Select to display Genome Domains Proteins No ALL 719145 719145 No Homo sapiens 76_38 Human 1736 621 No Pan troglodytes 76_2.1.4 Chimpanzee 532 163 No Gorilla gorilla 76_3.1 Western gorilla 876 233 No Pongo abelii 76_2 Sumatran orangutan 539 174 No Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 555 171 No Papio anubis 76 Olive baboon 634 191 Yes Macaca mulatta 76_1 Rhesus monkey 925 318 No Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1183 386 No Otolemur garnettii 76_3 Small-eared galago 551 171 No Microcebus murinus 76_1 Gray mouse lemur 455 139 No Rattus norvegicus 76_5.0 Norway rat 613 207 No Mus musculus 76_38 House mouse 1015 344 No Dipodomys ordii 76_1 Ord's kangaroo rat 515 145 No Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 529 164 No Heterocephalus glaber v1.7-2 Naked mole-rat 521 161 No Cavia porcellus 76_3 Domestic guinea pig 580 173 No Oryctolagus cuniculus 76_2 Rabbit 478 160 No Ochotona princeps 76 American pika 469 142 No Tupaia belangeri 76 Northern tree shrew 407 132 No Sus scrofa 76_10.2 Pig 585 211 No Bos taurus 76_3.1 Cattle 632 189 No Ovis aries 76_3.1 Sheep 602 193 No Vicugna pacos 76_1 Alpaca 260 102 No Tursiops truncatus 76_1 Bottlenose dolphin 526 156 No Mustela putorius furo 76_1.0 Domestic ferret 583 186 No Ailuropoda melanoleuca 76_1 Giant panda 634 192 No Canis familiaris 76_3.1 Dog 761 226 No Felis catus 76_6.2 Domestic cat 592 185 No Equus caballus 76_2 Horse 806 230 No Myotis lucifugus 76_2.0 Little brown bat 502 169 No Pteropus vampyrus 76_1 Large flying fox 529 164 No Sorex araneus 76_1 European shrew 286 102 No Erinaceus europaeus 76 Western European hedgehog 383 118 No Procavia capensis 76_1 Cape rock hyrax 460 149 No Loxodonta africana 76_3 African savanna elephant 690 216 No Echinops telfairi 76 Small Madagascar hedgehog 391 135 No Dasypus novemcinctus 76_2 Nine-banded armadillo 616 199 No Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 271 99 No Macropus eugenii 76_1.0 Tammar wallaby 454 139 No Sarcophilus harrisii 76_7.0 Tasmanian devil 621 199 No Monodelphis domestica 76_5 Gray short-tailed opossum 616 176 No Ornithorhynchus anatinus 76_5 Platypus 511 184 No Saccoglossus kowalevskii v3.0 3261 466 No Petromyzon marinus 76_7.0 Sea lamprey 221 94 No Meleagris gallopavo 76_2 Turkey 509 175 No Gallus gallus 76_4 Chicken 523 155 No Anas platyrhynchos 76_1.0 Mallard 519 172 No Taeniopygia guttata 76_3.2.4 Zebra finch 513 170 No Ficedula albicollis 76_1.0 Collared flycatcher 533 157 No Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 592 196 No Anolis carolinensis 76_2.0 Green anole 539 160 No Xenopus laevis African clawed frog 514 207 No Xenopus tropicalis 76_4.2 Tropical clawed frog 694 186 No Latimeria chalumnae 76_1 Coelacanth 738 218 No Lepisosteus oculatus 76 Spotted gar 888 241 No Gadus morhua 76_1 Atlantic cod 618 198 No Tetraodon nigroviridis 76_8 Spotted green pufferfish 995 299 No Takifugu rubripes 76_4 Torafugu 2323 723 No Gasterosteus aculeatus 76_1 Three-spined stickleback 771 242 No Oryzias latipes 76_1 Japanese medaka 740 228 No Xiphophorus maculatus 76_4.4.2 Southern platyfish 627 196 No Poecilia formosa 76 Amazon molly 687 203 No Oreochromis niloticus 76_1.0 Nile tilapia 1051 282 No Astyanax mexicanus 76 Mexican tetra 752 239 No Danio rerio 76_9 Zebrafish 1139 389 No Oikopleura dioica 459 149 No Ciona savignyi 76_2.0 Pacific transparent sea squirt 1671 332 No Ciona intestinalis 76 Vase