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  Home > Genomes > Nomascus leucogenys 76_1.0 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Nomascus leucogenys 76_1.0

Assignment details

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Nomascus leucogenys 76_1.0 has 247 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000000392   0.00000000000000327   825-882   TSP-1 type 1 repeat  
  0.00000000000000942   645-695   TSP-1 type 1 repeat  
  0.000000000000196   882-939   TSP-1 type 1 repeat  
  0.0000183   940-984   TSP-1 type 1 repeat  
  0.000131   590-642   TSP-1 type 1 repeat  
ENSNLEP00000000603   0.0000000000000536   342-397   TSP-1 type 1 repeat  
  0.000000000000314   397-452   TSP-1 type 1 repeat  
  0.0000000000085   294-337   TSP-1 type 1 repeat  
  0.00000000366   452-507   TSP-1 type 1 repeat  
ENSNLEP00000001097   0.0000000000000772   95-151   TSP-1 type 1 repeat  
  0.00000000235   501-539   TSP-1 type 1 repeat  
  0.00000000641   1132-1191   TSP-1 type 1 repeat  
  0.00000000916   379-439   TSP-1 type 1 repeat  
  0.0000000209   1021-1084   TSP-1 type 1 repeat  
  0.0000000392   1082-1133   TSP-1 type 1 repeat  
  0.0000262   975-1026   TSP-1 type 1 repeat  
  0.0000824   436-502   TSP-1 type 1 repeat  
ENSNLEP00000001126   0.0000000000000157   251-301   TSP-1 type 1 repeat  
  0.00000000034   568-630   TSP-1 type 1 repeat  
  0.000000000615   681-737   TSP-1 type 1 repeat  
  0.0000000183   633-676   TSP-1 type 1 repeat  
  0.0000000458   511-570   TSP-1 type 1 repeat  
ENSNLEP00000001226   0.00000000379   276-324   TSP-1 type 1 repeat  
ENSNLEP00000001496   1.7e-16   493-544   TSP-1 type 1 repeat  
  0.0000000000000106   436-491   TSP-1 type 1 repeat  
  0.00000000034   382-430   TSP-1 type 1 repeat  
ENSNLEP00000001535   0.0000000102   74-121   TSP-1 type 1 repeat  
ENSNLEP00000001729   0.00000000000000837   508-563   TSP-1 type 1 repeat  
  0.0000000144   923-976   TSP-1 type 1 repeat  
  0.0301   878-923   TSP-1 type 1 repeat  
ENSNLEP00000002011   0.0000000000000405   405-461   TSP-1 type 1 repeat  
  0.000000000000746   466-516   TSP-1 type 1 repeat  
  0.00000000000392   519-574   TSP-1 type 1 repeat  
  0.0000000000327   353-402   TSP-1 type 1 repeat  
  0.000000000112   261-310   TSP-1 type 1 repeat  
ENSNLEP00000002020   0.000000000523   45-96   TSP-1 type 1 repeat  
ENSNLEP00000002429   0.000000000000196   471-526   TSP-1 type 1 repeat  
  0.00000000288   813-869   TSP-1 type 1 repeat  
  0.0000000144   750-809   TSP-1 type 1 repeat  
  0.0000000432   868-927   TSP-1 type 1 repeat  
  0.0017   927-979   TSP-1 type 1 repeat  
ENSNLEP00000002502   0.0000000000000693   362-417   TSP-1 type 1 repeat  
  0.00000000000131   311-357   TSP-1 type 1 repeat  
  0.00000000034   417-472   TSP-1 type 1 repeat  
  0.000000000693   476-523   TSP-1 type 1 repeat  
ENSNLEP00000002545   2.62e-17   551-608   TSP-1 type 1 repeat  
  4.05e-16   497-546   TSP-1 type 1 repeat  
  0.000000000144   441-490   TSP-1 type 1 repeat  
ENSNLEP00000003406   0.00000000000000109   557-613   TSP-1 type 1 repeat  
