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LDL receptor-like module superfamily domain assignments
in
Tetranychus urticae

Assignment details

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Tetranychus urticae has 193 significant domains in 71 proteins.

     

Sequence ID   Evalue   Region   Family  
tetur01g01180   0.00000000089   437-475   LDL receptor-like module  
  0.000000209   475-510   LDL receptor-like module  
tetur01g03410   0.00000144   1151-1190   LDL receptor-like module  
  0.00000157   1374-1411   LDL receptor-like module  
  0.0000511   1009-1040   LDL receptor-like module  
tetur01g03800   0.00000017   15-54   LDL receptor-like module  
tetur01g08860   0.000000000419   46-85   LDL receptor-like module  
  0.0000301   84-113   LDL receptor-like module  
tetur01g09080   0.00000000838   161-195   LDL receptor-like module  
tetur02g03950   0.00000000223   68-107   LDL receptor-like module  
  0.0000000785   29-61   LDL receptor-like module  
tetur02g07340   0.00000000798   7-46   LDL receptor-like module  
tetur02g07350   0.0000000000563   232-267   LDL receptor-like module  
  0.0000000183   193-230   LDL receptor-like module  
tetur04g03020   0.0000000128   24-59   LDL receptor-like module  
  0.000000183   66-100   LDL receptor-like module  
tetur05g04130   0.0000785   6-29   LDL receptor-like module  
tetur05g04750   0.00000000471   233-274   LDL receptor-like module  
  0.00157   276-311   LDL receptor-like module  
tetur05g05630   0.00000183   1005-1038   LDL receptor-like module  
  0.00000236   1216-1259   LDL receptor-like module  
  0.00000733   827-861   LDL receptor-like module  
tetur05g05750   0.00000000301   119-156   LDL receptor-like module  
tetur07g00220   0.0000000017   456-491   LDL receptor-like module  
  0.0000000144   498-531   LDL receptor-like module  
  0.0000000196   267-300   LDL receptor-like module  
  0.000000668   347-383   LDL receptor-like module  
  0.00000353   416-450   LDL receptor-like module  
  0.0327   385-413   LDL receptor-like module  
tetur07g00560   0.00000000223   95-129   LDL receptor-like module  
tetur07g01130   0.000000419   14-49   LDL receptor-like module  
  0.000563   50-93   LDL receptor-like module  
tetur08g01870   0.000000000131   40-77   LDL receptor-like module  
  0.00000353   88-120   LDL receptor-like module  
tetur08g02480   0.00000000000157   116-159   LDL receptor-like module  
  0.0000000393   46-79   LDL receptor-like module  
  0.00000223   165-200   LDL receptor-like module  
  0.0000114   82-118   LDL receptor-like module  
tetur08g05000   0.00000102   1005-1039   LDL receptor-like module  
  0.00000126   1391-1427   LDL receptor-like module  
  0.000013   1170-1209   LDL receptor-like module  
tetur09g01380   0.00000000034   797-838   LDL receptor-like module  
  0.00000000223   758-796   LDL receptor-like module  
  0.00000000236   1327-1364   LDL receptor-like module  
  0.0000000072   677-714   LDL receptor-like module  
  0.00000000733   497-539   LDL receptor-like module  
  0.00000000929   539-578   LDL receptor-like module  
  0.00000000982   713-752   LDL receptor-like module  
  0.0000000123   846-883   LDL receptor-like module  
  0.0000000236   1290-1325   LDL receptor-like module  
  0.0000000851   460-494   LDL receptor-like module  
  0.000000223   592-625   LDL receptor-like module  
  0.000000406   631-674   LDL receptor-like module  
tetur09g01640   0.00000249   808-850   LDL receptor-like module  
  0.00000275   853-890   LDL receptor-like module  
  0.00000484   969-1006   LDL receptor-like module  
  0.00000537   893-929   LDL receptor-like module  
  0.00000838   934-970   LDL receptor-like module  
tetur09g01910   0.000000183   1660-1696   LDL receptor-like module  
  0.00000103   1268-1303   LDL receptor-like module  
  0.0000102   1889-1928   LDL receptor-like module  
  0.0000109   2078-2113   LDL receptor-like module  
  0.00131   1059-1092   LDL receptor-like module  
  0.0144   1489-1523   LDL receptor-like module  
tetur09g05380   0.000000000406   119-159   LDL receptor-like module  
  0.00000000117   80-121   LDL receptor-like module  
  0.0000000249   372-409   LDL receptor-like module  
  0.0000000458   336-369   LDL receptor-like module  
  0.000000602   300-332   LDL receptor-like module  
  0.00000458   454-497   LDL receptor-like module  
