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  Home > Genomes > Papio anubis 76 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Papio anubis 76

Assignment details

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Papio anubis 76 has 275 significant domains in 67 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000000014   0.00000000124   974-1025   TSP-1 type 1 repeat  
  0.00000000327   912-970   TSP-1 type 1 repeat  
  0.00000000929   44-77   TSP-1 type 1 repeat  
  0.0000000123   783-841   TSP-1 type 1 repeat  
  0.0000000131   725-783   TSP-1 type 1 repeat  
  0.00000085   845-908   TSP-1 type 1 repeat  
  0.000458   668-723   TSP-1 type 1 repeat  
ENSPANP00000000229   0.00000000968   277-325   TSP-1 type 1 repeat  
ENSPANP00000001173   8.5e-17   586-643   TSP-1 type 1 repeat  
  0.0000000000811   1123-1175   TSP-1 type 1 repeat  
  0.00000000131   933-989   TSP-1 type 1 repeat  
  0.00000000523   992-1046   TSP-1 type 1 repeat  
  0.0000000667   1052-1113   TSP-1 type 1 repeat  
  0.000746   879-927   TSP-1 type 1 repeat  
ENSPANP00000001220   8.11e-17   753-811   TSP-1 type 1 repeat  
  0.00000000000000209   699-750   TSP-1 type 1 repeat  
  0.00000000000000432   511-561   TSP-1 type 1 repeat  
  0.000000000366   566-617   TSP-1 type 1 repeat  
  0.0000000824   812-857   TSP-1 type 1 repeat  
  0.000000405   455-508   TSP-1 type 1 repeat  
ENSPANP00000001234   0.000000000000209   556-612   TSP-1 type 1 repeat  
  0.00000000000706   1209-1268   TSP-1 type 1 repeat  
  0.0000000000379   1359-1420   TSP-1 type 1 repeat  
  0.000000000353   1079-1139   TSP-1 type 1 repeat  
  0.00000000275   1159-1211   TSP-1 type 1 repeat  
  0.00000000366   1023-1082   TSP-1 type 1 repeat  
  0.0000000085   1660-1714   TSP-1 type 1 repeat  
  0.00000000902   1308-1364   TSP-1 type 1 repeat  
  0.0000000392   1425-1479   TSP-1 type 1 repeat  
  0.000000732   965-1027   TSP-1 type 1 repeat  
  0.00000196   1474-1535   TSP-1 type 1 repeat  
  0.00000262   851-906   TSP-1 type 1 repeat  
  0.000916   904-966   TSP-1 type 1 repeat  
  0.017   1601-1643   TSP-1 type 1 repeat  
ENSPANP00000001236   0.00000000000209   137-186   TSP-1 type 1 repeat  
  0.0000000000114   257-308   TSP-1 type 1 repeat  
  0.000000000222   189-249   TSP-1 type 1 repeat  
  0.00000000876   77-132   TSP-1 type 1 repeat  
  0.000000209   311-371   TSP-1 type 1 repeat  
  0.00000602   376-415   TSP-1 type 1 repeat  
ENSPANP00000001245   0.000000000157   143-196   TSP-1 type 1 repeat  
ENSPANP00000002168   0.000000000183   343-393   TSP-1 type 1 repeat  
ENSPANP00000002465   0.00000000706   986-1042   TSP-1 type 1 repeat  
  0.00000000798   921-982   TSP-1 type 1 repeat  
  0.000000034   1135-1181   TSP-1 type 1 repeat  
  0.0000000432   641-691   TSP-1 type 1 repeat  
  0.0000000575   1044-1088   TSP-1 type 1 repeat  
ENSPANP00000002542   0.000000000000314   565-621   TSP-1 type 1 repeat  
  0.000000000112   851-908   TSP-1 type 1 repeat  
  0.000000000667   912-968   TSP-1 type 1 repeat  
  0.0000000196   1026-1077   TSP-1 type 1 repeat  
  0.00000183   971-1026   TSP-1 type 1 repeat  
ENSPANP00000002545   0.00000000000000262   541-596   TSP-1 type 1 repeat  
  0.00000000183   1476-1535   TSP-1 type 1 repeat  
  0.00000000523   944-996   TSP-1 type 1 repeat  
  0.0000000183   1423-1476   TSP-1 type 1 repeat  
