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  Home > Genomes > Gorilla gorilla 69_3.1 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Gorilla gorilla 69_3.1

Assignment details

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Gorilla gorilla 69_3.1 has 253 significant domains in 63 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000000805   0.0000000000000157   558-613   TSP-1 type 1 repeat  
  0.0000000262   973-1021   TSP-1 type 1 repeat  
  0.0000000314   906-973   TSP-1 type 1 repeat  
  0.000000112   850-911   TSP-1 type 1 repeat  
ENSGGOP00000001430   0.0000000000876   823-880   TSP-1 type 1 repeat  
  0.000000000249   647-704   TSP-1 type 1 repeat  
  0.000000000262   705-761   TSP-1 type 1 repeat  
  0.00000000124   884-935   TSP-1 type 1 repeat  
  0.000000432   52-81   TSP-1 type 1 repeat  
  0.00000183   765-818   TSP-1 type 1 repeat  
  0.00000562   594-644   TSP-1 type 1 repeat  
ENSGGOP00000001656   0.00000000000000144   4596-4654   TSP-1 type 1 repeat  
  0.0000000000000109   4484-4540   TSP-1 type 1 repeat  
  0.0000000000000123   4539-4597   TSP-1 type 1 repeat  
  0.0000000000000126   4768-4825   TSP-1 type 1 repeat  
  0.0000000000000628   4654-4711   TSP-1 type 1 repeat  
  0.000000000000785   4710-4768   TSP-1 type 1 repeat  
ENSGGOP00000002072   0.00000000000000876   242-292   TSP-1 type 1 repeat  
  0.000000000706   296-350   TSP-1 type 1 repeat  
ENSGGOP00000002105   0.00000000000116   228-286   TSP-1 type 1 repeat  
  0.0000000000275   292-350   TSP-1 type 1 repeat  
  0.000000000275   412-464   TSP-1 type 1 repeat  
  0.00000000366   349-406   TSP-1 type 1 repeat  
ENSGGOP00000002511   0.000000000000262   557-609   TSP-1 type 1 repeat  
  0.0000000000235   1206-1265   TSP-1 type 1 repeat  
  0.0000000000379   1356-1417   TSP-1 type 1 repeat  
  0.000000000183   1076-1136   TSP-1 type 1 repeat  
  0.000000000471   1156-1209   TSP-1 type 1 repeat  
  0.00000000196   963-1024   TSP-1 type 1 repeat  
  0.00000000445   1020-1079   TSP-1 type 1 repeat  
  0.00000000615   1305-1361   TSP-1 type 1 repeat  
  0.00000000968   1657-1711   TSP-1 type 1 repeat  
  0.0000000405   1422-1476   TSP-1 type 1 repeat  
  0.000000602   1471-1532   TSP-1 type 1 repeat  
  0.00000549   851-904   TSP-1 type 1 repeat  
  0.0157   913-964   TSP-1 type 1 repeat  
  0.017   1598-1640   TSP-1 type 1 repeat  
ENSGGOP00000002663   0.00000068   221-261   TSP-1 type 1 repeat  
ENSGGOP00000002670   0.00000000379   277-325   TSP-1 type 1 repeat  
ENSGGOP00000002735   0.0000314   206-249   TSP-1 type 1 repeat  
ENSGGOP00000002849   0.00000000000000889   436-491   TSP-1 type 1 repeat  
  0.000000000523   382-430   TSP-1 type 1 repeat  
ENSGGOP00000003522   0.00000000000000484   550-605   TSP-1 type 1 repeat  
  0.000000000144   969-1015   TSP-1 type 1 repeat  
  0.00000000183   908-966   TSP-1 type 1 repeat  
  0.00000000641   846-904   TSP-1 type 1 repeat  
ENSGGOP00000004795   0.0000119   229-273   TSP-1 type 1 repeat  
ENSGGOP00000005271   0.00000405   144-196   TSP-1 type 1 repeat  
ENSGGOP00000005864   0.0000000000144   143-196   TSP-1 type 1 repeat  
