SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Gorilla gorilla 69_3.1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Gorilla gorilla 69_3.1

Assignment details

(show help)


Gorilla gorilla 69_3.1 has 191 significant domains in 46 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000000037   0.000000000707   1314-1350   LDL receptor-like module  
  0.00000000445   1276-1312   LDL receptor-like module  
  0.00000000576   1236-1274   LDL receptor-like module  
ENSGGOP00000000602   0.0000000000314   688-726   LDL receptor-like module  
  0.000000654   228-268   LDL receptor-like module  
ENSGGOP00000000911   0.0000000000196   53-90   LDL receptor-like module  
  0.000000000055   125-167   LDL receptor-like module  
ENSGGOP00000001347   0.00000000000301   234-273   LDL receptor-like module  
  0.00000000000367   31-68   LDL receptor-like module  
  0.000000000013   149-188   LDL receptor-like module  
  0.0000000000419   272-312   LDL receptor-like module  
  0.000000000249   70-108   LDL receptor-like module  
  0.000000000995   187-225   LDL receptor-like module  
  0.00000000275   107-149   LDL receptor-like module  
  0.0000000406   318-355   LDL receptor-like module  
ENSGGOP00000002058   0.00000000125   1325-1363   LDL receptor-like module  
  0.0000000013   1246-1286   LDL receptor-like module  
  0.0000000038   1287-1323   LDL receptor-like module  
ENSGGOP00000002522   0.0000000000223   1417-1455   LDL receptor-like module  
  0.0000000000956   1197-1234   LDL receptor-like module  
  0.000000000105   1324-1360   LDL receptor-like module  
  0.00000000157   1076-1114   LDL receptor-like module  
  0.00000000262   1371-1404   LDL receptor-like module  
  0.0000000034   1239-1272   LDL receptor-like module  
  0.00000000353   1153-1194   LDL receptor-like module  
  0.0000000144   1471-1508   LDL receptor-like module  
  0.0000000314   1511-1550   LDL receptor-like module  
  0.000000301   1121-1154   LDL receptor-like module  
  0.0000034   1276-1311   LDL receptor-like module  
ENSGGOP00000002611   0.0000000127   41-80   LDL receptor-like module  
ENSGGOP00000003316   0.000000000537   258-297   LDL receptor-like module  
  0.0000000406   224-256   LDL receptor-like module  
ENSGGOP00000003392   0.00000157   153-192   LDL receptor-like module  
ENSGGOP00000003508   0.0000000000249   471-516   LDL receptor-like module  
  0.0000000615   546-585   LDL receptor-like module  
  0.000038   505-541   LDL receptor-like module  
ENSGGOP00000004300   0.000018   437-470   LDL receptor-like module  
ENSGGOP00000007309   0.0000000196   154-191   LDL receptor-like module  
ENSGGOP00000008050   0.0000000301   141-173   LDL receptor-like module  
ENSGGOP00000008372   0.000000144   123-156   LDL receptor-like module  
ENSGGOP00000008437   0.0000419   68-108   LDL receptor-like module  
  0.000209   31-66   LDL receptor-like module  
ENSGGOP00000009976   0.000000000055   848-890   LDL receptor-like module  
  0.000000000144   3569-3609   LDL receptor-like module  
  0.00000000017   929-968   LDL receptor-like module  
  0.000000000275   24-63   LDL receptor-like module  
  0.000000000275   3653-3698   LDL receptor-like module  
  0.000000000314   3487-3527   LDL receptor-like module  
  0.000000000314   3611-3647   LDL receptor-like module  
  0.000000000393   1013-1050   LDL receptor-like module  
  0.000000000393   2693-2730   LDL receptor-like module  
  0.000000000393   3369-3409   LDL receptor-like module  
  0.000000000419   889-931   LDL receptor-like module  
  0.000000000563   974-1011   LDL receptor-like module  
  0.000000000798   3531-3570   LDL receptor-like module  
  0.00000000144   1057-1097   LDL receptor-like module  
  0.00000000209   2560-2600   LDL receptor-like module  
  0.0000000034   3448-3485   LDL receptor-like module  
  0.0000000034   2733-2767   LDL receptor-like module  
  0.00000000537   2815-2851   LDL receptor-like module  
  0.00000000838   2600-2639   LDL receptor-like module  
  0.0000000107   3411-3449   LDL receptor-like module  
  0.0000000128   3331-3366   LDL receptor-like module  
  0.0000000144   2853-2892   LDL receptor-like module  