  0.0000000955   824-882   TSP-1 type 1 repeat  
  0.000000405   1364-1428   TSP-1 type 1 repeat  
  0.000000445   1319-1369   TSP-1 type 1 repeat  
  0.00000116   881-940   TSP-1 type 1 repeat  
ENSPANP00000002638   0.0000000000000126   561-616   TSP-1 type 1 repeat  
  0.00000000902   980-1033   TSP-1 type 1 repeat  
  0.0000000144   913-980   TSP-1 type 1 repeat  
  0.000000157   857-918   TSP-1 type 1 repeat  
ENSPANP00000002729   0.0000102   212-257   TSP-1 type 1 repeat  
ENSPANP00000003181   0.0000000000000392   396-452   TSP-1 type 1 repeat  
  0.000000000000719   457-507   TSP-1 type 1 repeat  
  0.00000000000497   510-565   TSP-1 type 1 repeat  
  0.0000000000314   344-393   TSP-1 type 1 repeat  
  0.000000000196   253-301   TSP-1 type 1 repeat  
ENSPANP00000003329   0.00000536   147-200   TSP-1 type 1 repeat  
ENSPANP00000003604   0.0000314   206-249   TSP-1 type 1 repeat  
ENSPANP00000003616   0.0000000000000314   64-115   TSP-1 type 1 repeat  
  0.0000000017   118-172   TSP-1 type 1 repeat  
ENSPANP00000003784   0.000000000262   27-74   TSP-1 type 1 repeat  
  0.000000000379   445-508   TSP-1 type 1 repeat  
  0.00000000301   184-237   TSP-1 type 1 repeat  
  0.000000235   585-637   TSP-1 type 1 repeat  
  0.0000012   512-580   TSP-1 type 1 repeat  
  0.0000536   643-714   TSP-1 type 1 repeat  
  0.000615   715-769   TSP-1 type 1 repeat  
  0.00196   328-390   TSP-1 type 1 repeat  
  0.00575   245-326   TSP-1 type 1 repeat  
  0.00837   769-833   TSP-1 type 1 repeat  
  0.0837   406-444   TSP-1 type 1 repeat  
ENSPANP00000004063   0.000000000000068   349-404   TSP-1 type 1 repeat  
  0.00000000000131   298-344   TSP-1 type 1 repeat  
  0.00000000034   404-459   TSP-1 type 1 repeat  
  0.000000000693   463-510   TSP-1 type 1 repeat  
ENSPANP00000004099   0.00000000000000484   561-616   TSP-1 type 1 repeat  
  0.000000000144   980-1026   TSP-1 type 1 repeat  
  0.00000000183   919-977   TSP-1 type 1 repeat  
  0.00000000706   857-915   TSP-1 type 1 repeat  
ENSPANP00000004793   0.00000000124   975-1026   TSP-1 type 1 repeat  
  0.00000000327   913-971   TSP-1 type 1 repeat  
  0.00000000929   45-78   TSP-1 type 1 repeat  
  0.0000000123   784-842   TSP-1 type 1 repeat  
  0.0000000131   726-784   TSP-1 type 1 repeat  
  0.00000085   846-909   TSP-1 type 1 repeat  
  0.000458   669-724   TSP-1 type 1 repeat  
ENSPANP00000005102   0.000000000000123   567-621   TSP-1 type 1 repeat  
  0.000000196   877-930   TSP-1 type 1 repeat  
ENSPANP00000005243   0.00000000000183   125-172   TSP-1 type 1 repeat  
  0.00000000000746   1214-1271   TSP-1 type 1 repeat  
  0.000000000034   561-625   TSP-1 type 1 repeat  
  0.00000000144   962-1021   TSP-1 type 1 repeat  
  0.00000000523   291-344   TSP-1 type 1 repeat  
  0.00000017   702-755   TSP-1 type 1 repeat  
  0.000000235   628-697   TSP-1 type 1 repeat  
  0.000000262   1341-1405   TSP-1 type 1 repeat  
  0.00000732   1266-1319   TSP-1 type 1 repeat  
  0.0000109   1020-1090   TSP-1 type 1 repeat  
  0.0000157   1096-1146   TSP-1 type 1 repeat  
  0.0000628   833-888   TSP-1 type 1 repeat  
  0.0000942   352-426   TSP-1 type 1 repeat  
  0.000392   1149-1205   TSP-1 type 1 repeat  
  0.000641   439-504   TSP-1 type 1 repeat  
  0.0183   894-961   TSP-1 type 1 repeat  
  0.0484   47-120   TSP-1 type 1 repeat  
