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  Home > Genomes > Mus musculus 76_38 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Mus musculus 76_38

Assignment details

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Mus musculus 76_38 has 545 significant domains in 129 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000001156   0.00000000000034   133-182   TSP-1 type 1 repeat  
  0.00000000000111   253-303   TSP-1 type 1 repeat  
  0.000000000366   186-245   TSP-1 type 1 repeat  
  0.000000000837   73-128   TSP-1 type 1 repeat  
  0.000000122   307-367   TSP-1 type 1 repeat  
  0.00000876   375-409   TSP-1 type 1 repeat  
ENSMUSP00000005255   0.00000314   214-259   TSP-1 type 1 repeat  
ENSMUSP00000006570   0.00000000000000824   526-582   TSP-1 type 1 repeat  
ENSMUSP00000014996   0.00000000000000196   387-443   TSP-1 type 1 repeat  
  0.0000000051   750-809   TSP-1 type 1 repeat  
  0.000106   691-747   TSP-1 type 1 repeat  
  0.00262   967-1018   TSP-1 type 1 repeat  
  0.00811   909-958   TSP-1 type 1 repeat  
ENSMUSP00000015994   0.000000000667   874-932   TSP-1 type 1 repeat  
  0.00000000183   43-74   TSP-1 type 1 repeat  
  0.00000000314   689-747   TSP-1 type 1 repeat  
  0.00000000706   938-987   TSP-1 type 1 repeat  
  0.00000000981   748-805   TSP-1 type 1 repeat  
  0.000000837   809-870   TSP-1 type 1 repeat  
  0.000366   635-687   TSP-1 type 1 repeat  
ENSMUSP00000020171   0.00000157   196-241   TSP-1 type 1 repeat  
ENSMUSP00000021646   0.00000000000379   305-361   TSP-1 type 1 repeat  
  0.0000000000131   367-425   TSP-1 type 1 repeat  
  0.0000000000301   28-77   TSP-1 type 1 repeat  
  0.000000000196   423-481   TSP-1 type 1 repeat  
  0.000000000222   485-539   TSP-1 type 1 repeat  
ENSMUSP00000022788   0.00000000536   24-78   TSP-1 type 1 repeat  
  0.00000000706   564-612   TSP-1 type 1 repeat  
  0.00000732   80-128   TSP-1 type 1 repeat  
ENSMUSP00000023610   2.75e-16   557-614   TSP-1 type 1 repeat  
  0.000000000222   906-967   TSP-1 type 1 repeat  
  0.00000000119   856-910   TSP-1 type 1 repeat  
ENSMUSP00000023611   0.0000000000000929   567-621   TSP-1 type 1 repeat  
  0.000000157   878-930   TSP-1 type 1 repeat  
ENSMUSP00000026994   0.00000000000000876   241-291   TSP-1 type 1 repeat  
  0.00000000107   295-349   TSP-1 type 1 repeat  
ENSMUSP00000029188   0.00000968   191-238   TSP-1 type 1 repeat  
ENSMUSP00000029846   0.0000131   226-270   TSP-1 type 1 repeat  
ENSMUSP00000030571   0.000000000000068   352-407   TSP-1 type 1 repeat  
  0.00000000000131   301-347   TSP-1 type 1 repeat  
  0.000000000288   466-513   TSP-1 type 1 repeat  
  0.000000000419   407-462   TSP-1 type 1 repeat  
ENSMUSP00000030687   0.0000114   147-200   TSP-1 type 1 repeat  
ENSMUSP00000031663   0.0000000000379   543-589   TSP-1 type 1 repeat  
  0.00000327   62-111   TSP-1 type 1 repeat  
ENSMUSP00000034829   0.0000000000432   495-552   TSP-1 type 1 repeat  
  0.000000000127   556-607   TSP-1 type 1 repeat  
  0.000000000144   319-376   TSP-1 type 1 repeat  
  0.000000000222   377-433   TSP-1 type 1 repeat  
  0.000000759   437-490   TSP-1 type 1 repeat  
  0.00000101   266-316   TSP-1 type 1 repeat  
ENSMUSP00000035612   0.0000000000000523   342-397   TSP-1 type 1 repeat  
  0.00000000000051   397-452   TSP-1 type 1 repeat  
  0.00000000000549   294-337   TSP-1 type 1 repeat  