ENSGGOP00000006649   0.0000000000000497   216-266   TSP-1 type 1 repeat  
  0.00000000124   272-319   TSP-1 type 1 repeat  
ENSGGOP00000006825   0.00000575   227-272   TSP-1 type 1 repeat  
ENSGGOP00000006847   0.0000000000000811   567-621   TSP-1 type 1 repeat  
  0.000000353   877-930   TSP-1 type 1 repeat  
ENSGGOP00000007199   0.00000000000000109   557-613   TSP-1 type 1 repeat  
  0.000000000876   905-966   TSP-1 type 1 repeat  
  0.0000000068   856-909   TSP-1 type 1 repeat  
ENSGGOP00000007349   0.0000000000000157   514-570   TSP-1 type 1 repeat  
  0.000000000863   890-950   TSP-1 type 1 repeat  
  0.00000000916   839-891   TSP-1 type 1 repeat  
ENSGGOP00000007543   0.00000589   147-200   TSP-1 type 1 repeat  
ENSGGOP00000007553   0.00000000000000497   530-586   TSP-1 type 1 repeat  
ENSGGOP00000007555   0.000000000000011   458-508   TSP-1 type 1 repeat  
  0.000000000183   888-944   TSP-1 type 1 repeat  
  0.00000000288   778-837   TSP-1 type 1 repeat  
  0.0000000109   840-883   TSP-1 type 1 repeat  
  0.0000000615   718-777   TSP-1 type 1 repeat  
ENSGGOP00000007842   0.00000000000196   192-239   TSP-1 type 1 repeat  
  0.00000000000811   1281-1338   TSP-1 type 1 repeat  
  0.0000000000366   628-692   TSP-1 type 1 repeat  
  0.00000000157   1029-1088   TSP-1 type 1 repeat  
  0.0000000106   358-411   TSP-1 type 1 repeat  
  0.000000144   769-822   TSP-1 type 1 repeat  
  0.000000249   695-764   TSP-1 type 1 repeat  
  0.000000314   1412-1467   TSP-1 type 1 repeat  
  0.0000111   1087-1157   TSP-1 type 1 repeat  
  0.0000124   1336-1386   TSP-1 type 1 repeat  
  0.0000157   1163-1213   TSP-1 type 1 repeat  
  0.0000706   900-955   TSP-1 type 1 repeat  
  0.0000837   418-493   TSP-1 type 1 repeat  
  0.000497   1216-1271   TSP-1 type 1 repeat  
  0.00327   506-571   TSP-1 type 1 repeat  
  0.0209   961-1028   TSP-1 type 1 repeat  
ENSGGOP00000008050   0.00000000131   564-612   TSP-1 type 1 repeat  
  0.0000000249   24-78   TSP-1 type 1 repeat  
  0.000000575   80-128   TSP-1 type 1 repeat  
ENSGGOP00000008372   0.000000000327   544-590   TSP-1 type 1 repeat  
  0.0000102   63-111   TSP-1 type 1 repeat  
ENSGGOP00000008516   0.00000000000314   257-308   TSP-1 type 1 repeat  
  0.00000000000654   137-186   TSP-1 type 1 repeat  
  0.000000000196   189-249   TSP-1 type 1 repeat  
  0.00000000262   77-132   TSP-1 type 1 repeat  
  0.0000000628   311-371   TSP-1 type 1 repeat  
  0.00000602   376-415   TSP-1 type 1 repeat  
ENSGGOP00000008788   0.0000000000000379   368-424   TSP-1 type 1 repeat  
  0.000000000000706   429-479   TSP-1 type 1 repeat  
  0.00000000000379   482-537   TSP-1 type 1 repeat  
  0.0000000000314   316-365   TSP-1 type 1 repeat  
  0.0000000131   218-261   TSP-1 type 1 repeat  
ENSGGOP00000009409   0.000000000000209   546-601   TSP-1 type 1 repeat  
  0.0000000034   888-944   TSP-1 type 1 repeat  
  0.0000000157   825-884   TSP-1 type 1 repeat  
  0.0000000497   943-1002   TSP-1 type 1 repeat  
  0.0000000654   1001-1054   TSP-1 type 1 repeat  
ENSGGOP00000009479   0.00000000000000262   541-596   TSP-1 type 1 repeat  
  0.0000000017   1472-1531   TSP-1 type 1 repeat  
