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  Home > Genomes > Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
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Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Assignment details

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Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) has 283 significant domains in 84 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|112418592|gb|AAI22079|   0.00000000719   259-307   TSP-1 type 1 repeat  
gi|118404864|ref|NP_001072560|   0.00000000719   259-307   TSP-1 type 1 repeat  
gi|120537344|gb|AAI29017|   0.0000000000017   606-661   TSP-1 type 1 repeat  
  0.00000000000589   550-606   TSP-1 type 1 repeat  
  0.0000000000536   664-711   TSP-1 type 1 repeat  
  0.000000000288   497-547   TSP-1 type 1 repeat  
  0.0000000759   751-803   TSP-1 type 1 repeat  
  0.000000419   439-485   TSP-1 type 1 repeat  
gi|134025624|gb|AAI36027|   0.0000000000000209   248-299   TSP-1 type 1 repeat  
  0.000000011   302-356   TSP-1 type 1 repeat  
gi|148229078|ref|NP_001090741|   0.0000000000017   606-661   TSP-1 type 1 repeat  
  0.00000000000589   550-606   TSP-1 type 1 repeat  
  0.0000000000536   664-711   TSP-1 type 1 repeat  
  0.000000000288   497-547   TSP-1 type 1 repeat  
  0.0000000759   751-803   TSP-1 type 1 repeat  
  0.000000419   439-485   TSP-1 type 1 repeat  
gi|157502189|ref|NP_001098984|   0.00000366   223-267   TSP-1 type 1 repeat  
gi|163916230|gb|AAI57688|   0.000000000000017   65-122   TSP-1 type 1 repeat  
  0.0000000000000196   8-65   TSP-1 type 1 repeat  
gi|166796971|gb|AAI59018|   0.000000471   45-93   TSP-1 type 1 repeat  
  0.00183   550-596   TSP-1 type 1 repeat  
gi|166796994|gb|AAI59080|   0.000000471   45-93   TSP-1 type 1 repeat  
  0.00183   550-596   TSP-1 type 1 repeat  
gi|171846359|gb|AAI61601|   0.000000183   122-164   TSP-1 type 1 repeat  
gi|172355687|ref|NP_001116489|   0.000000183   122-164   TSP-1 type 1 repeat  
gi|183986221|gb|AAI66354|   4.58e-16   506-562   TSP-1 type 1 repeat  
  0.000000000301   814-869   TSP-1 type 1 repeat  
  0.000000000641   865-926   TSP-1 type 1 repeat  
gi|183986485|gb|AAI66324|   0.000000523   144-197   TSP-1 type 1 repeat  
gi|188528959|ref|NP_001120905|   4.58e-16   506-562   TSP-1 type 1 repeat  
  0.000000000301   814-869   TSP-1 type 1 repeat  
  0.000000000641   865-926   TSP-1 type 1 repeat  
gi|189230352|ref|NP_001121500|   0.000000523   144-197   TSP-1 type 1 repeat  
gi|301603811|gb|XP_002931559|   1.83e-17   499-557   TSP-1 type 1 repeat  
  0.0000000000000085   445-500   TSP-1 type 1 repeat  
  0.0000000000536   391-439   TSP-1 type 1 repeat  
gi|301603975|gb|XP_002931633|   0.000000000523   526-572   TSP-1 type 1 repeat  
  0.00000667   45-93   TSP-1 type 1 repeat  
gi|301604216|gb|XP_002931770|   0.0000000000183   1278-1334   TSP-1 type 1 repeat  
  0.00000000602   827-876   TSP-1 type 1 repeat  
  0.0000000126   1171-1227   TSP-1 type 1 repeat  
  0.0000000353   1106-1167   TSP-1 type 1 repeat  
  0.000000107   1230-1274   TSP-1 type 1 repeat  
gi|301604275|gb|XP_002931786|   0.000000288   206-246   TSP-1 type 1 repeat  