  0.000000000876   905-966   TSP-1 type 1 repeat  
  0.0000000068   856-909   TSP-1 type 1 repeat  
ENSNLEP00000003443   0.0000000000000811   567-621   TSP-1 type 1 repeat  
  0.00000017   877-932   TSP-1 type 1 repeat  
ENSNLEP00000003559   0.00000000000222   277-335   TSP-1 type 1 repeat  
  0.000000000017   341-399   TSP-1 type 1 repeat  
  0.000000000249   461-513   TSP-1 type 1 repeat  
  0.00000000379   398-455   TSP-1 type 1 repeat  
  0.0000000824   26-58   TSP-1 type 1 repeat  
ENSNLEP00000004138   0.00000000000445   257-308   TSP-1 type 1 repeat  
  0.00000000000876   137-186   TSP-1 type 1 repeat  
  0.000000000837   189-249   TSP-1 type 1 repeat  
  0.00000000916   77-132   TSP-1 type 1 repeat  
  0.0000000497   311-371   TSP-1 type 1 repeat  
  0.00000602   376-415   TSP-1 type 1 repeat  
ENSNLEP00000004161   0.000000000000314   556-612   TSP-1 type 1 repeat  
  0.000000000111   842-899   TSP-1 type 1 repeat  
  0.000000000667   903-959   TSP-1 type 1 repeat  
  0.0000000196   1017-1068   TSP-1 type 1 repeat  
  0.00000157   962-1017   TSP-1 type 1 repeat  
ENSNLEP00000004973   0.00000405   144-196   TSP-1 type 1 repeat  
ENSNLEP00000005952   0.0000314   206-249   TSP-1 type 1 repeat  
ENSNLEP00000007661   0.0000000000144   143-196   TSP-1 type 1 repeat  
ENSNLEP00000008073   0.0000536   192-237   TSP-1 type 1 repeat  
ENSNLEP00000009121   4.58e-16   159-215   TSP-1 type 1 repeat  
  0.0000000000471   469-522   TSP-1 type 1 repeat  
ENSNLEP00000009122   0.0000000000000209   514-570   TSP-1 type 1 repeat  
  0.000000000863   890-950   TSP-1 type 1 repeat  
  0.00000000968   839-891   TSP-1 type 1 repeat  
ENSNLEP00000009416   0.00000000000000484   550-605   TSP-1 type 1 repeat  
  0.000000000419   969-1015   TSP-1 type 1 repeat  
  0.00000000183   908-966   TSP-1 type 1 repeat  
  0.00000000641   846-904   TSP-1 type 1 repeat  
ENSNLEP00000009432   0.0000000000183   285-343   TSP-1 type 1 repeat  
  0.00000000314   55-121   TSP-1 type 1 repeat  
  0.0000000068   176-230   TSP-1 type 1 repeat  
  0.0000000523   230-290   TSP-1 type 1 repeat  
  0.00000301   3-58   TSP-1 type 1 repeat  
  0.0000262   123-173   TSP-1 type 1 repeat  
ENSNLEP00000010842   0.000000000144   179-226   TSP-1 type 1 repeat  
  0.000000000471   1248-1298   TSP-1 type 1 repeat  
  0.000000000876   597-660   TSP-1 type 1 repeat  
  0.00000000327   1000-1043   TSP-1 type 1 repeat  
  0.000000011   336-389   TSP-1 type 1 repeat  
  0.000000327   664-732   TSP-1 type 1 repeat  
  0.00000051   737-789   TSP-1 type 1 repeat  
  0.000000602   1054-1124   TSP-1 type 1 repeat  
  0.000000602   1368-1432   TSP-1 type 1 repeat  
  0.0000051   1129-1177   TSP-1 type 1 repeat  
  0.0000183   1301-1355   TSP-1 type 1 repeat  
  0.0000654   921-995   TSP-1 type 1 repeat  
  0.0000654   1181-1230   TSP-1 type 1 repeat  
  0.000353   42-94   TSP-1 type 1 repeat  
  0.000353   102-174   TSP-1 type 1 repeat  
  0.000589   795-865   TSP-1 type 1 repeat  
  0.00144   867-921   TSP-1 type 1 repeat  