  0.00000000549   944-996   TSP-1 type 1 repeat  
  0.0000000628   824-882   TSP-1 type 1 repeat  
  0.00000017   1419-1472   TSP-1 type 1 repeat  
  0.000000392   1360-1424   TSP-1 type 1 repeat  
  0.000000405   1315-1365   TSP-1 type 1 repeat  
  0.00000124   881-940   TSP-1 type 1 repeat  
ENSGGOP00000009488   0.000000000222   179-226   TSP-1 type 1 repeat  
  0.000000000471   1248-1298   TSP-1 type 1 repeat  
  0.000000000824   597-660   TSP-1 type 1 repeat  
  0.00000000327   1000-1043   TSP-1 type 1 repeat  
  0.0000000222   336-389   TSP-1 type 1 repeat  
  0.000000196   1054-1123   TSP-1 type 1 repeat  
  0.00000034   664-732   TSP-1 type 1 repeat  
  0.000000432   1368-1432   TSP-1 type 1 repeat  
  0.00000051   737-789   TSP-1 type 1 repeat  
  0.00000327   1129-1177   TSP-1 type 1 repeat  
  0.0000183   921-995   TSP-1 type 1 repeat  
  0.0000183   1301-1355   TSP-1 type 1 repeat  
  0.0000759   1181-1232   TSP-1 type 1 repeat  
  0.00017   795-866   TSP-1 type 1 repeat  
  0.000353   42-94   TSP-1 type 1 repeat  
  0.00068   102-174   TSP-1 type 1 repeat  
  0.000994   867-921   TSP-1 type 1 repeat  
  0.00249   397-479   TSP-1 type 1 repeat  
  0.00249   480-542   TSP-1 type 1 repeat  
ENSGGOP00000009640   6.54e-16   463-519   TSP-1 type 1 repeat  
ENSGGOP00000010654   0.000000000222   669-728   TSP-1 type 1 repeat  
  0.000000000458   1540-1607   TSP-1 type 1 repeat  
  0.000000000981   783-849   TSP-1 type 1 repeat  
  0.00000000157   432-492   TSP-1 type 1 repeat  
  0.00000000693   32-81   TSP-1 type 1 repeat  
  0.0000000119   729-788   TSP-1 type 1 repeat  
  0.0000000144   376-437   TSP-1 type 1 repeat  
  0.0000000262   529-583   TSP-1 type 1 repeat  
  0.000000209   1669-1725   TSP-1 type 1 repeat  
  0.000000249   296-359   TSP-1 type 1 repeat  
  0.000000484   610-666   TSP-1 type 1 repeat  
  0.000118   1607-1666   TSP-1 type 1 repeat  
  0.000183   1486-1545   TSP-1 type 1 repeat  
ENSGGOP00000010854   0.0000000000772   962-1020   TSP-1 type 1 repeat  
  0.00000000798   158-214   TSP-1 type 1 repeat  
  0.0000000107   732-798   TSP-1 type 1 repeat  
  0.0000000262   853-907   TSP-1 type 1 repeat  
  0.000000366   907-967   TSP-1 type 1 repeat  
  0.00000222   675-735   TSP-1 type 1 repeat  
  0.0000824   800-850   TSP-1 type 1 repeat  
ENSGGOP00000011112   0.000000000562   502-556   TSP-1 type 1 repeat  
  0.00000000458   829-879   TSP-1 type 1 repeat  
  0.00000000863   1457-1516   TSP-1 type 1 repeat  
  0.00000114   1407-1458   TSP-1 type 1 repeat  
  0.00000889   1346-1409   TSP-1 type 1 repeat  
  0.0000366   1300-1351   TSP-1 type 1 repeat  
  0.0654   784-827   TSP-1 type 1 repeat  
ENSGGOP00000011151   5.75e-17   671-729   TSP-1 type 1 repeat  
  0.0000000000000017   429-479   TSP-1 type 1 repeat  
  0.00000000000000183   617-668   TSP-1 type 1 repeat  
  0.000000000628   484-535   TSP-1 type 1 repeat  
  0.0000000562   730-775   TSP-1 type 1 repeat  
ENSGGOP00000011341   0.0000000000000183   245-296   TSP-1 type 1 repeat  
  0.000000000196   298-353   TSP-1 type 1 repeat  
ENSGGOP00000011812   0.0000000000000419   259-310   TSP-1 type 1 repeat  