  0.000000017   2773-2807   LDL receptor-like module  
  0.0000000445   3740-3776   LDL receptor-like module  
  0.0000000563   2524-2561   LDL receptor-like module  
  0.000000183   71-106   LDL receptor-like module  
  0.000000301   1105-1140   LDL receptor-like module  
  0.000000393   1143-1178   LDL receptor-like module  
  0.00000126   2659-2689   LDL receptor-like module  
  0.0000209   3695-3731   LDL receptor-like module  
ENSGGOP00000010126   0.00000000825   246-282   LDL receptor-like module  
  0.00000122   407-441   LDL receptor-like module  
ENSGGOP00000010433   0.000000746   79-112   LDL receptor-like module  
  0.0000772   162-203   LDL receptor-like module  
  0.000131   127-156   LDL receptor-like module  
ENSGGOP00000010871   0.00000000144   384-425   LDL receptor-like module  
  0.00000000262   579-617   LDL receptor-like module  
  0.00000000327   655-699   LDL receptor-like module  
  0.00000000432   343-381   LDL receptor-like module  
  0.00000000602   270-307   LDL receptor-like module  
  0.00000000746   307-343   LDL receptor-like module  
  0.00000107   621-653   LDL receptor-like module  
ENSGGOP00000011631   0.000000000017   450-488   LDL receptor-like module  
  0.00000000275   164-200   LDL receptor-like module  
  0.00000013   411-449   LDL receptor-like module  
  0.000000144   212-254   LDL receptor-like module  
  0.000000733   374-411   LDL receptor-like module  
ENSGGOP00000012883   0.0000589   173-194   LDL receptor-like module  
ENSGGOP00000012925   0.000000000537   320-358   LDL receptor-like module  
  0.000000000602   365-408   LDL receptor-like module  
  0.000000000916   280-317   LDL receptor-like module  
  0.000000103   196-234   LDL receptor-like module  
ENSGGOP00000013189   0.0000000759   14-48   LDL receptor-like module  
ENSGGOP00000015315   0.0000000000209   398-436   LDL receptor-like module  
  0.000000000144   139-176   LDL receptor-like module  
  0.000183   328-353   LDL receptor-like module  
  0.00131   356-397   LDL receptor-like module  
ENSGGOP00000016223   0.0000000000223   29-65   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
  0.000000000524   110-147   LDL receptor-like module  
ENSGGOP00000016227   0.0000000000101   1815-1856   LDL receptor-like module  
  0.0000000000262   145-183   LDL receptor-like module  
  0.0000000000432   2067-2108   LDL receptor-like module  
  0.0000000000641   2707-2746   LDL receptor-like module  
  0.0000000000956   227-264   LDL receptor-like module  
  0.0000000000969   1937-1976   LDL receptor-like module  
  0.000000000118   345-386   LDL receptor-like module  
  0.00000000017   2106-2146   LDL receptor-like module  
  0.000000000249   2590-2626   LDL receptor-like module  
  0.000000000327   2798-2835   LDL receptor-like module  
  0.000000000563   2149-2189   LDL receptor-like module  
  0.000000000785   2837-2874   LDL receptor-like module  
  0.00000000104   1779-1822   LDL receptor-like module  
  0.00000000117   1984-2019   LDL receptor-like module  
  0.00000000144   186-223   LDL receptor-like module  
  0.00000000157   103-140   LDL receptor-like module  
  0.00000000209   2873-2913   LDL receptor-like module  
  0.00000000209   2921-2956   LDL receptor-like module  
  0.00000000275   2665-2709   LDL receptor-like module  
  0.00000000681   309-345   LDL receptor-like module  
  0.00000000838   266-304   LDL receptor-like module  
  0.00000000903   3006-3042   LDL receptor-like module  
  0.000000017   2627-2668   LDL receptor-like module  
  0.0000000209   1900-1939   LDL receptor-like module  
  0.0000000445   2962-3000   LDL receptor-like module  
  0.000000055   390-426   LDL receptor-like module  
  0.000000223   2023-2066   LDL receptor-like module  
  0.000000249   2761-2794   LDL receptor-like module  
  0.00000825   1863-1897   LDL receptor-like module  
ENSGGOP00000017089   0.000000034   290-326   LDL receptor-like module  
ENSGGOP00000017906   0.000000000694   20-60   LDL receptor-like module  
  0.000471   3-22   LDL receptor-like module  
ENSGGOP00000018251   0.00000000589   298-335   LDL receptor-like module  