  0.00000602   46-82   LDL receptor-like module  
  0.0000563   198-241   LDL receptor-like module  
  0.0106   165-196   LDL receptor-like module  
  0.0537   417-456   LDL receptor-like module  
tetur10g00890   0.0000000000072   10-47   LDL receptor-like module  
  0.00000000000916   51-91   LDL receptor-like module  
  0.000000000236   95-131   LDL receptor-like module  
tetur10g00910   0.0000000000327   24-63   LDL receptor-like module  
  0.00000000209   67-101   LDL receptor-like module  
tetur10g01410   0.000000000144   586-624   LDL receptor-like module  
  0.00000000537   46-86   LDL receptor-like module  
tetur10g04150   0.00000000668   193-229   LDL receptor-like module  
tetur10g05360   0.00000000000903   137-174   LDL receptor-like module  
  0.00000000157   176-214   LDL receptor-like module  
tetur11g04260   0.00000000995   113-150   LDL receptor-like module  
tetur12g00690   0.00000000017   209-244   LDL receptor-like module  
  0.00000000576   251-284   LDL receptor-like module  
  0.00000000956   53-86   LDL receptor-like module  
  0.000000183   133-172   LDL receptor-like module  
  0.00000851   180-212   LDL receptor-like module  
  0.0956   111-131   LDL receptor-like module  
tetur12g02450   0.0000111   174-212   LDL receptor-like module  
tetur13g00200   0.000000000301   179-213   LDL receptor-like module  
tetur15g00150   0.000000223   44-82   LDL receptor-like module  
tetur15g03220   0.00000000654   196-232   LDL receptor-like module  
  0.000000176   125-171   LDL receptor-like module  
  0.000785   288-318   LDL receptor-like module  
tetur15g03390   0.000000000353   228-265   LDL receptor-like module  
  0.000000000367   268-306   LDL receptor-like module  
  0.000000000903   189-225   LDL receptor-like module  
  0.0000000798   310-350   LDL receptor-like module  
tetur16g02240   0.0000000000262   150-187   LDL receptor-like module  
tetur16g02250   0.000000000223   152-188   LDL receptor-like module  
tetur17g02800   0.000000249   823-858   LDL receptor-like module  
  0.000000746   939-973   LDL receptor-like module  
  0.00000249   1160-1204   LDL receptor-like module  
tetur17g02820   0.000000458   815-851   LDL receptor-like module  
  0.00000115   1000-1034   LDL receptor-like module  
  0.00000458   1214-1258   LDL receptor-like module  
tetur17g02830   0.000000419   534-566   LDL receptor-like module  
  0.0000694   356-388   LDL receptor-like module  
tetur19g02260   0.0000000196   159-200   LDL receptor-like module  
tetur19g02290   0.00000000432   84-125   LDL receptor-like module  
tetur20g01060   0.0000000000196   400-440   LDL receptor-like module  
  0.000000000107   364-402   LDL receptor-like module  
  0.000000000288   287-322   LDL receptor-like module  
  0.0000000353   326-362   LDL receptor-like module  
tetur20g01940   0.00000419   783-817   LDL receptor-like module  
tetur20g02240   0.00000406   805-838   LDL receptor-like module  
tetur21g01290   0.000000000157   682-719   LDL receptor-like module  
  0.000000000641   23-60   LDL receptor-like module  
  0.00000000275   644-680   LDL receptor-like module  
  0.0000000288   602-641   LDL receptor-like module  
  0.000000127   72-106   LDL receptor-like module  
  0.00000223   151-187   LDL receptor-like module  
  0.0000524   116-151   LDL receptor-like module  
tetur21g01660   0.0000000000838   114-155   LDL receptor-like module  
tetur22g00080   0.00000000471   187-223   LDL receptor-like module  
tetur25g01440   0.00000000000929   2514-2556   LDL receptor-like module  
  0.0000000000314   843-886   LDL receptor-like module  
  0.000000000262   964-1006   LDL receptor-like module  
  0.000000000262   3591-3628   LDL receptor-like module  
  0.000000000353   2817-2857   LDL receptor-like module  
  0.000000000511   884-923   LDL receptor-like module  
  0.000000000864   1049-1088   LDL receptor-like module  
  0.000000000982   2640-2681   LDL receptor-like module  
  0.00000000113   2779-2815   LDL receptor-like module  
  0.00000000127   3550-3587   LDL receptor-like module  
  0.00000000223   2862-2898   LDL receptor-like module  
  0.00000000668   929-966   LDL receptor-like module  
  0.00000000798   3635-3678   LDL receptor-like module  
  0.00000000916   3424-3461   LDL receptor-like module  
  0.00000000929   3676-3713   LDL receptor-like module  
  0.0000000105   3718-3756   LDL receptor-like module  