ENSPANP00000005450   0.0000000000000144   2550-2607   TSP-1 type 1 repeat  
  0.0000000000000523   4003-4060   TSP-1 type 1 repeat  
  0.000000000000667   2980-3037   TSP-1 type 1 repeat  
  0.00000000000085   4254-4304   TSP-1 type 1 repeat  
  0.00000000000105   2824-2880   TSP-1 type 1 repeat  
  0.00000000000589   2713-2764   TSP-1 type 1 repeat  
  0.00000000000628   3252-3300   TSP-1 type 1 repeat  
  0.00000000011   3810-3867   TSP-1 type 1 repeat  
  0.000000000262   3643-3693   TSP-1 type 1 repeat  
  0.00000000196   3946-4003   TSP-1 type 1 repeat  
  0.00000000209   3472-3520   TSP-1 type 1 repeat  
  0.00000000654   1699-1748   TSP-1 type 1 repeat  
  0.00000000902   3183-3243   TSP-1 type 1 repeat  
  0.0000000275   3406-3451   TSP-1 type 1 repeat  
  0.0000000484   4617-4670   TSP-1 type 1 repeat  
  0.0000000785   4771-4820   TSP-1 type 1 repeat  
  0.0000000811   1754-1807   TSP-1 type 1 repeat  
  0.000000144   2497-2550   TSP-1 type 1 repeat  
  0.00000034   3041-3081   TSP-1 type 1 repeat  
  0.000000785   2772-2820   TSP-1 type 1 repeat  
  0.000000824   3882-3930   TSP-1 type 1 repeat  
  0.00000235   1911-1969   TSP-1 type 1 repeat  
  0.00000445   4158-4213   TSP-1 type 1 repeat  
  0.000017   4317-4367   TSP-1 type 1 repeat  
  0.00196   4366-4423   TSP-1 type 1 repeat  
ENSPANP00000005634   0.00000693   127-172   TSP-1 type 1 repeat  
ENSPANP00000006088   9.81e-16   526-582   TSP-1 type 1 repeat  
  0.0000000000981   828-881   TSP-1 type 1 repeat  
ENSPANP00000006157   0.0000119   229-273   TSP-1 type 1 repeat  
ENSPANP00000006446   0.0000000000000445   77-127   TSP-1 type 1 repeat  
  0.0000000011   136-183   TSP-1 type 1 repeat  
ENSPANP00000006623   0.00000000000405   737-792   TSP-1 type 1 repeat  
  0.0000000000262   681-737   TSP-1 type 1 repeat  
  0.0000000000366   792-847   TSP-1 type 1 repeat  
  0.00000000131   628-678   TSP-1 type 1 repeat  
  0.000000017   881-934   TSP-1 type 1 repeat  
  0.000000876   570-616   TSP-1 type 1 repeat  
ENSPANP00000006969   0.000000000000209   545-600   TSP-1 type 1 repeat  
  0.00000000327   887-943   TSP-1 type 1 repeat  
  0.0000000157   824-883   TSP-1 type 1 repeat  
  0.000000034   1000-1053   TSP-1 type 1 repeat  
  0.0000000497   942-1001   TSP-1 type 1 repeat  
ENSPANP00000007575   0.00000000000000379   338-393   TSP-1 type 1 repeat  
  0.00000000011   759-805   TSP-1 type 1 repeat  
  0.00000000144   698-756   TSP-1 type 1 repeat  
  0.00000000549   636-694   TSP-1 type 1 repeat  
ENSPANP00000009001   0.0000000000902   547-592   TSP-1 type 1 repeat  
  0.00000301   63-112   TSP-1 type 1 repeat  
ENSPANP00000009533   0.000000000209   539-584   TSP-1 type 1 repeat  
  0.0000131   37-84   TSP-1 type 1 repeat  
ENSPANP00000009545   0.0000000000000706   586-642   TSP-1 type 1 repeat  
  0.0000000000602   1107-1165   TSP-1 type 1 repeat  
  0.0000000000719   1183-1239   TSP-1 type 1 repeat  
  0.0000000000824   1380-1439   TSP-1 type 1 repeat  
  0.00000000222   1049-1108   TSP-1 type 1 repeat  
  0.00000000458   1553-1612   TSP-1 type 1 repeat  
  0.00000000484   993-1053   TSP-1 type 1 repeat  
  0.00000000589   1234-1295   TSP-1 type 1 repeat  
  0.00000000785   1444-1498   TSP-1 type 1 repeat  
  0.00000000798   1327-1383   TSP-1 type 1 repeat  
  0.0000000209   1680-1728   TSP-1 type 1 repeat  
  0.0000000235   1615-1675   TSP-1 type 1 repeat  