gi|301604277|gb|XP_002931787|   0.000000301   213-253   TSP-1 type 1 repeat  
gi|301605335|gb|XP_002932288|   0.00000000000124   54-106   TSP-1 type 1 repeat  
gi|301606483|gb|XP_002932868|   0.000000000000419   548-600   TSP-1 type 1 repeat  
  0.0000000000392   1191-1251   TSP-1 type 1 repeat  
  0.00000000017   1010-1068   TSP-1 type 1 repeat  
  0.000000000419   1409-1463   TSP-1 type 1 repeat  
  0.000000000497   1067-1125   TSP-1 type 1 repeat  
  0.000000000615   1347-1404   TSP-1 type 1 repeat  
  0.000000000968   1142-1195   TSP-1 type 1 repeat  
  0.00000000432   952-1013   TSP-1 type 1 repeat  
  0.0000000102   1643-1698   TSP-1 type 1 repeat  
  0.0000000288   1296-1348   TSP-1 type 1 repeat  
  0.000000157   1460-1519   TSP-1 type 1 repeat  
  0.0000235   841-894   TSP-1 type 1 repeat  
  0.0000994   1514-1576   TSP-1 type 1 repeat  
  0.0288   892-953   TSP-1 type 1 repeat  
gi|301606781|gb|XP_002933006|   0.0000000000000262   504-561   TSP-1 type 1 repeat  
  0.000000000222   1647-1706   TSP-1 type 1 repeat  
  0.000000000445   906-964   TSP-1 type 1 repeat  
  0.000000000497   788-848   TSP-1 type 1 repeat  
  0.00000000719   1536-1599   TSP-1 type 1 repeat  
  0.0000000732   843-911   TSP-1 type 1 repeat  
  0.00000131   1491-1541   TSP-1 type 1 repeat  
  0.00000131   1595-1648   TSP-1 type 1 repeat  
gi|301606816|gb|XP_002933002|   0.00000000034   248-295   TSP-1 type 1 repeat  
gi|301608203|gb|XP_002933681|   0.00000000000000222   527-583   TSP-1 type 1 repeat  
  0.0000000000445   885-943   TSP-1 type 1 repeat  
  0.00000000131   946-996   TSP-1 type 1 repeat  
  0.0000000929   824-881   TSP-1 type 1 repeat  
gi|301608470|gb|XP_002933812|   0.00000000000000144   4658-4715   TSP-1 type 1 repeat  
  0.00000000000000314   4544-4601   TSP-1 type 1 repeat  
  0.000000000000085   4488-4544   TSP-1 type 1 repeat  
  0.000000000000157   4772-4829   TSP-1 type 1 repeat  
  0.000000000000235   4715-4772   TSP-1 type 1 repeat  
  0.00000000000654   4600-4658   TSP-1 type 1 repeat  
gi|301608828|gb|XP_002933997|   0.0000000000994   592-655   TSP-1 type 1 repeat  
  0.000000000889   996-1040   TSP-1 type 1 repeat  
  0.00000000249   179-226   TSP-1 type 1 repeat  
  0.0000000301   335-388   TSP-1 type 1 repeat  
  0.000000275   1323-1387   TSP-1 type 1 repeat  
  0.000000353   1122-1176   TSP-1 type 1 repeat  
  0.00000222   732-785   TSP-1 type 1 repeat  
  0.0000144   1243-1266   TSP-1 type 1 repeat  
  0.0000785   397-473   TSP-1 type 1 repeat  
  0.000235   1178-1228   TSP-1 type 1 repeat  
  0.000432   794-862   TSP-1 type 1 repeat  
  0.000615   659-727   TSP-1 type 1 repeat  
  0.000693   863-917   TSP-1 type 1 repeat  
  0.000981   920-991   TSP-1 type 1 repeat  
  0.00327   104-174   TSP-1 type 1 repeat  
  0.00445   1050-1121   TSP-1 type 1 repeat  
  0.00759   479-532   TSP-1 type 1 repeat  
  0.0314   43-95   TSP-1 type 1 repeat  
gi|301609377|gb|XP_002934253|   0.00000000000196   550-606   TSP-1 type 1 repeat  
  0.00000000000693   861-921   TSP-1 type 1 repeat  
  0.00000000157   805-861   TSP-1 type 1 repeat  
  0.0000000157   979-1030   TSP-1 type 1 repeat  
  0.000000732   924-979   TSP-1 type 1 repeat  