tunicate 438 155 No Strongylocentrotus purpuratus v3.1 Purple sea urchin 2661 612 No Adineta vaga 1146 278 No Octopus bimaculoides 280 748 217 No Crassostrea gigas 22 Pacific oyster 874 287 No Lottia gigantea Owl limpet 627 164 No Helobdella robusta 407 130 No Capitella sp. I 916 309 No Danaus plexippus OGS1.0 Monarch butterfly 197 52 No Heliconius melpomene Postman butterfly 184 46 No Bombyx mori Domestic silkworm 149 65 No Nasonia vitripennis Jewel wasp 168 39 No Apis mellifera 38.2d (Not maintained) Honey bee 745 159 No Harpegnathos saltator v3.3 Jerdon's jumping ant 213 49 No Linepithema humile v1.1 Argentine ant 160 66 No Pogonomyrmex barbatus v1.2 Red harvester ant 182 59 No Solenopsis invicta v.2.2.3 Red fire ant 111 54 No Acromyrmex echinatior v3.8 Panamanian leafcutter ant 220 46 No Atta cephalotes v1.1 189 65 No Camponotus floridanus v3.3 Florida carpenter ant 206 46 No Lucilia cuprina Australian sheep blowfly 189 47 No Drosophila grimshawi 1.3 235 55 No Drosophila willistoni 1.3 203 47 No Drosophila pseudoobscura 2.13 219 52 No Drosophila persimilis 1.3 189 52 No Drosophila suzukii 233 53 No Drosophila yakuba 1.3 214 47 No Drosophila simulans 1.3 145 43 No Drosophila sechellia 1.3 187 41 No Drosophila melanogaster 76_5 Fruit fly 696 152 No Drosophila erecta 1.3 215 44 No Drosophila ananassae 1.3 210 48 No Drosophila virilis 1.2 216 49 No Drosophila mojavensis 1.3 212 46 No Megaselia scalaris 22 77 32 No Aedes aegypti 55 (Not maintained) Yellow fever mosquito 222 54 No Culex pipiens quinquefasciatus Southern house mosquito 204 55 No Anopheles darlingi 22 American malaria mosquito 125 29 No Anopheles gambiae 49_3j African malaria mosquito 196 51 No Tribolium castaneum 3.0 Red flour beetle 229 58 No Pediculus humanus corporis Human body louse 220 55 No Acyrthosiphon pisum Pea aphid 185 35 No Rhodnius prolixus 22 183 44 No Daphnia pulex Common water flea 256 74 No Strigamia maritima 22 230 60 No Sarcoptes scabiei 166 48 No Tetranychus urticae Two-spotted spider mite 224 64 No Ixodes scapularis Black-legged tick 156 55 No Pristionchus pacificus 229 96 No Meloidogyne incognita Southern root-knot nematode 119 42 No Meloidogyne hapla 76 37 No Onchocerca volvulus 22 185 53 No Brugia malayi WS250 Agent of lymphatic filariasis 433 107 No Caenorhabditis japonica 193 64 No Caenorhabditis brenneri 302 105 No Caenorhabditis remanei 276 100 No Caenorhabditis elegans 76_235 Roundworm 528 152 No Caenorhabditis briggsae 2 242 82 No Trichinella spiralis 22 313 92 No Hymenolepis microstoma 122 36 No Echinococcus multilocularis 133 38 No Echinococcus granulosus 126 38 No Taenia solium Pork tapeworm 127 41 No Schistosoma mansoni 123 45 No Mnemiopsis leidyi Sea walnut 178 50 No Thelohanellus kitauei 26 25 No Acropora digitifera v1.0 831 347 No Nematostella vectensis 1.0 Starlet sea anemone 1039 372 No Hydra vulgaris 350 115 No Amphimedon queenslandica 433 151 No Trichoplax adhaerens 574 125 No Proterospongia sp. ATCC 50818 129 59 No Monosiga brevicollis 53 30 No Sphaeroforma arctica JP610 120 34 No Capsaspora owczarzaki ATCC 30864 28 22 No Amorphotheca resinae v1.0 Creosote fungus 1 1 No Didymella exigua CBS 183.55 v1.0 1 1 No Trichophyton verrucosum HKI 0517 1 1 No Arthroderma benhamiae CBS 112371 1 1 No Trichophyton tonsurans CBS 112818 1 1 No Trichophyton rubrum CBS 118892 1 1 No Penicillium chrysogenum Wisconsin 54-1255 1 1 No Penicillium chrysogenum v1.0 1 1 No Aspergillus