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  Home > Genomes > Pan troglodytes 76_2.1.4 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Pan troglodytes 76_2.1.4

Assignment details

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Pan troglodytes 76_2.1.4 has 216 significant domains in 47 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000000531   0.000000157   173-205   LDL receptor-like module  
ENSPTRP00000000536   0.000000000327   303-341   LDL receptor-like module  
  0.000000000367   348-391   LDL receptor-like module  
  0.00000000249   263-300   LDL receptor-like module  
  0.0000000628   179-217   LDL receptor-like module  
ENSPTRP00000001294   0.000000000275   162-198   LDL receptor-like module  
  0.000000000654   43-79   LDL receptor-like module  
  0.000000000812   256-292   LDL receptor-like module  
  0.000000000969   290-330   LDL receptor-like module  
  0.00000000275   82-125   LDL receptor-like module  
  0.00000000733   116-161   LDL receptor-like module  
  0.0000000196   202-242   LDL receptor-like module  
ENSPTRP00000001363   0.000000119   123-156   LDL receptor-like module  
ENSPTRP00000006091   0.0000000000223   29-65   LDL receptor-like module  
  0.000000000445   70-107   LDL receptor-like module  
  0.000000000524   110-147   LDL receptor-like module  
ENSPTRP00000006173   0.0000000000589   264-304   LDL receptor-like module  
  0.000000000157   228-266   LDL receptor-like module  
  0.000000000209   143-183   LDL receptor-like module  
  0.000000000419   66-105   LDL receptor-like module  
  0.000000000576   309-345   LDL receptor-like module  
  0.00000000497   186-225   LDL receptor-like module  
  0.0000000055   105-142   LDL receptor-like module  
  0.0000017   26-68   LDL receptor-like module  
ENSPTRP00000006855   0.000000000707   1315-1351   LDL receptor-like module  
  0.00000000445   1277-1313   LDL receptor-like module  
  0.00000000576   1237-1275   LDL receptor-like module  
ENSPTRP00000007428   0.000000249   54-93   LDL receptor-like module  
ENSPTRP00000007504   0.00000000589   258-294   LDL receptor-like module  
  0.00000124   419-453   LDL receptor-like module  
ENSPTRP00000007532   0.0000000000209   1392-1430   LDL receptor-like module  
  0.0000000000589   1171-1209   LDL receptor-like module  
  0.000000000103   1299-1335   LDL receptor-like module  
  0.000000000236   1128-1169   LDL receptor-like module  
  0.00000000157   1051-1089   LDL receptor-like module  
  0.00000000262   1346-1379   LDL receptor-like module  
  0.00000000353   1214-1247   LDL receptor-like module  
  0.0000000144   1446-1483   LDL receptor-like module  
  0.0000000314   1486-1525   LDL receptor-like module  
  0.000000113   1092-1131   LDL receptor-like module  
  0.0000034   1251-1286   LDL receptor-like module  
ENSPTRP00000007670   0.000000000432   453-488   LDL receptor-like module  
  0.00000000183   488-525   LDL receptor-like module  
  0.000000603   564-604   LDL receptor-like module  
ENSPTRP00000008035   0.000000000668   1325-1363   LDL receptor-like module  
  0.0000000013   1246-1286   LDL receptor-like module  
  0.0000000038   1287-1323   LDL receptor-like module  
ENSPTRP00000008707   0.0000000000524   847-889   LDL receptor-like module  
  0.000000000131   3436-3476   LDL receptor-like module  
  0.00000000017   928-967   LDL receptor-like module  
  0.000000000262   24-63   LDL receptor-like module  
  0.000000000262   3520-3565   LDL receptor-like module  
  0.000000000301   3354-3394   LDL receptor-like module  
  0.000000000301   3478-3514   LDL receptor-like module  
  0.00000000038   1012-1049   LDL receptor-like module  
  0.00000000038   3236-3276   LDL receptor-like module  
  0.000000000406   888-930   LDL receptor-like module  
  0.000000000537   973-1010   LDL receptor-like module  
  0.000000000772   3398-3437   LDL receptor-like module  
  0.00000000131   1056-1096   LDL receptor-like module  
  0.00000000196   2468-2508   LDL receptor-like module  
  0.00000000236   2600-2634   LDL receptor-like module  
  0.00000000327   3315-3352   LDL receptor-like module  
  0.00000000511   2682-2718   LDL receptor-like module  
  0.00000000798   2508-2547   LDL receptor-like module  
  0.0000000105   3278-3316   LDL receptor-like module  
  0.0000000123   3198-3233   LDL receptor-like module  
  0.000000013   2720-2759   LDL receptor-like module  
  0.000000017   2640-2674   LDL receptor-like module  
  0.0000000432   3607-3643   LDL receptor-like module  
  0.0000000537   2432-2469   LDL receptor-like module  
  0.000000183   71-106   LDL receptor-like module  
