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TSP-1 type 1 repeat superfamily domain assignments
in
Sus scrofa 69_10.2

Assignment details

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Sus scrofa 69_10.2 has 213 significant domains in 64 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000000844   0.00000000000288   1085-1144   TSP-1 type 1 repeat  
  0.00000000051   899-958   TSP-1 type 1 repeat  
  0.000000000589   957-1015   TSP-1 type 1 repeat  
  0.000000000902   1239-1296   TSP-1 type 1 repeat  
  0.00000000275   1300-1355   TSP-1 type 1 repeat  
  0.00000000445   1185-1240   TSP-1 type 1 repeat  
  0.0000000068   1035-1086   TSP-1 type 1 repeat  
  0.0000000405   1536-1591   TSP-1 type 1 repeat  
  0.0000000876   840-903   TSP-1 type 1 repeat  
  0.00000085   1406-1469   TSP-1 type 1 repeat  
  0.00000275   1352-1411   TSP-1 type 1 repeat  
  0.00785   786-842   TSP-1 type 1 repeat  
  0.034   1470-1518   TSP-1 type 1 repeat  
ENSSSCP00000001925   0.000000000000034   101-157   TSP-1 type 1 repeat  
  0.000000000706   509-559   TSP-1 type 1 repeat  
  0.00000000196   1111-1170   TSP-1 type 1 repeat  
  0.00000000759   1000-1063   TSP-1 type 1 repeat  
  0.0000000327   387-444   TSP-1 type 1 repeat  
  0.0000000379   1061-1112   TSP-1 type 1 repeat  
  0.000000994   955-1005   TSP-1 type 1 repeat  
  0.0000209   442-507   TSP-1 type 1 repeat  
ENSSSCP00000001960   0.0000000000929   466-519   TSP-1 type 1 repeat  
  0.000000000405   327-382   TSP-1 type 1 repeat  
  0.000000000497   176-236   TSP-1 type 1 repeat  
  0.00000000131   1186-1244   TSP-1 type 1 repeat  
  0.0000000017   231-291   TSP-1 type 1 repeat  
  0.000000017   1248-1305   TSP-1 type 1 repeat  
  0.0000000275   520-579   TSP-1 type 1 repeat  
  0.000000209   575-640   TSP-1 type 1 repeat  
  0.00000288   98-158   TSP-1 type 1 repeat  
  0.00000772   408-463   TSP-1 type 1 repeat  
  0.00000916   1364-1419   TSP-1 type 1 repeat  
ENSSSCP00000001961   0.00000000288   31-79   TSP-1 type 1 repeat  
ENSSSCP00000002540   0.00000000000157   301-359   TSP-1 type 1 repeat  
  0.0000000000445   364-423   TSP-1 type 1 repeat  
  0.00000000131   422-479   TSP-1 type 1 repeat  
  0.00000000706   27-80   TSP-1 type 1 repeat  
  0.0000000366   484-535   TSP-1 type 1 repeat  
ENSSSCP00000002607   0.000000183   254-294   TSP-1 type 1 repeat  
ENSSSCP00000003908   0.0000000000000523   84-139   TSP-1 type 1 repeat  
  0.00000000000109   33-79   TSP-1 type 1 repeat  
  0.000000000157   198-245   TSP-1 type 1 repeat  
  0.000000000366   139-194   TSP-1 type 1 repeat  
ENSSSCP00000004150   0.00000772   75-123   TSP-1 type 1 repeat  
  0.0379   555-569   TSP-1 type 1 repeat  
ENSSSCP00000004152   0.000000000068   519-564   TSP-1 type 1 repeat  
  0.0000129   15-63   TSP-1 type 1 repeat  
ENSSSCP00000004335   2.88e-16   497-548   TSP-1 type 1 repeat  
  0.0000000000000222   440-495   TSP-1 type 1 repeat  
  0.000000000575   387-429   TSP-1 type 1 repeat  
ENSSSCP00000004525   0.00000128   197-242   TSP-1 type 1 repeat  
ENSSSCP00000004554   0.00000000641   146-201   TSP-1 type 1 repeat  
ENSSSCP00000004611   0.0000000000000405   90-145   TSP-1 type 1 repeat  
  0.000000000000249   145-200   TSP-1 type 1 repeat  
  0.00000000000667   42-85   TSP-1 type 1 repeat  
  0.000000000746   200-255   TSP-1 type 1 repeat  