terreus NIH2624 1 1 No Aspergillus flavus NRRL3357 1 1 No Yarrowia lipolytica CLIB122 1 1 No Spizellomyces punctatus DAOM BR117 1 1 No Dictyostelium discoideum 19 9 No Dictyostelium purpureum 9 6 No Pinus taeda Loblolly pine 1 1 No Picea abies Norway spruce 1 1 No Eucalyptus grandis v201 Rose gum 17 17 No Theobroma cacao B97-61/B2 v1 Cacao 6 6 No Gossypium raimondii v221 17 17 No Citrus clementina v165 4 4 No Citrus sinensis v154 Sweet orange 10 10 No Thellungiella halophila v173 3 3 No Brassica rapa Chiifu-401 1.2 Field mustard 11 11 No Capsella rubella v183 6 6 No Arabidopsis lyrata Lyrate rockcress 4 4 No Arabidopsis thaliana 10 Thale cress 5 5 No Carica papaya Papaya 4 4 No Medicago truncatula Barrel medic 18 18 No Phaseolus vulgaris v186 French bean 8 8 No Glycine max v109 Soybean 12 12 No Cucumis sativus v122 Cucumber 6 5 No Fragaria vesca Wild strawberry 15 13 No Malus domestica v196 Apple 25 25 No Prunus persica v139 Peach 11 11 No Linum usitatissimum v200 Flax 1 1 No Populus trichocarpa v156 Black cottonwood 10 10 No Vitis vinifera Wine grape 19 12 No Mimulus guttatus v140 Spotted monkey flower 2 2 No Solanum lycopersicum v.2.3 Tomato 6 6 No Solanum tuberosum Potato 20 20 No Actinidia chinensis Hongyang 5 5 No Aquilegia coerulea v195 14 14 No Triticum urartu 22 42 42 No Triticum aestivum 22 Bread wheat 122 122 No Aegilops tauschii 22 64 64 No Brachypodium distachyon Stiff brome 26 25 No Oryza barthii 22 African wild rice 59 49 No Oryza meridionalis 22 53 44 No Oryza glumaepatula 22 66 64 No Oryza glaberrima African rice 31 31 No Oryza punctata 22 44 41 No Oryza nivara 22 56 52 No Oryza brachyantha 22 Malo sina 38 38 No Oryza sativa ssp. japonica 5.0 Japanese rice 50 49 No Oryza sativa v193 Rice 51 50 No Phyllostachys heterocycla var. pubescens Kikko-chiku 16 16 No Panicum virgatum v202 Switchgrass 77 76 No Setaria italica v164 Foxtail millet 40 40 No Zea mays subsp. mays Maize 18 17 No Zea mays v181 Maize 20 19 No Sorghum bicolor Sorghum 26 26 No Musa balbisiana Balbis banana 14 13 No Musa acuminata 22 Wild Malaysian banana 29 26 No Amborella trichopoda 22 4 4 No Physcomitrella patens 2 2 No Coccomyxa subellipsoidea sp. C-169 v2 4 4 No Asterochloris sp. Cgr/DA1pho v1.0 2 2 No Chlorella variabilis sp. NC64A 7 6 No Chlorella vulgaris 5 5 No Volvox carteri f. nagariensis 2 2 No Volvox carteri v199 1 1 No Chlamydomonas reinhardtii 4.0 5 5 No Ostreococcus lucimarinus CCE9901 4 4 No Ostreococcus tauri 2 2 No Bathycoccus prasinos 4 4 No Micromonas sp. RCC299 3 2 No Micromonas pusilla CCMP1545 v3.0 1 1 No Thecamonas trahens ATCC 50062 1 1 No Bigelowiella natans CCMP2755 22 18 12 No Giardia lamblia 2.3 26 14 No Cyanophora paradoxa 4 4 No Ectocarpus siliculosus 10 9 No Albugo laibachii 22 3 3 No Pythium iwayamai DAOM BR242034 22 4 4 No Pythium arrhenomanes ATCC 12531 22 7 6 No Pythium ultimum v1.7-2 2 2 No Pythium aphanidermatum DAOM BR444 22 5 4 No Pythium irregulare DAOM BR486 22 2 2 No Pythium vexans DAOM BR484 22 1 1 No Phytophthora ramorum 1.1 Sudden oak death agent 3 3 No Phaeodactylum tricornutum CCAP 1055/1 6 4 No Fragilariopsis cylindrus 14 10 No Thalassiosira pseudonana CCMP1335 6 4 No Perkinsus marinus ATCC 50983 3 3 No Paramecium tetraurelia 10 10 No Tetrahymena thermophila SB210 1 4 4 No Ichthyophthirius multifiliis strain G5 1 1 No Cryptosporidium hominis 7 6 No Cryptosporidium muris 13 7 No Cryptosporidium parvum Iowa II 12 7 No Neospora caninum 12 7 No