gi|301609932|gb|XP_002934514|   0.0000000000000196   387-443   TSP-1 type 1 repeat  
  0.0000000000011   501-556   TSP-1 type 1 repeat  
  0.00000000000445   448-497   TSP-1 type 1 repeat  
  0.00000000000536   245-297   TSP-1 type 1 repeat  
  0.0000000000157   335-384   TSP-1 type 1 repeat  
gi|301611137|gb|XP_002935103|   0.00000000000000131   554-611   TSP-1 type 1 repeat  
  0.0000000000235   1069-1119   TSP-1 type 1 repeat  
  0.0000000000549   865-930   TSP-1 type 1 repeat  
  0.000000000549   933-990   TSP-1 type 1 repeat  
  0.0000000275   994-1057   TSP-1 type 1 repeat  
  0.00000209   815-870   TSP-1 type 1 repeat  
gi|301611300|gb|XP_002935179|   0.0000000000000183   545-601   TSP-1 type 1 repeat  
  0.000000000118   1015-1066   TSP-1 type 1 repeat  
  0.000000000235   882-947   TSP-1 type 1 repeat  
  0.000000000366   950-1008   TSP-1 type 1 repeat  
  0.0249   840-888   TSP-1 type 1 repeat  
gi|301611992|gb|XP_002935503|   0.000000000327   1264-1321   TSP-1 type 1 repeat  
  0.000000000353   41-78   TSP-1 type 1 repeat  
  0.000000000667   1088-1145   TSP-1 type 1 repeat  
  0.00000000235   1146-1202   TSP-1 type 1 repeat  
  0.00000000484   1324-1376   TSP-1 type 1 repeat  
  0.000000523   1206-1259   TSP-1 type 1 repeat  
  0.0000602   1035-1085   TSP-1 type 1 repeat  
gi|301612468|gb|XP_002935740|   0.00000000000000497   552-606   TSP-1 type 1 repeat  
  0.0000000327   859-913   TSP-1 type 1 repeat  
gi|301613744|gb|XP_002936367|   0.0000000000000209   342-397   TSP-1 type 1 repeat  
  0.000000000000235   397-452   TSP-1 type 1 repeat  
  0.0000000000262   294-337   TSP-1 type 1 repeat  
  0.00000000127   452-507   TSP-1 type 1 repeat  
gi|301613772|gb|XP_002936380|   0.000000000144   93-145   TSP-1 type 1 repeat  
gi|301613805|gb|XP_002936397|   0.00000000000000128   576-626   TSP-1 type 1 repeat  
  0.00000000366   995-1045   TSP-1 type 1 repeat  
  0.00000000445   935-992   TSP-1 type 1 repeat  
  0.0000000445   871-930   TSP-1 type 1 repeat  
gi|301614594|gb|XP_002936776|   0.000000000968   343-392   TSP-1 type 1 repeat  
gi|301614616|gb|XP_002936783|   0.0000000000000183   227-277   TSP-1 type 1 repeat  
  0.00000000706   281-335   TSP-1 type 1 repeat  
gi|301615045|gb|XP_002936993|   0.0000000183   107-155   TSP-1 type 1 repeat  
gi|301615086|gb|XP_002937012|   0.000000000106   41-98   TSP-1 type 1 repeat  
  0.00000000549   719-770   TSP-1 type 1 repeat  
  0.00000000955   539-607   TSP-1 type 1 repeat  
  0.0000000144   653-716   TSP-1 type 1 repeat  
  0.00000379   609-659   TSP-1 type 1 repeat  
  0.0000068   486-544   TSP-1 type 1 repeat  
gi|301615317|gb|XP_002937118|   0.0000000628   82-128   TSP-1 type 1 repeat  
gi|301615580|gb|XP_002937245|   0.00000000000000101   494-552   TSP-1 type 1 repeat  
  0.00000000000000575   440-495   TSP-1 type 1 repeat  
  0.0000000000549   385-431   TSP-1 type 1 repeat  
gi|301616536|gb|XP_002937716|   0.0000000000536   707-759   TSP-1 type 1 repeat  
  0.000000000183   529-585   TSP-1 type 1 repeat  
  0.000000000432   648-704   TSP-1 type 1 repeat  
  0.000000000811   471-528   TSP-1 type 1 repeat  
  0.000000314   589-642   TSP-1 type 1 repeat  
  0.0000116   419-468   TSP-1 type 1 repeat  