ENSSSCP00000004772   0.0000196   180-224   TSP-1 type 1 repeat  
ENSSSCP00000005158   2.09e-17   491-543   TSP-1 type 1 repeat  
  6.02e-16   435-485   TSP-1 type 1 repeat  
  0.0000000000327   379-428   TSP-1 type 1 repeat  
ENSSSCP00000005303   0.00000000127   161-210   TSP-1 type 1 repeat  
ENSSSCP00000005355   0.0000000000288   411-468   TSP-1 type 1 repeat  
  0.000000000124   235-292   TSP-1 type 1 repeat  
  0.000000000131   293-349   TSP-1 type 1 repeat  
  0.000000000523   472-523   TSP-1 type 1 repeat  
  0.000000889   353-406   TSP-1 type 1 repeat  
  0.00000111   182-232   TSP-1 type 1 repeat  
ENSSSCP00000006356   0.00000209   181-227   TSP-1 type 1 repeat  
ENSSSCP00000006411   0.0000235   207-250   TSP-1 type 1 repeat  
ENSSSCP00000006447   0.00000262   129-181   TSP-1 type 1 repeat  
ENSSSCP00000006594   0.0000000196   3-50   TSP-1 type 1 repeat  
ENSSSCP00000006778   0.00000000000000811   518-574   TSP-1 type 1 repeat  
ENSSSCP00000007092   0.00000000235   44-78   TSP-1 type 1 repeat  
  0.00000000405   772-830   TSP-1 type 1 repeat  
  0.00000000484   961-1015   TSP-1 type 1 repeat  
  0.00000000942   714-772   TSP-1 type 1 repeat  
  0.0000000432   902-960   TSP-1 type 1 repeat  
  0.00000157   834-898   TSP-1 type 1 repeat  
  0.000103   657-712   TSP-1 type 1 repeat  
ENSSSCP00000007401   0.00000327   228-273   TSP-1 type 1 repeat  
ENSSSCP00000007535   0.00000068   221-261   TSP-1 type 1 repeat  
ENSSSCP00000007862   0.0000262   187-231   TSP-1 type 1 repeat  
ENSSSCP00000009546   0.000000000157   106-152   TSP-1 type 1 repeat  
  0.000000000641   44-103   TSP-1 type 1 repeat  
ENSSSCP00000009547   0.00000000497   245-276   TSP-1 type 1 repeat  
ENSSSCP00000010006   0.000000000916   343-393   TSP-1 type 1 repeat  
ENSSSCP00000010951   0.000000000000017   554-604   TSP-1 type 1 repeat  
  0.00000000301   912-970   TSP-1 type 1 repeat  
  0.000000262   973-1024   TSP-1 type 1 repeat  
  0.000000772   850-908   TSP-1 type 1 repeat  
ENSSSCP00000010956   0.0000000000000183   245-296   TSP-1 type 1 repeat  
  0.000000000183   298-353   TSP-1 type 1 repeat  
ENSSSCP00000012250   0.000000000000209   586-642   TSP-1 type 1 repeat  
  0.0000000000144   1380-1439   TSP-1 type 1 repeat  
  0.0000000000602   1107-1165   TSP-1 type 1 repeat  
  0.0000000000746   1183-1239   TSP-1 type 1 repeat  
  0.00000000068   1553-1613   TSP-1 type 1 repeat  
  0.00000000275   1616-1676   TSP-1 type 1 repeat  
  0.00000000327   1234-1295   TSP-1 type 1 repeat  
  0.00000000445   995-1053   TSP-1 type 1 repeat  
  0.0000000068   1682-1729   TSP-1 type 1 repeat  
  0.00000000706   1443-1498   TSP-1 type 1 repeat  
  0.00000000889   1049-1108   TSP-1 type 1 repeat  
  0.00000000929   1327-1383   TSP-1 type 1 repeat  
  0.0000000837   1496-1554   TSP-1 type 1 repeat  
  0.0000575   877-933   TSP-1 type 1 repeat  
  0.00301   938-993   TSP-1 type 1 repeat  
ENSSSCP00000012644   0.00000000000000327   699-751   TSP-1 type 1 repeat  
  0.00000000000000798   511-561   TSP-1 type 1 repeat  
  0.000000000000157   754-811   TSP-1 type 1 repeat  
  0.000000000123   565-617   TSP-1 type 1 repeat  
  0.00000562   814-857   TSP-1 type 1 repeat  
  0.000209   456-508   TSP-1 type 1 repeat  
ENSSSCP00000012808   3.66e-16   535-591   TSP-1 type 1 repeat  