Toxoplasma gondii VEG 12 6 No Toxoplasma gondii ME49 14 8 No Toxoplasma gondii GT1 8 5 No Babesia bovis T2Bo 4 2 No Theileria parva 1 1 No Plasmodium falciparum 3D7 10 7 No Plasmodium vivax SaI-1 7.0 12 8 No Plasmodium knowlesi strain H 13 9 No Plasmodium yoelii ssp. yoelii 1 8 5 No Plasmodium chabaudi 9 6 No Plasmodium berghei ANKA 10 6 No Symbiodinium minutum clade B1 v1.2 10 7 No Naegleria gruberi 15 13 No Guillardia theta CCMP2712 v1.0 24 18 No Emiliania huxleyi CCMP1516 3 3 No Haliscomenobacter hydrossis DSM 1100 1 1 No Odoribacter splanchnicus DSM 20712 1 1 No Haliangium ochraceum DSM 14365 1 1 No Stigmatella aurantiaca DW4/3-1 1 1 No Myxococcus xanthus DK 1622 1 1 No Myxococcus fulvus HW-1 1 1 No Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 774 252 No Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 393 99 No Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 218 56 No Ascaris suum Victoria/Ghent Pig roundworm 227 76 No Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 360 114 No Theobroma cacao Matina 1-6 v0.9 Cacao 6 6 No Hordeum vulgare 22 Domesticated barley 56 56 No Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42 No Neospora caninum Nc-Liverpool 6.2 12 7 No Plasmodium falciparum HB3 9 6 No Plasmodium falciparum Dd2 6 4 No Myxococcus stipitatus DSM 14675 2 2 No Homo sapiens 75_37 (old version GRC) Human 1814 677 No Homo sapiens Human 877 288 No Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 556 169 No Heliconius numata 14 9 No Loa loa v3.3 (Request) Eye worm 185 61 No Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 186 80 No Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 169 51 No Picea sitchensis Sitka spruce 1 1 No Lotus japonicus 3 3 No Malus x domestica (Duplicate) Apple 25 25 No Ricinus communis Castor bean 5 5 No Nicotiana benthamiana 0.4.4 (Early draft) 4 4 No Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6 No Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6 No Phoenix dactylifera Date palm 4 4 No Homo sapiens 69_37 Human 710 195 No Pan troglodytes 69_2.1.4 Chimpanzee 517 157 No Gorilla gorilla 69_3.1 Western gorilla 571 161 No Pongo abelii 69_2 Sumatran orangutan 519 168 No Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 495 156 No Macaca mulatta 69_1 Rhesus monkey 556 172 No Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 578 165 No Otolemur garnettii 69_3 Small-eared galago 549 170 No Microcebus murinus 69_1 Gray mouse lemur 455 139 No Rattus norvegicus 69_3.4 Norway rat 574 173 No Mus musculus 69_38 House mouse 554 169 No Dipodomys ordii 69_1 Ord's kangaroo rat 513 143 No Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 502 156 No Cavia porcellus 69_3 Domestic guinea pig 558 163 No Oryctolagus cuniculus 69_2 Rabbit 463 150 No Ochotona princeps 69 American pika 469 142 No Tupaia belangeri 69 Northern tree shrew 407 132 No Sus scrofa 69_10.2 Pig 467 164 No Bos taurus 69_3.1 Cattle 558 165 No Vicugna pacos 69_1 Alpaca 260 102 No Tursiops truncatus 69_1 Bottlenose dolphin 526 156 No Mustela putorius furo 69_1.0 Domestic ferret 565 183 No Ailuropoda melanoleuca 69_1 Giant panda 551 166 No Canis familiaris 69_3.1 Dog 552 165 No Felis catus 69 Domestic cat 380 133 No Equus caballus 69_2 Horse 546 178 No Myotis lucifugus 69_2.0 Little brown bat 472 160 No Pteropus vampyrus 69_1 Large flying fox 525 162 No Sorex araneus 69_1 European shrew 286 102 No Erinaceus europaeus 69 Western European