gi|301617169|gb|XP_002938019|   0.0000144   190-233   TSP-1 type 1 repeat  
gi|301617447|gb|XP_002938155|   0.0000000000000118   550-606   TSP-1 type 1 repeat  
  0.000000000262   914-973   TSP-1 type 1 repeat  
  0.0000000471   864-914   TSP-1 type 1 repeat  
gi|301617961|gb|XP_002938402|   0.0000000051   160-213   TSP-1 type 1 repeat  
gi|301618245|gb|XP_002938534|   0.0000000000615   74-129   TSP-1 type 1 repeat  
  0.000000000105   20-74   TSP-1 type 1 repeat  
gi|301618409|gb|XP_002938612|   0.0000000000000602   530-585   TSP-1 type 1 repeat  
  0.000000000249   874-930   TSP-1 type 1 repeat  
  0.00000000497   811-870   TSP-1 type 1 repeat  
  0.0000000392   983-1040   TSP-1 type 1 repeat  
  0.0000000589   924-988   TSP-1 type 1 repeat  
gi|301619095|gb|XP_002938937|   0.000000458   40-88   TSP-1 type 1 repeat  
  0.000863   545-591   TSP-1 type 1 repeat  
gi|301619231|gb|XP_002939005|   0.000000000000017   248-300   TSP-1 type 1 repeat  
  0.000000000126   302-356   TSP-1 type 1 repeat  
gi|301619358|gb|XP_002939058|   0.000000000000536   186-242   TSP-1 type 1 repeat  
  0.00000000000484   1270-1327   TSP-1 type 1 repeat  
  0.00000000017   622-685   TSP-1 type 1 repeat  
  0.00000000209   1021-1078   TSP-1 type 1 repeat  
  0.00000000641   1397-1461   TSP-1 type 1 repeat  
  0.0000000222   356-407   TSP-1 type 1 repeat  
  0.000000157   1153-1202   TSP-1 type 1 repeat  
  0.000000693   688-756   TSP-1 type 1 repeat  
  0.00000131   761-814   TSP-1 type 1 repeat  
  0.000017   1325-1375   TSP-1 type 1 repeat  
  0.0000445   1077-1148   TSP-1 type 1 repeat  
  0.000196   892-946   TSP-1 type 1 repeat  
  0.000628   1204-1260   TSP-1 type 1 repeat  
  0.000876   417-489   TSP-1 type 1 repeat  
  0.00114   503-565   TSP-1 type 1 repeat  
  0.00235   112-185   TSP-1 type 1 repeat  
  0.0275   819-891   TSP-1 type 1 repeat  
  0.0327   949-1020   TSP-1 type 1 repeat  
gi|301619879|gb|XP_002939314|   0.0000000000000497   465-515   TSP-1 type 1 repeat  
  0.0000000000863   894-951   TSP-1 type 1 repeat  
  0.00000000392   779-844   TSP-1 type 1 repeat  
  0.00000000837   723-784   TSP-1 type 1 repeat  
  0.00000392   847-889   TSP-1 type 1 repeat  
gi|301620396|gb|XP_002939562|   0.0000157   195-241   TSP-1 type 1 repeat  
gi|301621623|gb|XP_002940148|   0.000000000262   419-479   TSP-1 type 1 repeat  
  0.0000000012   706-760   TSP-1 type 1 repeat  
  0.00000000209   571-625   TSP-1 type 1 repeat  
  0.00000000275   763-820   TSP-1 type 1 repeat  
  0.00000000811   474-534   TSP-1 type 1 repeat  
  0.0000000314   821-881   TSP-1 type 1 repeat  
  0.0000000366   75-123   TSP-1 type 1 repeat  
  0.0000000419   1546-1612   TSP-1 type 1 repeat  
  0.000000458   1494-1551   TSP-1 type 1 repeat  
  0.00000157   341-401   TSP-1 type 1 repeat  
  0.00000275   1667-1729   TSP-1 type 1 repeat  
  0.00000575   647-703   TSP-1 type 1 repeat  
  0.0034   1612-1671   TSP-1 type 1 repeat  
gi|301621662|gb|XP_002940163|   0.0000000131   27-75   TSP-1 type 1 repeat  
  0.0000000288   337-385   TSP-1 type 1 repeat  
gi|301621664|gb|XP_002940164|   0.00000000235   566-615   TSP-1 type 1 repeat  
  0.000000183   24-78   TSP-1 type 1 repeat  