  0.000000000275   833-887   TSP-1 type 1 repeat  
  0.000000000301   883-944   TSP-1 type 1 repeat  
ENSSSCP00000012809   0.00000000000017   566-620   TSP-1 type 1 repeat  
  0.000000102   870-923   TSP-1 type 1 repeat  
ENSSSCP00000013067   0.0000000000288   255-306   TSP-1 type 1 repeat  
  0.0000000000484   133-182   TSP-1 type 1 repeat  
  0.0000000183   185-246   TSP-1 type 1 repeat  
  0.0000000301   75-113   TSP-1 type 1 repeat  
  0.000000116   309-369   TSP-1 type 1 repeat  
  0.0000275   380-413   TSP-1 type 1 repeat  
ENSSSCP00000014235   0.000000000000732   90-145   TSP-1 type 1 repeat  
  0.00000000000144   34-90   TSP-1 type 1 repeat  
  0.00000000000235   147-195   TSP-1 type 1 repeat  
  0.00000000327   234-287   TSP-1 type 1 repeat  
ENSSSCP00000014282   0.0000000000536   42-93   TSP-1 type 1 repeat  
ENSSSCP00000014814   0.0000000000222   143-196   TSP-1 type 1 repeat  
ENSSSCP00000014938   0.00000000000000876   242-292   TSP-1 type 1 repeat  
  0.000000000654   296-350   TSP-1 type 1 repeat  
ENSSSCP00000015169   0.00000000432   31-62   TSP-1 type 1 repeat  
ENSSSCP00000016173   0.0000000000000011   654-710   TSP-1 type 1 repeat  
  0.000000000051   966-1019   TSP-1 type 1 repeat  
ENSSSCP00000016174   0.0000000000000523   520-576   TSP-1 type 1 repeat  
  0.000000000471   895-956   TSP-1 type 1 repeat  
  0.000000000536   843-897   TSP-1 type 1 repeat  
ENSSSCP00000016278   0.00000000000183   130-177   TSP-1 type 1 repeat  
  0.00000000000275   1219-1276   TSP-1 type 1 repeat  
  0.0000000000183   566-630   TSP-1 type 1 repeat  
  0.00000000222   967-1026   TSP-1 type 1 repeat  
  0.00000000824   296-349   TSP-1 type 1 repeat  
  0.0000000249   707-760   TSP-1 type 1 repeat  
  0.0000000902   1350-1405   TSP-1 type 1 repeat  
  0.000000262   633-702   TSP-1 type 1 repeat  
  0.000000955   1097-1152   TSP-1 type 1 repeat  
  0.00000353   1271-1326   TSP-1 type 1 repeat  
  0.000034   1025-1096   TSP-1 type 1 repeat  
  0.0000562   838-893   TSP-1 type 1 repeat  
  0.000103   357-431   TSP-1 type 1 repeat  
  0.000432   1154-1210   TSP-1 type 1 repeat  
  0.00301   444-509   TSP-1 type 1 repeat  
  0.0253   899-966   TSP-1 type 1 repeat  
ENSSSCP00000016776   0.0000000000000288   59-112   TSP-1 type 1 repeat  
  0.00000000105   118-165   TSP-1 type 1 repeat  
ENSSSCP00000017814   0.0000000000000262   330-385   TSP-1 type 1 repeat  
  0.000000000432   1281-1339   TSP-1 type 1 repeat  
  0.0000000122   749-801   TSP-1 type 1 repeat  
  0.0000000706   1169-1233   TSP-1 type 1 repeat  
  0.0000000863   1228-1281   TSP-1 type 1 repeat  
  0.000000157   1123-1174   TSP-1 type 1 repeat  
  0.000000222   682-745   TSP-1 type 1 repeat  
ENSSSCP00000017860   0.00000419   14-62   TSP-1 type 1 repeat  
ENSSSCP00000017865   0.000000000471   499-545   TSP-1 type 1 repeat  
  0.000000275   26-73   TSP-1 type 1 repeat  
ENSSSCP00000017868   0.000000000968   564-612   TSP-1 type 1 repeat  
  0.00000000837   24-78   TSP-1 type 1 repeat  
  0.000000222   80-128   TSP-1 type 1 repeat  
ENSSSCP00000017951   0.000000000000222   402-458   TSP-1 type 1 repeat  
  0.000000000131   688-745   TSP-1 type 1 repeat  
  0.000000000732   749-805   TSP-1 type 1 repeat  
  0.0000000144   863-914   TSP-1 type 1 repeat  
  0.00000288   808-863   TSP-1 type 1 repeat  