  0.000000288   1104-1139   LDL receptor-like module  
  0.00000038   1142-1177   LDL receptor-like module  
  0.00000838   2567-2596   LDL receptor-like module  
  0.0000196   3562-3598   LDL receptor-like module  
ENSPTRP00000009804   0.0000000126   41-80   LDL receptor-like module  
ENSPTRP00000011835   0.00000000497   334-372   LDL receptor-like module  
ENSPTRP00000017174   0.0000000327   290-326   LDL receptor-like module  
ENSPTRP00000017400   0.000000654   153-192   LDL receptor-like module  
ENSPTRP00000017725   0.0000000000576   123-165   LDL receptor-like module  
  0.000000903   53-88   LDL receptor-like module  
ENSPTRP00000017888   0.0000000000236   104-144   LDL receptor-like module  
  0.0000000000327   142-184   LDL receptor-like module  
  0.000000000101   26-70   LDL receptor-like module  
  0.000000000209   196-232   LDL receptor-like module  
  0.000000000393   66-104   LDL receptor-like module  
  0.000000000746   234-272   LDL receptor-like module  
  0.0000000877   274-311   LDL receptor-like module  
ENSPTRP00000017915   0.0000353   68-108   LDL receptor-like module  
  0.000183   31-66   LDL receptor-like module  
ENSPTRP00000018497   0.0000000000484   454-491   LDL receptor-like module  
  0.000000000275   164-201   LDL receptor-like module  
  0.0000000011   210-249   LDL receptor-like module  
  0.00000236   415-452   LDL receptor-like module  
  0.00243   366-413   LDL receptor-like module  
ENSPTRP00000021397   0.000000000034   3643-3683   LDL receptor-like module  
  0.000000000131   763-808   LDL receptor-like module  
  0.000000000209   728-764   LDL receptor-like module  
  0.000000000223   806-846   LDL receptor-like module  
  0.000000000223   3517-3553   LDL receptor-like module  
  0.000000000484   2776-2817   LDL receptor-like module  
  0.00000000055   3478-3515   LDL receptor-like module  
  0.000000000602   2645-2681   LDL receptor-like module  
  0.000000000733   3238-3278   LDL receptor-like module  
  0.000000000746   851-889   LDL receptor-like module  
  0.000000000785   3438-3473   LDL receptor-like module  
  0.00000000089   3559-3604   LDL receptor-like module  
  0.00000000113   3360-3396   LDL receptor-like module  
  0.00000000144   890-928   LDL receptor-like module  
  0.00000000209   2566-2602   LDL receptor-like module  
  0.0000000034   2431-2472   LDL receptor-like module  
  0.00000000393   2687-2723   LDL receptor-like module  
  0.00000000497   938-974   LDL receptor-like module  
  0.00000000576   3395-3435   LDL receptor-like module  
  0.00000000589   3321-3357   LDL receptor-like module  
  0.00000000602   3201-3236   LDL receptor-like module  
  0.0000000131   2475-2512   LDL receptor-like module  
  0.0000000144   3280-3317   LDL receptor-like module  
  0.0000000183   2605-2647   LDL receptor-like module  
  0.000000157   2396-2433   LDL receptor-like module  
  0.000000183   2725-2765   LDL receptor-like module  
  0.000000196   2525-2561   LDL receptor-like module  
  0.00000106   984-1017   LDL receptor-like module  
  0.00000117   1020-1056   LDL receptor-like module  
  0.0000122   3605-3637   LDL receptor-like module  
ENSPTRP00000021546   0.000000000013   2735-2776   LDL receptor-like module  
  0.0000000000327   1065-1103   LDL receptor-like module  
  0.000000000055   2987-3028   LDL receptor-like module  
  0.0000000000772   3627-3666   LDL receptor-like module  
  0.00000000012   1147-1184   LDL receptor-like module  
  0.000000000126   2857-2896   LDL receptor-like module  
  0.000000000144   1265-1306   LDL receptor-like module  
  0.000000000209   3026-3066   LDL receptor-like module  
  0.000000000288   3069-3109   LDL receptor-like module  
  0.000000000288   3510-3546   LDL receptor-like module  
  0.000000000419   3718-3755   LDL receptor-like module  
  0.000000000733   102-143   LDL receptor-like module  
  0.000000000733   3753-3793   LDL receptor-like module  
  0.000000000838   26-63   LDL receptor-like module  
  0.00000000114   2699-2742   LDL receptor-like module  
  0.00000000144   2904-2939   LDL receptor-like module  
  0.00000000157   182-217   LDL receptor-like module  
  0.0000000017   215-256   LDL receptor-like module  
  0.00000000183   1106-1143   LDL receptor-like module  
  0.00000000209   1023-1060   LDL receptor-like module  
  0.00000000209   3841-3876   LDL receptor-like module  
  0.00000000275   3793-3833   LDL receptor-like module  
  0.00000000327   3585-3629   LDL receptor-like module  
  0.00000000864   1229-1265   LDL receptor-like module  
  0.0000000106   1186-1224   LDL receptor-like module  