  0.00183   397-479   TSP-1 type 1 repeat  
  0.00301   480-542   TSP-1 type 1 repeat  
ENSNLEP00000012079   0.00000000126   981-1032   TSP-1 type 1 repeat  
  0.00000000327   919-977   TSP-1 type 1 repeat  
  0.00000000445   44-78   TSP-1 type 1 repeat  
  0.0000000124   790-848   TSP-1 type 1 repeat  
  0.0000000131   732-790   TSP-1 type 1 repeat  
  0.000000497   852-915   TSP-1 type 1 repeat  
  0.000458   675-730   TSP-1 type 1 repeat  
ENSNLEP00000012236   0.00000379   135-180   TSP-1 type 1 repeat  
ENSNLEP00000013104   0.000000000017   706-759   TSP-1 type 1 repeat  
  0.000000000589   419-479   TSP-1 type 1 repeat  
  0.0000000017   571-625   TSP-1 type 1 repeat  
  0.00000000183   474-534   TSP-1 type 1 repeat  
  0.00000000654   1425-1482   TSP-1 type 1 repeat  
  0.0000000209   75-123   TSP-1 type 1 repeat  
  0.0000000484   760-819   TSP-1 type 1 repeat  
  0.000000222   815-880   TSP-1 type 1 repeat  
  0.000000523   1486-1543   TSP-1 type 1 repeat  
  0.00000068   1599-1654   TSP-1 type 1 repeat  
  0.0000034   341-401   TSP-1 type 1 repeat  
  0.00000562   647-703   TSP-1 type 1 repeat  
ENSNLEP00000013716   7.06e-16   583-640   TSP-1 type 1 repeat  
  0.000000000119   1128-1177   TSP-1 type 1 repeat  
  0.00000000209   921-986   TSP-1 type 1 repeat  
  0.00000000314   989-1047   TSP-1 type 1 repeat  
  0.000000353   1054-1114   TSP-1 type 1 repeat  
  0.0471   879-927   TSP-1 type 1 repeat  
ENSNLEP00000014079   1.57e-16   837-895   TSP-1 type 1 repeat  
  0.00000000000000235   783-834   TSP-1 type 1 repeat  
  0.00000000000000471   595-645   TSP-1 type 1 repeat  
  0.000000000772   650-701   TSP-1 type 1 repeat  
  0.0000000693   896-941   TSP-1 type 1 repeat  
  0.000000785   539-592   TSP-1 type 1 repeat  
ENSNLEP00000014465   0.0000000000000706   586-642   TSP-1 type 1 repeat  
  0.0000000000628   1107-1165   TSP-1 type 1 repeat  
  0.0000000000824   1380-1439   TSP-1 type 1 repeat  
  0.000000000131   1183-1239   TSP-1 type 1 repeat  
  0.00000000105   993-1053   TSP-1 type 1 repeat  
  0.00000000144   1052-1108   TSP-1 type 1 repeat  
  0.00000000275   1237-1295   TSP-1 type 1 repeat  
  0.00000000366   1553-1612   TSP-1 type 1 repeat  
  0.00000000785   1444-1498   TSP-1 type 1 repeat  
  0.00000000929   1327-1383   TSP-1 type 1 repeat  
  0.0000000196   1615-1675   TSP-1 type 1 repeat  
  0.0000000249   1680-1728   TSP-1 type 1 repeat  
  0.000000288   1496-1554   TSP-1 type 1 repeat  
  0.0000916   877-932   TSP-1 type 1 repeat  
  0.0109   938-993   TSP-1 type 1 repeat  
ENSNLEP00000014726   0.0000000000000562   251-301   TSP-1 type 1 repeat  
  0.000000000876   307-354   TSP-1 type 1 repeat  
ENSNLEP00000015081   0.0000000000017   941-997   TSP-1 type 1 repeat  
  0.00000000575   834-890   TSP-1 type 1 repeat  
  0.000000017   769-830   TSP-1 type 1 repeat  
  0.0000000353   489-539   TSP-1 type 1 repeat  
  0.0000000523   892-936   TSP-1 type 1 repeat  
ENSNLEP00000015259   0.00000000102   233-287   TSP-1 type 1 repeat  