  0.00000000209   452-507   TSP-1 type 1 repeat  
ENSMUSP00000036330   0.0000000000000732   551-607   TSP-1 type 1 repeat  
  0.00000000000183   1200-1259   TSP-1 type 1 repeat  
  0.000000000144   1073-1130   TSP-1 type 1 repeat  
  0.000000000196   1354-1410   TSP-1 type 1 repeat  
  0.000000000562   1013-1073   TSP-1 type 1 repeat  
  0.00000000353   1415-1469   TSP-1 type 1 repeat  
  0.00000000405   956-1018   TSP-1 type 1 repeat  
  0.0000000126   1300-1355   TSP-1 type 1 repeat  
  0.0000000131   1150-1201   TSP-1 type 1 repeat  
  0.0000000746   1651-1705   TSP-1 type 1 repeat  
  0.0000000876   1468-1525   TSP-1 type 1 repeat  
  0.00000114   1520-1583   TSP-1 type 1 repeat  
  0.000017   846-898   TSP-1 type 1 repeat  
  0.00772   908-958   TSP-1 type 1 repeat  
ENSMUSP00000036631   0.000000000785   150-200   TSP-1 type 1 repeat  
ENSMUSP00000040171   0.00000000000000419   561-616   TSP-1 type 1 repeat  
  0.0000000209   976-1024   TSP-1 type 1 repeat  
  0.0000000746   913-976   TSP-1 type 1 repeat  
  0.000000144   857-914   TSP-1 type 1 repeat  
ENSMUSP00000040176   0.000000000000641   183-230   TSP-1 type 1 repeat  
  0.00000000000772   619-683   TSP-1 type 1 repeat  
  0.00000000000798   1272-1329   TSP-1 type 1 repeat  
  0.00000000235   1020-1079   TSP-1 type 1 repeat  
  0.0000000693   349-402   TSP-1 type 1 repeat  
  0.000000103   760-813   TSP-1 type 1 repeat  
  0.000000157   1403-1458   TSP-1 type 1 repeat  
  0.000000249   686-755   TSP-1 type 1 repeat  
  0.00000235   1154-1203   TSP-1 type 1 repeat  
  0.0000102   1078-1148   TSP-1 type 1 repeat  
  0.0000144   1328-1377   TSP-1 type 1 repeat  
  0.000119   891-946   TSP-1 type 1 repeat  
  0.000144   413-484   TSP-1 type 1 repeat  
  0.000432   945-1019   TSP-1 type 1 repeat  
  0.000562   1206-1256   TSP-1 type 1 repeat  
  0.00131   497-562   TSP-1 type 1 repeat  
  0.0497   105-178   TSP-1 type 1 repeat  
  0.0759   579-607   TSP-1 type 1 repeat  
ENSMUSP00000041157   0.00000000000602   610-665   TSP-1 type 1 repeat  
  0.0000000000102   667-715   TSP-1 type 1 repeat  
  0.0000000000144   554-610   TSP-1 type 1 repeat  
  0.000000000379   501-551   TSP-1 type 1 repeat  
  0.0000000144   754-807   TSP-1 type 1 repeat  
  0.00000144   443-489   TSP-1 type 1 repeat  
ENSMUSP00000041716   0.000000000222   179-226   TSP-1 type 1 repeat  
  0.00000000353   997-1045   TSP-1 type 1 repeat  
  0.00000000811   336-389   TSP-1 type 1 repeat  
  0.00000000824   597-660   TSP-1 type 1 repeat  
  0.000000235   737-789   TSP-1 type 1 repeat  
  0.00000144   664-732   TSP-1 type 1 repeat  
  0.00000902   920-996   TSP-1 type 1 repeat  
  0.000222   102-174   TSP-1 type 1 repeat  
  0.000222   867-922   TSP-1 type 1 repeat  
  0.000288   795-866   TSP-1 type 1 repeat  
  0.000628   397-478   TSP-1 type 1 repeat  
  0.000667   42-94   TSP-1 type 1 repeat  
  0.00392   480-542   TSP-1 type 1 repeat  
ENSMUSP00000042701   0.00000000719   276-324   TSP-1 type 1 repeat  
ENSMUSP00000043073   0.000000000288   432-492   TSP-1 type 1 repeat  
  0.00000000249   376-437   TSP-1 type 1 repeat  
  0.00000000445   33-81   TSP-1 type 1 repeat  
  0.0000000602   296-359   TSP-1 type 1 repeat  
ENSMUSP00000044903   2.62e-17   492-544   TSP-1 type 1 repeat  
  3.79e-16   436-485   TSP-1 type 1 repeat  
  0.0000000000405   380-429   TSP-1 type 1 repeat  