ENSGGOP00000018403   0.000000000038   291-331   LDL receptor-like module  
  0.000000000157   255-293   LDL receptor-like module  
  0.000000000209   170-210   LDL receptor-like module  
  0.000000000484   95-133   LDL receptor-like module  
  0.000000000602   336-372   LDL receptor-like module  
  0.00000000419   131-169   LDL receptor-like module  
  0.00000000694   214-252   LDL receptor-like module  
  0.0000017   53-95   LDL receptor-like module  
ENSGGOP00000019184   0.000000314   6-39   LDL receptor-like module  
ENSGGOP00000020055   0.0000000484   108-139   LDL receptor-like module  
ENSGGOP00000021523   0.000000746   79-112   LDL receptor-like module  
  0.0000772   162-203   LDL receptor-like module  
  0.000131   127-156   LDL receptor-like module  
ENSGGOP00000021874   0.000000196   26-63   LDL receptor-like module  
ENSGGOP00000022408   0.00000000000759   103-144   LDL receptor-like module  
  0.0000000000327   142-184   LDL receptor-like module  
  0.000000000126   26-64   LDL receptor-like module  
  0.000000000196   196-232   LDL receptor-like module  
  0.00000000072   234-272   LDL receptor-like module  
  0.000000000759   66-104   LDL receptor-like module  
  0.0000000838   274-311   LDL receptor-like module  
ENSGGOP00000022907   0.00000000995   334-372   LDL receptor-like module  
ENSGGOP00000023205   0.000000000157   505-542   LDL receptor-like module  
  0.000000000406   433-468   LDL receptor-like module  
  0.00000000101   468-505   LDL receptor-like module  
  0.00000154   544-584   LDL receptor-like module  
ENSGGOP00000024580   0.000000000038   11-51   LDL receptor-like module  
ENSGGOP00000026836   0.00000000641   298-334   LDL receptor-like module  
ENSGGOP00000026869   0.0000000000851   77-118   LDL receptor-like module  
  0.000000000144   120-155   LDL receptor-like module  
  0.000000000183   200-236   LDL receptor-like module  
  0.000000000223   3-38   LDL receptor-like module  
  0.000000000275   235-275   LDL receptor-like module  
  0.00000000131   40-76   LDL receptor-like module  
  0.00000000236   283-320   LDL receptor-like module  
  0.000000393   159-192   LDL receptor-like module  
ENSGGOP00000026911   0.00000017   112-149   LDL receptor-like module  
ENSGGOP00000028374   0.0000000000471   450-487   LDL receptor-like module  
  0.00000000017   160-197   LDL receptor-like module  
  0.0000000011   206-245   LDL receptor-like module  
  0.00000236   411-448   LDL receptor-like module  
  0.00243   362-409   LDL receptor-like module  
ENSGGOP00000028688   0.000000327   485-516   LDL receptor-like module  
  0.000000367   521-560   LDL receptor-like module  
  0.0000262   450-482   LDL receptor-like module  
ENSGGOP00000028720   0.00000000109   48-90   LDL receptor-like module  
  0.00000000223   264-304   LDL receptor-like module  
  0.0000000115   976-1013   LDL receptor-like module  
  0.0000000314   758-794   LDL receptor-like module  
  0.0000000432   1017-1055   LDL receptor-like module  
  0.000000157   482-521   LDL receptor-like module  
  0.0000144   1059-1096   LDL receptor-like module  
ENSGGOP00000028733   0.0000000072   1374-1411   LDL receptor-like module  
  0.00000000825   1416-1453   LDL receptor-like module  
  0.00000000956   2464-2500   LDL receptor-like module  
  0.0000000103   1491-1529   LDL receptor-like module  
  0.0000000131   1451-1486   LDL receptor-like module  
  0.000000017   2389-2428   LDL receptor-like module  
  0.000000275   2233-2271   LDL receptor-like module  
  0.000000654   1562-1599   LDL receptor-like module  
  0.000000798   1602-1641   LDL receptor-like module  
  0.000034   1655-1681   LDL receptor-like module  
ENSGGOP00000028764   0.0000000458   224-262   LDL receptor-like module  
  0.000367   453-492   LDL receptor-like module  
  0.0284   28-51   LDL receptor-like module  
 
Weak hits:
ENSGGOP00000023483   0.000112   78-119   LDL receptor-like module  
ENSGGOP00000028487   0.000127   202-226   LDL receptor-like module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a LDL receptor-like module domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.