ENSNLEP00000015341   0.00000000051   149-200   TSP-1 type 1 repeat  
ENSNLEP00000015740   0.0000118   226-270   TSP-1 type 1 repeat  
ENSNLEP00000015993   0.0000000183   1064-1128   TSP-1 type 1 repeat  
  0.0000000314   736-803   TSP-1 type 1 repeat  
  0.00000275   1016-1070   TSP-1 type 1 repeat  
  0.0000144   946-1010   TSP-1 type 1 repeat  
  0.00144   682-741   TSP-1 type 1 repeat  
  0.0116   384-437   TSP-1 type 1 repeat  
  0.0419   900-949   TSP-1 type 1 repeat  
ENSNLEP00000016075   2.88e-16   586-643   TSP-1 type 1 repeat  
  0.000000000103   1124-1177   TSP-1 type 1 repeat  
  0.00000000249   994-1048   TSP-1 type 1 repeat  
  0.00000000484   930-991   TSP-1 type 1 repeat  
  0.0000000798   1054-1115   TSP-1 type 1 repeat  
  0.000301   883-931   TSP-1 type 1 repeat  
ENSNLEP00000016122   0.00000379   49-93   TSP-1 type 1 repeat  
ENSNLEP00000016710   0.0000000262   53-95   TSP-1 type 1 repeat  
ENSNLEP00000016744   0.0000000000523   495-552   TSP-1 type 1 repeat  
  0.000000000144   319-376   TSP-1 type 1 repeat  
  0.000000000157   377-433   TSP-1 type 1 repeat  
  0.000000000746   556-607   TSP-1 type 1 repeat  
  0.00000106   437-490   TSP-1 type 1 repeat  
  0.0000034   266-316   TSP-1 type 1 repeat  
ENSNLEP00000017135   0.0000000000000392   259-310   TSP-1 type 1 repeat  
  0.00000000209   313-367   TSP-1 type 1 repeat  
ENSNLEP00000017155   0.000000034   146-201   TSP-1 type 1 repeat  
ENSNLEP00000017166   0.00000000000000484   518-574   TSP-1 type 1 repeat  
ENSNLEP00000017358   0.00000000000000262   541-596   TSP-1 type 1 repeat  
  0.0000000017   1479-1538   TSP-1 type 1 repeat  
  0.00000000549   944-996   TSP-1 type 1 repeat  
  0.0000000628   824-882   TSP-1 type 1 repeat  
  0.000000128   1426-1479   TSP-1 type 1 repeat  
  0.000000392   1367-1431   TSP-1 type 1 repeat  
  0.000000484   1322-1372   TSP-1 type 1 repeat  
  0.00000124   881-940   TSP-1 type 1 repeat  
ENSNLEP00000017673   0.00000068   221-261   TSP-1 type 1 repeat  
ENSNLEP00000017678   0.00000275   198-242   TSP-1 type 1 repeat  
ENSNLEP00000017897   0.000000000275   539-584   TSP-1 type 1 repeat  
  0.0000131   37-84   TSP-1 type 1 repeat  
ENSNLEP00000017921   0.0000000000222   544-590   TSP-1 type 1 repeat  
  0.00000366   63-112   TSP-1 type 1 repeat  
ENSNLEP00000019600   0.00000000000000798   555-605   TSP-1 type 1 repeat  
  0.000000000824   974-1024   TSP-1 type 1 repeat  
  0.0000000562   913-971   TSP-1 type 1 repeat  
  0.000000249   851-909   TSP-1 type 1 repeat  
ENSNLEP00000019659   0.00000000000288   132-179   TSP-1 type 1 repeat  
  0.00000000000798   1221-1278   TSP-1 type 1 repeat  
  0.0000000000353   568-632   TSP-1 type 1 repeat  
  0.00000000157   969-1028   TSP-1 type 1 repeat  
  0.00000000523   298-351   TSP-1 type 1 repeat  
  0.000000131   709-762   TSP-1 type 1 repeat  
  0.000000183   1352-1407   TSP-1 type 1 repeat  
  0.000000235   635-704   TSP-1 type 1 repeat  
  0.0000109   1027-1097   TSP-1 type 1 repeat  
  0.0000118   1276-1326   TSP-1 type 1 repeat  
  0.0000157   1103-1153   TSP-1 type 1 repeat  