ENSMUSP00000046097   0.0000000000000405   405-461   TSP-1 type 1 repeat  
  0.00000000000118   466-516   TSP-1 type 1 repeat  
  0.00000000000275   519-574   TSP-1 type 1 repeat  
  0.0000000000327   353-402   TSP-1 type 1 repeat  
  0.00000000017   262-314   TSP-1 type 1 repeat  
ENSMUSP00000047606   0.00000157   543-575   TSP-1 type 1 repeat  
  0.00011   37-84   TSP-1 type 1 repeat  
ENSMUSP00000047730   0.0000000235   74-121   TSP-1 type 1 repeat  
ENSMUSP00000047991   1.7e-16   2388-2445   TSP-1 type 1 repeat  
  0.000000000000589   3848-3905   TSP-1 type 1 repeat  
  0.000000000000837   3085-3142   TSP-1 type 1 repeat  
  0.000000000000981   2551-2602   TSP-1 type 1 repeat  
  0.00000000000129   2817-2874   TSP-1 type 1 repeat  
  0.00000000000157   4100-4149   TSP-1 type 1 repeat  
  0.0000000000068   2662-2718   TSP-1 type 1 repeat  
  0.0000000000123   3656-3708   TSP-1 type 1 repeat  
  0.0000000000628   3481-3525   TSP-1 type 1 repeat  
  0.000000000445   3791-3848   TSP-1 type 1 repeat  
  0.00000000314   4617-4668   TSP-1 type 1 repeat  
  0.00000000798   3307-3355   TSP-1 type 1 repeat  
  0.00000000837   1572-1622   TSP-1 type 1 repeat  
  0.00000000916   3019-3085   TSP-1 type 1 repeat  
  0.0000000157   2335-2388   TSP-1 type 1 repeat  
  0.0000000288   3240-3299   TSP-1 type 1 repeat  
  0.0000000392   4462-4515   TSP-1 type 1 repeat  
  0.0000000523   1627-1666   TSP-1 type 1 repeat  
  0.0000017   4004-4058   TSP-1 type 1 repeat  
  0.00000301   3728-3775   TSP-1 type 1 repeat  
  0.00000353   2610-2658   TSP-1 type 1 repeat  
  0.0000144   4162-4212   TSP-1 type 1 repeat  
  0.0000183   2879-2918   TSP-1 type 1 repeat  
  0.0000615   1768-1826   TSP-1 type 1 repeat  
  0.000288   4215-4264   TSP-1 type 1 repeat  
ENSMUSP00000050535   0.00000000000196   1090-1146   TSP-1 type 1 repeat  
  0.0000000144   638-688   TSP-1 type 1 repeat  
  0.0000000157   918-979   TSP-1 type 1 repeat  
  0.0000000183   983-1039   TSP-1 type 1 repeat  
  0.0000000811   1042-1085   TSP-1 type 1 repeat  
ENSMUSP00000053451   0.00000102   203-242   TSP-1 type 1 repeat  
ENSMUSP00000054389   0.000017   203-246   TSP-1 type 1 repeat  
ENSMUSP00000057494   0.00000000000000288   793-849   TSP-1 type 1 repeat  
  0.00000000000000654   606-656   TSP-1 type 1 repeat  
  0.000000000000405   849-906   TSP-1 type 1 repeat  
  0.0000000000811   660-712   TSP-1 type 1 repeat  
  0.000144   907-951   TSP-1 type 1 repeat  
  0.000222   551-603   TSP-1 type 1 repeat  
ENSMUSP00000057796   0.00000000000000837   545-600   TSP-1 type 1 repeat  
  0.0000000103   948-1000   TSP-1 type 1 repeat  
  0.0000000353   1478-1537   TSP-1 type 1 repeat  
  0.0000000549   1365-1430   TSP-1 type 1 repeat  
  0.000000126   830-886   TSP-1 type 1 repeat  
  0.000000392   1425-1478   TSP-1 type 1 repeat  
  0.000000641   882-944   TSP-1 type 1 repeat  
  0.000000955   1319-1370   TSP-1 type 1 repeat  
ENSMUSP00000058552   0.00000000000000693   550-605   TSP-1 type 1 repeat  
  0.000000000942   969-1015   TSP-1 type 1 repeat  
  0.00000000366   907-966   TSP-1 type 1 repeat  
  0.0000000405   846-904   TSP-1 type 1 repeat  
ENSMUSP00000061544   0.000000000183   147-192   TSP-1 type 1 repeat  
ENSMUSP00000064570   0.000000000000432   556-612   TSP-1 type 1 repeat  
  0.00000000017   841-899   TSP-1 type 1 repeat  