  0.000000013   2479-2517   LDL receptor-like module  
  0.0000000144   2688-2722   LDL receptor-like module  
  0.0000000157   3337-3378   LDL receptor-like module  
  0.0000000157   3508-3546   LDL receptor-like module  
  0.0000000196   3300-3340   LDL receptor-like module  
  0.0000000262   809-845   LDL receptor-like module  
  0.000000038   2603-2642   LDL receptor-like module  
  0.0000000628   3381-3418   LDL receptor-like module  
  0.00000017   2556-2590   LDL receptor-like module  
  0.00000034   1097-1132   LDL receptor-like module  
  0.00000109   1012-1048   LDL receptor-like module  
  0.00000196   3459-3502   LDL receptor-like module  
  0.00000759   2731-2771   LDL receptor-like module  
tetur26g00430   0.000000000484   52-90   LDL receptor-like module  
tetur26g00440   0.00000000000511   102-141   LDL receptor-like module  
  0.00000000288   66-101   LDL receptor-like module  
  0.0072   143-170   LDL receptor-like module  
tetur26g00450   0.0000000000707   39-78   LDL receptor-like module  
  0.000000012   4-36   LDL receptor-like module  
tetur26g00460   0.000000000877   277-315   LDL receptor-like module  
tetur26g00470   0.0000000681   53-89   LDL receptor-like module  
tetur26g00480   0.000000000602   151-191   LDL receptor-like module  
tetur26g00510   0.00000000236   51-92   LDL receptor-like module  
tetur26g00540   0.00000000131   284-324   LDL receptor-like module  
tetur26g00550   0.00000000654   54-92   LDL receptor-like module  
tetur26g00560   0.0000000000393   14-51   LDL receptor-like module  
  0.0000164   61-100   LDL receptor-like module  
tetur26g00570   0.0000000524   54-91   LDL receptor-like module  
tetur26g00600   0.000000000825   288-326   LDL receptor-like module  
tetur26g00610   0.000000000089   155-195   LDL receptor-like module  
  0.00000000034   81-113   LDL receptor-like module  
  0.00000000249   37-74   LDL receptor-like module  
  0.00000000733   116-152   LDL receptor-like module  
tetur26g00620   0.00000000105   85-127   LDL receptor-like module  
tetur26g00630   0.000000000157   219-260   LDL receptor-like module  
  0.000000000183   103-143   LDL receptor-like module  
  0.000000000654   310-349   LDL receptor-like module  
  0.00000000102   145-182   LDL receptor-like module  
  0.0000000038   268-308   LDL receptor-like module  
  0.00000000563   185-221   LDL receptor-like module  
  0.000000011   69-105   LDL receptor-like module  
tetur27g01310   0.000000000484   1073-1109   LDL receptor-like module  
  0.000000000628   995-1031   LDL receptor-like module  
  0.00000000111   1029-1069   LDL receptor-like module  
  0.0000000262   1107-1146   LDL receptor-like module  
  0.0000000537   1152-1190   LDL receptor-like module  
  0.000000072   1246-1281   LDL receptor-like module  
  0.000000196   86-121   LDL receptor-like module  
  0.000000275   1194-1236   LDL receptor-like module  
  0.000000314   955-992   LDL receptor-like module  
  0.000000746   173-207   LDL receptor-like module  
  0.000483   215-251   LDL receptor-like module  
tetur28g00020   0.0000000432   1252-1291   LDL receptor-like module  
  0.0000114   970-1003   LDL receptor-like module  
  0.000249   1045-1077   LDL receptor-like module  
  0.00183   2397-2429   LDL receptor-like module  
tetur29g00600   0.0000471   116-147   LDL receptor-like module  
  0.000327   150-189   LDL receptor-like module  
tetur30g01690   0.00000000275   62-100   LDL receptor-like module  
tetur31g00380   0.0000000000694   73-108   LDL receptor-like module  
  0.0000000034   33-70   LDL receptor-like module  
  0.000367   115-138   LDL receptor-like module  
tetur31g00390   0.00000000126   39-76   LDL receptor-like module  
  0.00107   80-103   LDL receptor-like module  
tetur38g00060   0.000000000497   125-162   LDL receptor-like module  
 
Weak hits:
tetur06g01900   0.000196   39-74   LDL receptor-like module  
  0.000238   76-116   LDL receptor-like module  
tetur06g03920   0.000628   519-554   LDL receptor-like module  
tetur12g04250   0.0144   114-151   LDL receptor-like module  
tetur13g02910   0.000491   838-870   LDL receptor-like module  
tetur14g02010   0.000484   66-94   LDL receptor-like module  
tetur19g02350   0.000654   16-43   LDL receptor-like module  
tetur37g00680   0.000119   171-202   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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