  0.000000288   1496-1554   TSP-1 type 1 repeat  
  0.000085   877-932   TSP-1 type 1 repeat  
  0.0111   938-993   TSP-1 type 1 repeat  
ENSPANP00000009621   0.00000000000000118   557-613   TSP-1 type 1 repeat  
  0.000000000876   905-966   TSP-1 type 1 repeat  
  0.0000000068   856-909   TSP-1 type 1 repeat  
ENSPANP00000009671   0.00000000000000876   241-291   TSP-1 type 1 repeat  
  0.000000000301   295-349   TSP-1 type 1 repeat  
ENSPANP00000010089   0.00000484   227-272   TSP-1 type 1 repeat  
ENSPANP00000010186   0.00000000109   499-545   TSP-1 type 1 repeat  
  0.000000131   26-73   TSP-1 type 1 repeat  
ENSPANP00000010189   4.58e-16   583-640   TSP-1 type 1 repeat  
ENSPANP00000011425   0.0000000000000116   514-570   TSP-1 type 1 repeat  
  0.000000000876   890-950   TSP-1 type 1 repeat  
  0.00000000667   839-891   TSP-1 type 1 repeat  
ENSPANP00000011560   0.0000000000889   545-590   TSP-1 type 1 repeat  
  0.00000301   63-112   TSP-1 type 1 repeat  
ENSPANP00000011618   0.00000000314   24-78   TSP-1 type 1 repeat  
  0.0000000288   564-612   TSP-1 type 1 repeat  
  0.00000157   80-128   TSP-1 type 1 repeat  
ENSPANP00000011705   0.00000301   144-196   TSP-1 type 1 repeat  
ENSPANP00000011885   0.0000000144   114-169   TSP-1 type 1 repeat  
ENSPANP00000012231   0.000000000549   35-86   TSP-1 type 1 repeat  
ENSPANP00000014142   0.00000000196   149-200   TSP-1 type 1 repeat  
ENSPANP00000014227   0.0000000000523   495-552   TSP-1 type 1 repeat  
  0.000000000144   319-376   TSP-1 type 1 repeat  
  0.000000000157   377-433   TSP-1 type 1 repeat  
  0.000000000746   556-607   TSP-1 type 1 repeat  
  0.00000106   437-490   TSP-1 type 1 repeat  
  0.00000366   266-316   TSP-1 type 1 repeat  
ENSPANP00000014325   0.0000000000000667   536-592   TSP-1 type 1 repeat  
  0.00000000575   1574-1633   TSP-1 type 1 repeat  
  0.00000000641   1466-1526   TSP-1 type 1 repeat  
  0.00000000706   944-994   TSP-1 type 1 repeat  
  0.0000000314   820-879   TSP-1 type 1 repeat  
  0.00000017   1523-1575   TSP-1 type 1 repeat  
  0.000000314   1416-1468   TSP-1 type 1 repeat  
  0.000183   876-942   TSP-1 type 1 repeat  
ENSPANP00000014359   0.0000000000392   721-774   TSP-1 type 1 repeat  
  0.000000000589   434-494   TSP-1 type 1 repeat  
  0.0000000017   489-549   TSP-1 type 1 repeat  
  0.00000000196   586-640   TSP-1 type 1 repeat  
  0.0000000196   1441-1498   TSP-1 type 1 repeat  
  0.0000000209   90-138   TSP-1 type 1 repeat  
  0.0000000458   774-834   TSP-1 type 1 repeat  
  0.0000000458   1502-1559   TSP-1 type 1 repeat  
  0.000000157   830-895   TSP-1 type 1 repeat  
  0.000000968   1615-1670   TSP-1 type 1 repeat  
  0.0000034   356-416   TSP-1 type 1 repeat  
  0.00000497   662-718   TSP-1 type 1 repeat  
ENSPANP00000014505   0.0000000000000122   543-593   TSP-1 type 1 repeat  
  0.000000000929   976-1032   TSP-1 type 1 repeat  
  0.00000000249   866-925   TSP-1 type 1 repeat  
  0.0000000458   928-971   TSP-1 type 1 repeat  
  0.000000068   806-865   TSP-1 type 1 repeat  
ENSPANP00000014783   0.00000000000000122   4541-4599   TSP-1 type 1 repeat  
  0.00000000000000523   4598-4656   TSP-1 type 1 repeat  
  0.0000000000000109   4486-4542   TSP-1 type 1 repeat  
  0.0000000000000157   4770-4827   TSP-1 type 1 repeat  
  0.0000000000000327   4656-4713   TSP-1 type 1 repeat  