  0.00000000106   903-959   TSP-1 type 1 repeat  
  0.0000000314   1017-1068   TSP-1 type 1 repeat  
  0.000000837   962-1017   TSP-1 type 1 repeat  
ENSMUSP00000066940   0.0000000000327   477-523   TSP-1 type 1 repeat  
  0.00000288   62-111   TSP-1 type 1 repeat  
ENSMUSP00000067022   0.0000000000000301   514-570   TSP-1 type 1 repeat  
  0.000000000235   890-950   TSP-1 type 1 repeat  
  0.000000000419   839-891   TSP-1 type 1 repeat  
ENSMUSP00000067325   0.00000301   144-196   TSP-1 type 1 repeat  
ENSMUSP00000067541   0.000000000196   543-587   TSP-1 type 1 repeat  
  0.000111   37-84   TSP-1 type 1 repeat  
ENSMUSP00000067701   0.00000000301   341-391   TSP-1 type 1 repeat  
ENSMUSP00000069024   1.83e-16   837-895   TSP-1 type 1 repeat  
  0.00000000000000222   782-838   TSP-1 type 1 repeat  
  0.00000000000000471   595-645   TSP-1 type 1 repeat  
  0.000000000968   650-701   TSP-1 type 1 repeat  
  0.000000123   896-941   TSP-1 type 1 repeat  
  0.00000128   539-592   TSP-1 type 1 repeat  
ENSMUSP00000069644   0.00000000000000445   540-596   TSP-1 type 1 repeat  
  0.00000000471   851-903   TSP-1 type 1 repeat  
ENSMUSP00000073220   0.00000000034   179-226   TSP-1 type 1 repeat  
  0.00000000068   1247-1297   TSP-1 type 1 repeat  
  0.00000000654   997-1054   TSP-1 type 1 repeat  
  0.0000000116   597-660   TSP-1 type 1 repeat  
  0.0000000126   336-389   TSP-1 type 1 repeat  
  0.000000379   737-789   TSP-1 type 1 repeat  
  0.000000602   1367-1431   TSP-1 type 1 repeat  
  0.00000288   664-732   TSP-1 type 1 repeat  
  0.00000353   1128-1176   TSP-1 type 1 repeat  
  0.00000379   1053-1122   TSP-1 type 1 repeat  
  0.0000144   920-996   TSP-1 type 1 repeat  
  0.0000222   1180-1233   TSP-1 type 1 repeat  
  0.0000235   1297-1350   TSP-1 type 1 repeat  
  0.000314   867-922   TSP-1 type 1 repeat  
  0.000353   102-174   TSP-1 type 1 repeat  
  0.000458   795-866   TSP-1 type 1 repeat  
  0.00112   42-94   TSP-1 type 1 repeat  
  0.00536   397-479   TSP-1 type 1 repeat  
  0.00549   480-542   TSP-1 type 1 repeat  
ENSMUSP00000074340   0.00000000000000144   4638-4696   TSP-1 type 1 repeat  
  0.00000000000000222   4582-4639   TSP-1 type 1 repeat  
  0.000000000000017   4527-4578   TSP-1 type 1 repeat  
  0.0000000000000183   4810-4867   TSP-1 type 1 repeat  
  0.0000000000000536   4696-4753   TSP-1 type 1 repeat  
  0.0000000000000902   4752-4810   TSP-1 type 1 repeat  
ENSMUSP00000074758   0.0000000000000419   259-310   TSP-1 type 1 repeat  
  0.00000000235   313-367   TSP-1 type 1 repeat  
ENSMUSP00000076003   0.0000129   208-252   TSP-1 type 1 repeat  
ENSMUSP00000077080   0.0000000000000183   245-296   TSP-1 type 1 repeat  
  0.000000000183   298-353   TSP-1 type 1 repeat  
ENSMUSP00000079041   0.00000000000000157   581-638   TSP-1 type 1 repeat  
  0.0000000000902   1127-1178   TSP-1 type 1 repeat  
  0.000000000876   919-984   TSP-1 type 1 repeat  
  0.00000000183   987-1045   TSP-1 type 1 repeat  
  0.000000157   1051-1112   TSP-1 type 1 repeat  
  0.011   877-925   TSP-1 type 1 repeat  
ENSMUSP00000084905   0.000000000000419   546-601   TSP-1 type 1 repeat  
  0.00000000314   825-884   TSP-1 type 1 repeat  
  0.00000000445   888-944   TSP-1 type 1 repeat  
  0.000000131   1001-1054   TSP-1 type 1 repeat  
  0.000000235   939-1002   TSP-1 type 1 repeat  