  0.0000000017   313-367   TSP-1 type 1 repeat  
ENSGGOP00000011825   0.00000000000366   610-665   TSP-1 type 1 repeat  
  0.00000000000628   554-610   TSP-1 type 1 repeat  
  0.0000000000301   665-720   TSP-1 type 1 repeat  
  0.000000000916   501-551   TSP-1 type 1 repeat  
  0.0000000144   754-807   TSP-1 type 1 repeat  
  0.000000732   443-489   TSP-1 type 1 repeat  
ENSGGOP00000011930   0.0000000000405   706-759   TSP-1 type 1 repeat  
  0.000000000589   419-479   TSP-1 type 1 repeat  
  0.00000000183   474-534   TSP-1 type 1 repeat  
  0.00000000196   571-625   TSP-1 type 1 repeat  
  0.0000000209   75-123   TSP-1 type 1 repeat  
  0.0000000353   1425-1483   TSP-1 type 1 repeat  
  0.0000000458   759-819   TSP-1 type 1 repeat  
  0.000000124   1477-1544   TSP-1 type 1 repeat  
  0.000000222   815-880   TSP-1 type 1 repeat  
  0.00000118   1599-1655   TSP-1 type 1 repeat  
  0.0000034   341-401   TSP-1 type 1 repeat  
  0.00000562   647-703   TSP-1 type 1 repeat  
ENSGGOP00000012074   0.00000000000000575   555-605   TSP-1 type 1 repeat  
  0.000000000732   974-1024   TSP-1 type 1 repeat  
  0.0000000144   912-971   TSP-1 type 1 repeat  
  0.000000602   851-909   TSP-1 type 1 repeat  
ENSGGOP00000012247   0.00000000000000196   386-442   TSP-1 type 1 repeat  
  0.0000000262   1070-1134   TSP-1 type 1 repeat  
  0.0000000798   741-808   TSP-1 type 1 repeat  
  0.000000876   1022-1076   TSP-1 type 1 repeat  
  0.0000115   952-1016   TSP-1 type 1 repeat  
  0.0017   687-746   TSP-1 type 1 repeat  
  0.0366   903-955   TSP-1 type 1 repeat  
ENSGGOP00000012673   2.49e-17   489-546   TSP-1 type 1 repeat  
  3.79e-16   435-484   TSP-1 type 1 repeat  
  0.000000000144   379-428   TSP-1 type 1 repeat  
ENSGGOP00000013632   0.000000000209   539-584   TSP-1 type 1 repeat  
  0.0000105   37-84   TSP-1 type 1 repeat  
ENSGGOP00000014510   7.06e-16   583-640   TSP-1 type 1 repeat  
  0.000000000119   1128-1177   TSP-1 type 1 repeat  
  0.00000000222   921-986   TSP-1 type 1 repeat  
  0.00000000301   989-1047   TSP-1 type 1 repeat  
  0.000000471   1054-1114   TSP-1 type 1 repeat  
  0.0458   879-927   TSP-1 type 1 repeat  
ENSGGOP00000014832   0.0000102   214-259   TSP-1 type 1 repeat  
ENSGGOP00000015032   0.0000000102   74-121   TSP-1 type 1 repeat  
ENSGGOP00000015169   0.0000000000000536   586-642   TSP-1 type 1 repeat  
  0.0000000000445   1107-1165   TSP-1 type 1 repeat  
  0.0000000000549   1183-1239   TSP-1 type 1 repeat  
  0.0000000000746   1380-1439   TSP-1 type 1 repeat  
  0.0000000017   1049-1108   TSP-1 type 1 repeat  
  0.00000000379   993-1053   TSP-1 type 1 repeat  
  0.00000000432   1234-1295   TSP-1 type 1 repeat  
  0.00000000706   1327-1383   TSP-1 type 1 repeat  
  0.0000000196   1444-1498   TSP-1 type 1 repeat  
  0.0000562   1498-1526   TSP-1 type 1 repeat  
  0.0000615   877-932   TSP-1 type 1 repeat  
  0.00876   938-993   TSP-1 type 1 repeat  
ENSGGOP00000015738   0.000000000000314   556-612   TSP-1 type 1 repeat  
  0.000000000112   842-899   TSP-1 type 1 repeat  
  0.000000000667   903-959   TSP-1 type 1 repeat  