  0.000000000000235   4712-4770   TSP-1 type 1 repeat  
ENSPANP00000015096   0.00000000000000889   518-574   TSP-1 type 1 repeat  
ENSPANP00000015440   1.7e-16   493-544   TSP-1 type 1 repeat  
  0.0000000000000112   436-491   TSP-1 type 1 repeat  
  0.000000000353   382-430   TSP-1 type 1 repeat  
ENSPANP00000015710   0.0000000000000249   383-436   TSP-1 type 1 repeat  
  0.0000000109   1068-1131   TSP-1 type 1 repeat  
  0.0000000144   738-805   TSP-1 type 1 repeat  
  0.000000249   1017-1073   TSP-1 type 1 repeat  
  0.0000085   949-1013   TSP-1 type 1 repeat  
  0.00131   684-743   TSP-1 type 1 repeat  
  0.0405   903-952   TSP-1 type 1 repeat  
ENSPANP00000015713   0.0000000000641   858-916   TSP-1 type 1 repeat  
  0.00000000955   626-692   TSP-1 type 1 repeat  
  0.0000000157   49-105   TSP-1 type 1 repeat  
  0.0000000249   749-803   TSP-1 type 1 repeat  
  0.000000392   803-863   TSP-1 type 1 repeat  
  0.00000196   569-629   TSP-1 type 1 repeat  
  0.0497   694-746   TSP-1 type 1 repeat  
ENSPANP00000015917   0.00000314   323-359   TSP-1 type 1 repeat  
ENSPANP00000016308   2.62e-17   489-546   TSP-1 type 1 repeat  
  3.79e-16   435-484   TSP-1 type 1 repeat  
  0.000000000144   379-428   TSP-1 type 1 repeat  
ENSPANP00000017070   0.000000262   132-172   TSP-1 type 1 repeat  
ENSPANP00000017214   0.00000000000124   302-360   TSP-1 type 1 repeat  
  0.0000000000445   366-424   TSP-1 type 1 repeat  
  0.000000000222   27-75   TSP-1 type 1 repeat  
  0.000000000798   486-538   TSP-1 type 1 repeat  
  0.00000000902   423-480   TSP-1 type 1 repeat  
ENSPANP00000017307   8.24e-17   563-620   TSP-1 type 1 repeat  
  0.0000000000798   1102-1154   TSP-1 type 1 repeat  
  0.00000000497   910-968   TSP-1 type 1 repeat  
  0.0000000051   971-1025   TSP-1 type 1 repeat  
  0.0000000654   1031-1092   TSP-1 type 1 repeat  
  0.00115   860-908   TSP-1 type 1 repeat  
ENSPANP00000017682   0.0000458   192-237   TSP-1 type 1 repeat  
ENSPANP00000018178   0.0000051   147-200   TSP-1 type 1 repeat  
ENSPANP00000018582   0.0000000118   74-121   TSP-1 type 1 repeat  
ENSPANP00000018720   0.00000275   198-242   TSP-1 type 1 repeat  
ENSPANP00000019198   0.000000000131   669-728   TSP-1 type 1 repeat  
  0.000000000641   1540-1607   TSP-1 type 1 repeat  
  0.000000000916   783-849   TSP-1 type 1 repeat  
  0.00000000122   432-492   TSP-1 type 1 repeat  
  0.00000000641   32-81   TSP-1 type 1 repeat  
  0.0000000111   729-788   TSP-1 type 1 repeat  
  0.0000000131   376-437   TSP-1 type 1 repeat  
  0.0000000235   529-583   TSP-1 type 1 repeat  
  0.000000235   296-359   TSP-1 type 1 repeat  
  0.000000262   610-666   TSP-1 type 1 repeat  
  0.000183   1486-1545   TSP-1 type 1 repeat  
ENSPANP00000020364   0.0000000000000589   245-296   TSP-1 type 1 repeat  
  0.000000000196   298-353   TSP-1 type 1 repeat  
ENSPANP00000020381   0.00000000000000288   552-602   TSP-1 type 1 repeat  
  0.000000000811   971-1021   TSP-1 type 1 repeat  
  0.0000000118   910-968   TSP-1 type 1 repeat  
  0.00000051   848-906   TSP-1 type 1 repeat  
 
Weak hits:
ENSPANP00000008415   0.0575   205-253   TSP-1 type 1 repeat  
ENSPANP00000008979   0.0262   172-204   TSP-1 type 1 repeat  
ENSPANP00000009519   0.00314   142-179   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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