  0.0000262   358-432   TSP-1 type 1 repeat  
  0.0000602   840-895   TSP-1 type 1 repeat  
  0.000405   1156-1212   TSP-1 type 1 repeat  
  0.00222   446-511   TSP-1 type 1 repeat  
  0.0296   905-968   TSP-1 type 1 repeat  
ENSNLEP00000019756   0.000000000000017   221-272   TSP-1 type 1 repeat  
  0.000000000183   274-329   TSP-1 type 1 repeat  
ENSNLEP00000020055   0.00000000249   498-544   TSP-1 type 1 repeat  
  0.000000196   26-73   TSP-1 type 1 repeat  
ENSNLEP00000020197   0.00000000129   564-612   TSP-1 type 1 repeat  
  0.00000000811   24-78   TSP-1 type 1 repeat  
  0.000000575   80-128   TSP-1 type 1 repeat  
ENSNLEP00000020330   0.00000183   248-284   TSP-1 type 1 repeat  
ENSNLEP00000021315   0.000000000157   669-728   TSP-1 type 1 repeat  
  0.000000000458   1540-1607   TSP-1 type 1 repeat  
  0.000000000968   783-849   TSP-1 type 1 repeat  
  0.00000000157   432-492   TSP-1 type 1 repeat  
  0.00000000693   32-81   TSP-1 type 1 repeat  
  0.0000000144   376-437   TSP-1 type 1 repeat  
  0.0000000209   729-788   TSP-1 type 1 repeat  
  0.0000000262   529-583   TSP-1 type 1 repeat  
  0.000000209   1669-1725   TSP-1 type 1 repeat  
  0.000000249   296-359   TSP-1 type 1 repeat  
  0.000000484   610-666   TSP-1 type 1 repeat  
  0.000118   1607-1666   TSP-1 type 1 repeat  
  0.000157   1486-1545   TSP-1 type 1 repeat  
ENSNLEP00000021479   0.00000000000366   610-665   TSP-1 type 1 repeat  
  0.00000000000628   554-610   TSP-1 type 1 repeat  
  0.0000000000301   665-720   TSP-1 type 1 repeat  
  0.00000000106   501-551   TSP-1 type 1 repeat  
  0.0000000144   754-807   TSP-1 type 1 repeat  
  0.000000732   443-489   TSP-1 type 1 repeat  
ENSNLEP00000021788   0.000000000000693   555-612   TSP-1 type 1 repeat  
  0.0000000000157   1206-1265   TSP-1 type 1 repeat  
  0.0000000000405   1360-1417   TSP-1 type 1 repeat  
  0.000000000314   1076-1136   TSP-1 type 1 repeat  
  0.00000000183   963-1024   TSP-1 type 1 repeat  
  0.00000000405   1020-1079   TSP-1 type 1 repeat  
  0.00000000785   1305-1361   TSP-1 type 1 repeat  
  0.00000000837   1157-1208   TSP-1 type 1 repeat  
  0.00000000968   1657-1711   TSP-1 type 1 repeat  
  0.0000000654   1422-1476   TSP-1 type 1 repeat  
  0.0000000994   1471-1532   TSP-1 type 1 repeat  
  0.00000353   851-904   TSP-1 type 1 repeat  
  0.00575   915-964   TSP-1 type 1 repeat  
  0.0183   1598-1640   TSP-1 type 1 repeat  
ENSNLEP00000021907   2.88e-16   220-278   TSP-1 type 1 repeat  
  0.00000000000000118   277-335   TSP-1 type 1 repeat  
  0.00000000000000183   165-221   TSP-1 type 1 repeat  
  0.00000000000000419   449-506   TSP-1 type 1 repeat  
  0.0000000000000116   335-392   TSP-1 type 1 repeat  
  0.0000000000000262   391-449   TSP-1 type 1 repeat  
 
Weak hits:
ENSNLEP00000011444   0.000929   138-190   TSP-1 type 1 repeat  
ENSNLEP00000012282   0.0575   205-253   TSP-1 type 1 repeat  
ENSNLEP00000013448   0.00288   141-179   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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