  0.00000144   80-128   TSP-1 type 1 repeat  
gi|301622142|gb|XP_002940398|   0.00000000000000445   584-639   TSP-1 type 1 repeat  
  0.00000000144   1003-1049   TSP-1 type 1 repeat  
  0.00000000693   942-1000   TSP-1 type 1 repeat  
  0.00000000968   881-938   TSP-1 type 1 repeat  
gi|301622739|gb|XP_002940685|   0.00000000000000128   509-566   TSP-1 type 1 repeat  
  0.0000000458   818-871   TSP-1 type 1 repeat  
  0.0000000484   869-928   TSP-1 type 1 repeat  
gi|301623653|gb|XP_002941130|   0.0000000000017   303-361   TSP-1 type 1 repeat  
  0.00000000000706   27-80   TSP-1 type 1 repeat  
  0.0000000000111   367-425   TSP-1 type 1 repeat  
  0.00000000183   509-565   TSP-1 type 1 repeat  
  0.000000366   454-504   TSP-1 type 1 repeat  
gi|301623728|gb|XP_002941167|   0.00000000746   38-91   TSP-1 type 1 repeat  
gi|301626610|gb|XP_002942483|   0.00000000000000222   519-575   TSP-1 type 1 repeat  
gi|301626624|gb|XP_002942490|   0.0000000000000746   370-426   TSP-1 type 1 repeat  
  0.000000000746   1282-1343   TSP-1 type 1 repeat  
  0.00000000222   774-826   TSP-1 type 1 repeat  
  0.00000000549   656-712   TSP-1 type 1 repeat  
  0.0000000458   1173-1236   TSP-1 type 1 repeat  
  0.000000144   1231-1285   TSP-1 type 1 repeat  
  0.000000314   1128-1178   TSP-1 type 1 repeat  
  0.0000301   708-770   TSP-1 type 1 repeat  
gi|301626898|gb|XP_002942623|   0.00000000000000105   3307-3364   TSP-1 type 1 repeat  
  0.00000000000000301   3885-3942   TSP-1 type 1 repeat  
  0.00000000000000392   5021-5071   TSP-1 type 1 repeat  
  0.0000000000000157   4572-4630   TSP-1 type 1 repeat  
  0.0000000000000772   4774-4825   TSP-1 type 1 repeat  
  0.0000000000000916   4343-4392   TSP-1 type 1 repeat  
  0.00000000000017   3469-3520   TSP-1 type 1 repeat  
  0.000000000000484   3687-3745   TSP-1 type 1 repeat  
  0.000000000000746   3941-3999   TSP-1 type 1 repeat  
  0.00000000000157   5575-5632   TSP-1 type 1 repeat  
  0.0000000000157   5651-5707   TSP-1 type 1 repeat  
  0.000000000126   4713-4772   TSP-1 type 1 repeat  
  0.000000000222   1814-1863   TSP-1 type 1 repeat  
  0.000000000262   5369-5423   TSP-1 type 1 repeat  
  0.000000000288   5526-5576   TSP-1 type 1 repeat  
  0.000000000654   4397-4447   TSP-1 type 1 repeat  
  0.0000000017   4925-4980   TSP-1 type 1 repeat  
  0.00000000536   5082-5133   TSP-1 type 1 repeat  
  0.00000000785   3254-3307   TSP-1 type 1 repeat  
  0.000000017   3529-3588   TSP-1 type 1 repeat  
  0.0000000249   4170-4218   TSP-1 type 1 repeat  
  0.0000000288   4100-4145   TSP-1 type 1 repeat  
  0.000000128   3749-3789   TSP-1 type 1 repeat  
  0.000000405   4649-4702   TSP-1 type 1 repeat  
  0.000000536   2026-2084   TSP-1 type 1 repeat  
  0.00000732   1869-1909   TSP-1 type 1 repeat  
  0.000262   5132-5186   TSP-1 type 1 repeat  
  0.0109   5292-5363   TSP-1 type 1 repeat  
gi|301627601|gb|XP_002942962|   0.00000000000000523   707-763   TSP-1 type 1 repeat  
  0.00000000235   1448-1512   TSP-1 type 1 repeat  
  0.000000222   1060-1126   TSP-1 type 1 repeat  
  0.0000144   1326-1394   TSP-1 type 1 repeat  
  0.0000288   1130-1186   TSP-1 type 1 repeat  
  0.00034   1398-1454   TSP-1 type 1 repeat  