ENSSSCP00000018112   1.83e-17   840-898   TSP-1 type 1 repeat  
  9.94e-17   599-656   TSP-1 type 1 repeat  
  0.00000000000000209   785-841   TSP-1 type 1 repeat  
  0.0000000392   899-944   TSP-1 type 1 repeat  
  0.000000122   655-704   TSP-1 type 1 repeat  
ENSSSCP00000018126   8.37e-16   587-644   TSP-1 type 1 repeat  
  0.0000000000144   1133-1184   TSP-1 type 1 repeat  
  0.000000000837   925-990   TSP-1 type 1 repeat  
  0.00000000445   993-1051   TSP-1 type 1 repeat  
  0.000000327   1057-1118   TSP-1 type 1 repeat  
  0.0068   881-931   TSP-1 type 1 repeat  
ENSSSCP00000021031   0.00000000000196   2-51   TSP-1 type 1 repeat  
ENSSSCP00000021077   0.00000000000000209   379-434   TSP-1 type 1 repeat  
  0.0000000128   794-847   TSP-1 type 1 repeat  
  0.0000000366   727-794   TSP-1 type 1 repeat  
  0.000000196   675-732   TSP-1 type 1 repeat  
ENSSSCP00000021587   0.0000000000654   856-914   TSP-1 type 1 repeat  
  0.00000000759   626-692   TSP-1 type 1 repeat  
  0.0000000116   747-801   TSP-1 type 1 repeat  
  0.0000000301   48-105   TSP-1 type 1 repeat  
  0.000000392   801-861   TSP-1 type 1 repeat  
  0.00000144   569-629   TSP-1 type 1 repeat  
  0.0000759   694-744   TSP-1 type 1 repeat  
ENSSSCP00000022049   0.0000000000458   84-132   TSP-1 type 1 repeat  
  0.00000000112   11-79   TSP-1 type 1 repeat  
ENSSSCP00000022091   1.83e-16   167-223   TSP-1 type 1 repeat  
  0.000000000144   465-519   TSP-1 type 1 repeat  
  0.000000000157   515-576   TSP-1 type 1 repeat  
ENSSSCP00000022151   0.000000000000183   4-58   TSP-1 type 1 repeat  
  0.0000000000955   117-164   TSP-1 type 1 repeat  
  0.000000000235   58-113   TSP-1 type 1 repeat  
ENSSSCP00000022222   0.000000000000209   546-601   TSP-1 type 1 repeat  
  0.00000000196   888-944   TSP-1 type 1 repeat  
  0.0000000262   825-884   TSP-1 type 1 repeat  
  0.0000000523   939-1002   TSP-1 type 1 repeat  
  0.000000419   1002-1054   TSP-1 type 1 repeat  
ENSSSCP00000022250   0.0000000000275   72-133   TSP-1 type 1 repeat  
  0.0000811   4-47   TSP-1 type 1 repeat  
  0.00249   133-165   TSP-1 type 1 repeat  
ENSSSCP00000024720   0.00000000000000732   364-419   TSP-1 type 1 repeat  
  0.0000000144   723-785   TSP-1 type 1 repeat  
  0.0000000157   1052-1107   TSP-1 type 1 repeat  
  0.000000157   993-1049   TSP-1 type 1 repeat  
  0.00327   879-929   TSP-1 type 1 repeat  
  0.00445   931-989   TSP-1 type 1 repeat  
  0.0549   666-724   TSP-1 type 1 repeat  
ENSSSCP00000026630   0.00000000942   65-113   TSP-1 type 1 repeat  
ENSSSCP00000027542   0.00000106   43-102   TSP-1 type 1 repeat  
ENSSSCP00000029588   0.0000000000288   255-306   TSP-1 type 1 repeat  
  0.0000000000484   135-184   TSP-1 type 1 repeat  
  0.00000000157   74-130   TSP-1 type 1 repeat  
  0.00000000549   187-247   TSP-1 type 1 repeat  
  0.000000116   309-369   TSP-1 type 1 repeat  
  0.0000275   380-413   TSP-1 type 1 repeat  
 
Weak hits:
ENSSSCP00000007080   0.0392   204-252   TSP-1 type 1 repeat  
ENSSSCP00000007665   0.000484   106-158   TSP-1 type 1 repeat  
ENSSSCP00000018376   0.0876   172-204   TSP-1 type 1 repeat  
ENSSSCP00000020854   0.000667   138-180   TSP-1 type 1 repeat  
ENSSSCP00000027021   0.00196   142-179   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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