI 2017_08 genome   302166 90591
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   242 149
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   13 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   6 3
No Yes STRING v9.0.5 (STRING)   25827 7909
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 1
No Yes Uniprot 2018_03 genome   214533 69342
No Yes Global Ocean Sampling Expedition (GOS)   425 226
No Yes NCBI viral sequences (Viral)   27 26
No Yes PDB chains (SCOP 1.75) (PDB)   117 88
No Yes Protein Data Bank (all PDB sequenc)   1179 857
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2437 2434
No Yes TargetDB (Targets)   486 191
No Yes UniProt viral sequences (Viral)   82 69

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