  0.00129   1267-1332   TSP-1 type 1 repeat  
  0.0109   1215-1272   TSP-1 type 1 repeat  
  0.0249   1017-1066   TSP-1 type 1 repeat  
gi|301628083|gb|XP_002943190|   6.41e-16   10-68   TSP-1 type 1 repeat  
  0.00000103   68-114   TSP-1 type 1 repeat  
gi|350529430|ref|NP_001093674|   0.0000000000000209   261-312   TSP-1 type 1 repeat  
  0.0000000112   315-369   TSP-1 type 1 repeat  
gi|49522799|gb|AAH74554|   0.000000000484   539-584   TSP-1 type 1 repeat  
gi|50370300|gb|AAH76972|   0.000000000288   565-614   TSP-1 type 1 repeat  
  0.0000000288   24-78   TSP-1 type 1 repeat  
  0.00000122   80-128   TSP-1 type 1 repeat  
gi|51512948|gb|AAH80332|   0.0000000000000654   510-566   TSP-1 type 1 repeat  
  0.000068   801-857   TSP-1 type 1 repeat  
gi|53749700|ref|NP_001005445|   0.000000000484   539-584   TSP-1 type 1 repeat  
gi|54038212|gb|AAH84446|   0.00000000000759   244-298   TSP-1 type 1 repeat  
  0.00000000000889   124-172   TSP-1 type 1 repeat  
  0.000000000484   72-120   TSP-1 type 1 repeat  
  0.0000000144   177-239   TSP-1 type 1 repeat  
  0.0000000419   302-361   TSP-1 type 1 repeat  
  0.0000000706   370-405   TSP-1 type 1 repeat  
gi|55741966|ref|NP_001006864|   0.000000000288   565-614   TSP-1 type 1 repeat  
  0.0000000288   24-78   TSP-1 type 1 repeat  
  0.00000122   80-128   TSP-1 type 1 repeat  
gi|56118266|ref|NP_001007897|   0.0000000000000654   510-566   TSP-1 type 1 repeat  
  0.000068   801-857   TSP-1 type 1 repeat  
gi|56556235|gb|AAH87808|   0.0000732   189-233   TSP-1 type 1 repeat  
gi|56788861|gb|AAH88569|   0.00000249   145-196   TSP-1 type 1 repeat  
gi|56789647|gb|AAH88556|   0.000000458   42-90   TSP-1 type 1 repeat  
  0.000157   547-593   TSP-1 type 1 repeat  
gi|58331925|ref|NP_001011066|   0.00000000000759   244-298   TSP-1 type 1 repeat  
  0.00000000000889   124-172   TSP-1 type 1 repeat  
  0.000000000484   72-120   TSP-1 type 1 repeat  
  0.0000000144   177-239   TSP-1 type 1 repeat  
  0.0000000419   302-361   TSP-1 type 1 repeat  
  0.0000000706   370-405   TSP-1 type 1 repeat  
gi|58332178|ref|NP_001011237|   0.0000732   189-233   TSP-1 type 1 repeat  
gi|58332624|ref|NP_001011386|   0.00000249   145-196   TSP-1 type 1 repeat  
gi|60551248|gb|AAH91005|   0.00000157   192-236   TSP-1 type 1 repeat  
gi|62632715|ref|NP_001015042|   0.00000157   192-236   TSP-1 type 1 repeat  
gi|82179383|sp|Q5M7L6|   0.00000249   145-196   TSP-1 type 1 repeat  
gi|89268644|gb|CAJ82439|   0.0000000000863   252-301   TSP-1 type 1 repeat  
gi|89271303|gb|CAJ82464|   0.000000157   72-114   TSP-1 type 1 repeat  
 
Weak hits:
gi|301612181|gb|XP_002935596|   0.0222   123-156   TSP-1 type 1 repeat  
gi|301612183|gb|XP_002935597|   0.0353   170-204   TSP-1 type 1 repeat  
gi|301614710|gb|XP_002936836|   0.0876   174-204   TSP-1 type 1 repeat  
gi|301620266|gb|XP_002939502|   0.000122   109-148   TSP-1 type 1 repeat  
gi|301632777|gb|XP_002945457|   0.0314   175-209   TSP-1 type 1 repeat  

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Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

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Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.