hedgehog 383 118 No Procavia capensis 69_1 Cape rock hyrax 458 148 No Loxodonta africana 69_3 African savanna elephant 526 165 No Echinops telfairi 69 Small Madagascar hedgehog 391 135 No Dasypus novemcinctus 69_2 Nine-banded armadillo 322 125 No Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 267 97 No Macropus eugenii 69_1.0 Tammar wallaby 454 139 No Sarcophilus harrisii 69_7.0 Tasmanian devil 491 158 No Monodelphis domestica 69_5 Gray short-tailed opossum 567 166 No Ornithorhynchus anatinus 69_5 Platypus 452 168 No Petromyzon marinus 69_7.0 Sea lamprey 203 84 No Meleagris gallopavo 69_2 Turkey 471 152 No Gallus gallus 69_2 Chicken 516 150 No Taeniopygia guttata 69_3.2.4 Zebra finch 494 162 No Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 497 161 No Anolis carolinensis 69_2.0 Green anole 510 157 No Xenopus tropicalis 69_4.2 Tropical clawed frog 553 156 No Latimeria chalumnae 69_1 Coelacanth 639 183 No Gadus morhua 69_1 Atlantic cod 547 170 No Tetraodon nigroviridis 69_8 Spotted green pufferfish 693 221 No Takifugu rubripes 69_4 Torafugu 677 202 No Gasterosteus aculeatus 69_1 Three-spined stickleback 659 191 No Oryzias latipes 69_1 Japanese medaka 656 187 No Xiphophorus maculatus 69_4.4.2 Southern platyfish 627 196 No Oreochromis niloticus 69_1.0 Nile tilapia 749 202 No Danio rerio 69_9 Zebrafish 769 240 No Ciona savignyi 69_2.0 Pacific transparent sea squirt 523 112 No Ciona intestinalis 69 Vase tunicate 408 143 No Drosophila melanogaster 69_5 Fruit fly 218 50 No Caenorhabditis elegans 69_215 Roundworm 241 74 No Arabidopsis thaliana 10 Thale cress 5 5 No 1_050719N (meta-genome) 1 1 No 3_Below_base_of_euphotic (meta-genome) 2 1 No 7_Oxygen_minimum_layer (meta-genome) 1 1 No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 1 1 No Atta cephalotes fungus garden (ACEF) (meta-genome) 1 1 No Combined (meta-genome) 1 1 No Dump bottom (Dump bottom) (meta-genome) 1 1 No Dump top (Dump top) (meta-genome) 1 1 No Endophytic microbiome from Rice (meta-genome) 2 2 No Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 2 2 No Fungus garden combined (combined) (meta-genome) 1 1 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 2 2 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 1 1 No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 2 1 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 2 1 No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 2 2 No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 1 1 No NCBI 2017_08 genome 302166 90591 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 1 1 No Protozoadb 2010_08 (Protozoadb) 242 149 No Soil microbial communities from Minnesota Farm (meta-genome) 1 1 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 13 7 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 6 3 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 1 1 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 2 2 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 6 3 No STRING v9.0.5 (STRING) 25827 7909 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 1 1 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 2 1 No Uniprot 2018_03 genome 214533 69342 No Global Ocean Sampling Expedition (GOS) 425 226 No NCBI viral sequences (Viral) 27 26 No PDB chains (SCOP 1.75 ) (PDB) 117 88 No Protein Data Bank (all PDB sequenc) 1179 857 No SCOP2 SCOPe CATH ECOD (all domain sequ) 2437 2434 No TargetDB 486 191 No UniProt 82 69