  0.0000000115   3926-3962   LDL receptor-like module  
  0.0000000119   65-101   LDL receptor-like module  
  0.0000000144   3546-3587   LDL receptor-like module  
  0.0000000209   264-301   LDL receptor-like module  
  0.0000000262   2820-2859   LDL receptor-like module  
  0.0000000537   3882-3920   LDL receptor-like module  
  0.0000000707   1310-1346   LDL receptor-like module  
  0.000000288   2943-2986   LDL receptor-like module  
  0.000000327   3681-3714   LDL receptor-like module  
  0.00000236   146-180   LDL receptor-like module  
  0.0000102   2783-2817   LDL receptor-like module  
ENSPTRP00000023779   0.0000000000128   640-678   LDL receptor-like module  
  0.000000641   183-222   LDL receptor-like module  
ENSPTRP00000023965   0.000000118   112-149   LDL receptor-like module  
ENSPTRP00000023992   0.00000000681   154-192   LDL receptor-like module  
ENSPTRP00000024201   0.0000000000223   25-67   LDL receptor-like module  
ENSPTRP00000024675   0.0000000903   494-525   LDL receptor-like module  
  0.0000131   459-492   LDL receptor-like module  
ENSPTRP00000026244   0.0000000000209   355-392   LDL receptor-like module  
  0.0000000301   432-471   LDL receptor-like module  
  0.0000314   391-427   LDL receptor-like module  
ENSPTRP00000027587   0.00000000262   578-616   LDL receptor-like module  
  0.00000000327   654-698   LDL receptor-like module  
  0.00000000497   342-380   LDL receptor-like module  
  0.00000000589   269-306   LDL receptor-like module  
  0.0000000144   379-416   LDL receptor-like module  
  0.000000017   305-343   LDL receptor-like module  
  0.00000107   620-652   LDL receptor-like module  
ENSPTRP00000028833   0.0000000471   103-134   LDL receptor-like module  
ENSPTRP00000028843   0.0000000157   141-173   LDL receptor-like module  
ENSPTRP00000031912   0.00000000602   308-345   LDL receptor-like module  
ENSPTRP00000035056   0.000000000017   443-481   LDL receptor-like module  
  0.00000000196   157-193   LDL receptor-like module  
  0.000000128   404-442   LDL receptor-like module  
  0.000000144   205-247   LDL receptor-like module  
  0.000000929   367-404   LDL receptor-like module  
ENSPTRP00000036945   0.0000000314   224-263   LDL receptor-like module  
  0.000327   455-494   LDL receptor-like module  
  0.0303   28-50   LDL receptor-like module  
ENSPTRP00000043217   0.0000000000209   398-436   LDL receptor-like module  
  0.000000000144   139-176   LDL receptor-like module  
  0.000183   328-353   LDL receptor-like module  
  0.00131   356-397   LDL receptor-like module  
ENSPTRP00000043774   0.0000000759   14-48   LDL receptor-like module  
ENSPTRP00000046097   0.0000118   98-130   LDL receptor-like module  
ENSPTRP00000047055   0.000000196   26-63   LDL receptor-like module  
ENSPTRP00000049510   0.00000000000223   234-273   LDL receptor-like module  
  0.00000000000367   31-68   LDL receptor-like module  
  0.0000000000209   149-188   LDL receptor-like module  
  0.0000000000419   272-312   LDL receptor-like module  
  0.000000000249   70-108   LDL receptor-like module  
  0.000000000995   187-225   LDL receptor-like module  
  0.00000000275   107-149   LDL receptor-like module  
  0.0000000406   318-355   LDL receptor-like module  
ENSPTRP00000050749   0.00000000111   570-608   LDL receptor-like module  
  0.00000000157   352-394   LDL receptor-like module  
  0.000000017   1280-1317   LDL receptor-like module  
  0.0000000445   1062-1098   LDL receptor-like module  
  0.0000000563   1321-1359   LDL receptor-like module  
  0.000000262   786-825   LDL receptor-like module  
  0.000000275   133-167   LDL receptor-like module  
  0.0000641   1363-1400   LDL receptor-like module  
ENSPTRP00000052282   0.000000877   79-112   LDL receptor-like module  
  0.0000772   162-203   LDL receptor-like module  
  0.000131   127-156   LDL receptor-like module  
ENSPTRP00000053358   0.000000000654   258-296   LDL receptor-like module  
  0.0000000406   224-256   LDL receptor-like module  
ENSPTRP00000053581   0.00000000812   284-320   LDL receptor-like module  
ENSPTRP00000057474   0.00000000000969   24-63   LDL receptor-like module  
  0.00000000537   71-106   LDL receptor-like module  
ENSPTRP00000059899   0.0000302   78-119   LDL receptor-like module  
ENSPTRP00000060924   0.0000223   78-119   LDL receptor-like module  
 
Weak hits:
ENSPTRP00000039456   0.000101   78-119   LDL receptor-like module  
ENSPTRP00000047622   0.000107   188-212   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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