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Non-globular alpha+beta subunits of globular proteins superfamily domain assignments
in
STRING v9.0.5

Assignment details

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STRING v9.0.5 (STRING) has 52 significant domains in 52 proteins.

     

Sequence ID   Evalue   Region   Family  
10090.ENSMUSP00000045284   3.6e-21   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
10116.ENSRNOP00000024609   1.08e-21   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
10141.ENSCPOP00000001873   7.52e-20   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
13616.ENSMODP00000015899   1.44e-19   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
198214.CP0132   0.00000131   28-124   Virulence effector SptP domain  
209261.t2780   3.66e-42   36-136   Virulence effector SptP domain  
220341.STY3001   3.66e-42   36-136   Virulence effector SptP domain  
243160.BMAA1521   4.97e-43   26-127   Virulence effector SptP domain  
271848.BTH_II0849   1.77e-41   26-126   Virulence effector SptP domain  
272560.BPSS1524   4.97e-43   26-127   Virulence effector SptP domain  
272994.SPAB_03580   4.32e-44   28-129   Virulence effector SptP domain  
28377.ENSACAP00000014607   3.27e-17   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
295319.SPA2736   7.85e-42   36-136   Virulence effector SptP domain  
300267.SDY_P170   0.000034   29-124   Virulence effector SptP domain  
300269.SSON_P094   0.000034   29-124   Virulence effector SptP domain  
31033.ENSTRUP00000040901   0.00000000000000883   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
320372.BURPS1710b_A0562   4.97e-43   26-127   Virulence effector SptP domain  
320373.BURPS668_A2153   4.97e-43   26-127   Virulence effector SptP domain  
320389.BMA10247_A0764   4.97e-43   26-127   Virulence effector SptP domain  
321314.SC2810   2.42e-43   36-137   Virulence effector SptP domain  
325240.Sbal_1967   1.96e-37   28-139   Virulence effector SptP domain  
344609.SbBS512_A0164   0.0000333   29-124   Virulence effector SptP domain  
357348.BURPS1106A_A2064   4.97e-43   26-127   Virulence effector SptP domain  
399599.Sbal195_2271   1.24e-33   28-118   Virulence effector SptP domain  
412022.BMA10229_2083   4.97e-43   26-127   Virulence effector SptP domain  
41514.SARI_00095   3.33e-27   16-116   Virulence effector SptP domain  
423368.SNSL254_A3083   4.32e-44   28-129   Virulence effector SptP domain  
439843.SeSA_A3031   7.19e-42   28-129   Virulence effector SptP domain  
439851.SeD_A3188   4.32e-44   28-129   Virulence effector SptP domain  
454166.SeAg_B3000   1.44e-43   28-127   Virulence effector SptP domain  
476213.SPC_2920   2.29e-43   15-116   Virulence effector SptP domain  
550537.SEN2720   4.45e-44   36-137   Virulence effector SptP domain  
550538.SG2781   4.45e-44   36-137   Virulence effector SptP domain  
554290.SSPA2550   3.66e-42   36-136   Virulence effector SptP domain  
69293.ENSGACP00000018692   0.0000000000000458   18-63   Ubiquinol-cytochrome c reductase 8 kDa protein  
7739.JGI116275   0.0000719   1-43   Ubiquinol-cytochrome c reductase 8 kDa protein  
7955.ENSDARP00000011707   1.54e-21   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
7955.ENSDARP00000099928   1.54e-21   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
8090.ENSORLP00000000780   8.17e-20   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
9031.ENSGALP00000007075   5.56e-19   1-55   Ubiquinol-cytochrome c reductase 8 kDa protein  
9361.ENSDNOP00000004892   1.44e-18   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
9544.ENSMMUP00000011034   9.48e-16   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
9544.ENSMMUP00000030343   1.6e-19   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9598.ENSPTRP00000018458   1.57e-17   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9598.ENSPTRP00000024815   1.24e-18   3-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9600.ENSPPYP00000010979   3.6e-19   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9606.ENSP00000306397   1.21e-19   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9615.ENSCAFP00000011310   3.2e-20   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9685.ENSFCAP00000008166   7.85e-22   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
9823.ENSSSCP00000003071   3.84e-20   1-57   Ubiquinol-cytochrome c reductase 8 kDa protein  
99287.STM2878   4.45e-44   36-137   Virulence effector SptP domain  
99883.ENSTNIP00000017208   5.23e-20   1-56   Ubiquinol-cytochrome c reductase 8 kDa protein  
 
Weak hits:
148305.A4QWN4   0.0628   71-112   Virulence effector SptP domain  
222523.BCE_1272   0.0562   9-30   Ubiquinol-cytochrome c reductase 8 kDa protein  
222929.C5P6E9   0.085   44-90   Virulence effector SptP domain  
267608.RSc1547   0.085   26-73   Virulence effector SptP domain  
309801.trd_0790   0.0981   68-99   Virulence effector SptP domain  
391774.Dvul_0457   0.0242   134-178   Virulence effector SptP domain  
395495.Lcho_2226   0.0144   1260-1311   Virulence effector SptP domain  
51453.JGI53239   0.0916   160-207   Phycoerythrin 545 alpha-subunits  
5518.FG01222.1   0.085   115-153   Phycoerythrin 545 alpha-subunits  
575788.VS_2009   0.0392   13-68   Phycoerythrin 545 alpha-subunits  
59689.Al_scaffold_0001_3786   0.0085   10-30   Phycoerythrin 545 alpha-subunits  
59689.Al_scaffold_0006_2790   0.0785   76-95   Phycoerythrin 545 alpha-subunits  
6945.ISCW014071-PA   0.0634   1-41   Ubiquinol-cytochrome c reductase 8 kDa protein  
7222.FBpp0148494   0.0817   7-38   Phycoerythrin 545 alpha-subunits  
7260.FBpp0243994   0.0948   83-116   Phycoerythrin 545 alpha-subunits  
882.DVU2908   0.0248   134-178   Virulence effector SptP domain  
9685.ENSFCAP00000009092   0.0981   15-44   Ubiquinol-cytochrome c reductase 8 kDa protein  
9986.ENSOCUP00000002242   0.000275   33-76   Ubiquinol-cytochrome c reductase 8 kDa protein  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8451 8451
No Yes Homo sapiens 76_38 Human 1 1
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 3
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 4 4
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 2 2
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 1
No Yes Danio rerio 76_9 Zebrafish 2 2
No Yes Guillardia theta CCMP2712 v1.0   21 20
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes NCBI 2017_08 genome   7389 7382
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   52 52
No Yes Uniprot 2018_03 genome   416 407
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   116 112
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   166 164
No Yes TargetDB (Targets)   3 3
No Yes The Salmonella enterica Pan-genome (meta-genome)   27 27

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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