  0.0000000126   1017-1068   TSP-1 type 1 repeat  
  0.00000183   962-1017   TSP-1 type 1 repeat  
ENSGGOP00000015751   0.00000000144   997-1048   TSP-1 type 1 repeat  
  0.0000000034   935-993   TSP-1 type 1 repeat  
  0.00000000706   748-806   TSP-1 type 1 repeat  
  0.0000000085   44-75   TSP-1 type 1 repeat  
  0.0000000131   806-864   TSP-1 type 1 repeat  
  0.000000824   868-931   TSP-1 type 1 repeat  
  0.000458   691-746   TSP-1 type 1 repeat  
ENSGGOP00000016226   0.0000000000000693   361-416   TSP-1 type 1 repeat  
  0.00000000000131   310-356   TSP-1 type 1 repeat  
  0.00000000034   416-471   TSP-1 type 1 repeat  
  0.000000000706   475-522   TSP-1 type 1 repeat  
ENSGGOP00000016889   0.0000536   193-238   TSP-1 type 1 repeat  
ENSGGOP00000019805   0.00000000523   812-868   TSP-1 type 1 repeat  
  0.00000000602   747-808   TSP-1 type 1 repeat  
  0.0000000301   467-517   TSP-1 type 1 repeat  
  0.0000000471   870-914   TSP-1 type 1 repeat  
ENSGGOP00000020055   0.00000432   46-94   TSP-1 type 1 repeat  
ENSGGOP00000020630   0.0000000131   146-201   TSP-1 type 1 repeat  
ENSGGOP00000023080   0.000000000275   343-393   TSP-1 type 1 repeat  
ENSGGOP00000023250   0.00000157   285-321   TSP-1 type 1 repeat  
ENSGGOP00000023483   0.0000000011   490-536   TSP-1 type 1 repeat  
  0.000000131   26-73   TSP-1 type 1 repeat  
ENSGGOP00000023646   0.00000275   197-241   TSP-1 type 1 repeat  
ENSGGOP00000024247   0.0000000000000034   850-907   TSP-1 type 1 repeat  
  0.00000000000000968   664-714   TSP-1 type 1 repeat  
  0.000000000000196   907-964   TSP-1 type 1 repeat  
  0.000000000301   718-770   TSP-1 type 1 repeat  
  0.0000157   965-1009   TSP-1 type 1 repeat  
  0.000144   609-661   TSP-1 type 1 repeat  
ENSGGOP00000025046   0.000000000759   45-96   TSP-1 type 1 repeat  
ENSGGOP00000027229   0.0000000144   567-619   TSP-1 type 1 repeat  
  0.000000772   618-676   TSP-1 type 1 repeat  
  0.0000706   459-512   TSP-1 type 1 repeat  
  0.00458   1-42   TSP-1 type 1 repeat  
  0.0262   511-532   TSP-1 type 1 repeat  
ENSGGOP00000028612   8.63e-17   586-643   TSP-1 type 1 repeat  
  0.00000000405   930-991   TSP-1 type 1 repeat  
  0.00000262   991-1018   TSP-1 type 1 repeat  
  0.000183   883-931   TSP-1 type 1 repeat  
ENSGGOP00000028733   0.00000000000000654   2554-2611   TSP-1 type 1 repeat  
  0.00000000000196   2827-2883   TSP-1 type 1 repeat  
  0.0000000000051   3255-3303   TSP-1 type 1 repeat  
  0.0000000000196   2717-2767   TSP-1 type 1 repeat  
  0.0000000017   2985-3035   TSP-1 type 1 repeat  
  0.0000000366   1749-1802   TSP-1 type 1 repeat  
  0.0000000536   1694-1743   TSP-1 type 1 repeat  
  0.000000327   2501-2554   TSP-1 type 1 repeat  
  0.0000105   1906-1964   TSP-1 type 1 repeat  
  0.0000116   3043-3084   TSP-1 type 1 repeat  
  0.000107   2776-2823   TSP-1 type 1 repeat  
 
Weak hits:
ENSGGOP00000006568   0.000837   138-190   TSP-1 type 1 repeat  
ENSGGOP00000018866   0.0602   205-253   TSP-1 type 1 repeat  
ENSGGOP00000022053   0.00314   142-179   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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