ENSMUSP00000088774   0.0000000000654   855-913   TSP-1 type 1 repeat  
  0.00000000981   48-105   TSP-1 type 1 repeat  
  0.0000000209   625-691   TSP-1 type 1 repeat  
  0.0000000275   746-800   TSP-1 type 1 repeat  
  0.000000314   800-860   TSP-1 type 1 repeat  
  0.00000196   568-628   TSP-1 type 1 repeat  
  0.0000589   693-743   TSP-1 type 1 repeat  
ENSMUSP00000090143   0.00000000000000719   539-589   TSP-1 type 1 repeat  
  0.000000000693   958-1008   TSP-1 type 1 repeat  
  0.0000000876   889-955   TSP-1 type 1 repeat  
  0.000000144   835-893   TSP-1 type 1 repeat  
ENSMUSP00000090287   0.0000000183   146-201   TSP-1 type 1 repeat  
ENSMUSP00000090801   2.62e-16   586-643   TSP-1 type 1 repeat  
  0.0000000000889   1124-1175   TSP-1 type 1 repeat  
  0.000000000314   985-1048   TSP-1 type 1 repeat  
  0.00000000275   932-991   TSP-1 type 1 repeat  
  0.0000000183   1054-1115   TSP-1 type 1 repeat  
  0.000157   876-931   TSP-1 type 1 repeat  
ENSMUSP00000093097   0.00000000000732   45-97   TSP-1 type 1 repeat  
ENSMUSP00000095480   0.0000000000000667   352-407   TSP-1 type 1 repeat  
  0.00000000000131   300-348   TSP-1 type 1 repeat  
  0.000000000288   466-513   TSP-1 type 1 repeat  
  0.000000000405   407-462   TSP-1 type 1 repeat  
ENSMUSP00000095984   0.0000000000000288   540-590   TSP-1 type 1 repeat  
  0.000000000085   997-1053   TSP-1 type 1 repeat  
  0.0000000183   949-992   TSP-1 type 1 repeat  
  0.0000000353   881-946   TSP-1 type 1 repeat  
  0.000000235   827-886   TSP-1 type 1 repeat  
ENSMUSP00000096257   0.0000000000746   855-912   TSP-1 type 1 repeat  
  0.000000000222   916-967   TSP-1 type 1 repeat  
  0.000000000262   679-736   TSP-1 type 1 repeat  
  0.000000000392   737-793   TSP-1 type 1 repeat  
  0.000000144   54-87   TSP-1 type 1 repeat  
  0.00000131   797-850   TSP-1 type 1 repeat  
  0.0000017   626-676   TSP-1 type 1 repeat  
ENSMUSP00000096910   0.0000011   211-251   TSP-1 type 1 repeat  
ENSMUSP00000099955   0.00000000000000288   387-443   TSP-1 type 1 repeat  
  0.00000000127   1081-1136   TSP-1 type 1 repeat  
  0.00000000746   750-809   TSP-1 type 1 repeat  
  0.00000798   1025-1078   TSP-1 type 1 repeat  
  0.000157   691-747   TSP-1 type 1 repeat  
  0.00379   967-1018   TSP-1 type 1 repeat  
  0.0119   909-958   TSP-1 type 1 repeat  
ENSMUSP00000100989   0.00000000000249   45-97   TSP-1 type 1 repeat  
ENSMUSP00000101636   0.0000000000000667   352-407   TSP-1 type 1 repeat  
  0.00000000000131   301-347   TSP-1 type 1 repeat  
  0.000000000288   466-513   TSP-1 type 1 repeat  
  0.000000000419   407-462   TSP-1 type 1 repeat  
ENSMUSP00000101638   0.0000000000000667   352-407   TSP-1 type 1 repeat  
  0.00000000000131   300-348   TSP-1 type 1 repeat  
  0.000000000288   466-513   TSP-1 type 1 repeat  
  0.000000000405   407-462   TSP-1 type 1 repeat  
ENSMUSP00000101639   0.000000000000379   299-348   TSP-1 type 1 repeat  
  0.000000000275   411-458   TSP-1 type 1 repeat  
  0.000000000419   352-407   TSP-1 type 1 repeat  
ENSMUSP00000101843   0.0000000000000419   259-310   TSP-1 type 1 repeat  
  0.00000000222   313-367   TSP-1 type 1 repeat  
ENSMUSP00000102420   0.000000000183   499-543   TSP-1 type 1 repeat  
  0.00288   3-40   TSP-1 type 1 repeat  
ENSMUSP00000102796   0.0000000000785   652-711   TSP-1 type 1 repeat  
  0.000000000275   766-832   TSP-1 type 1 repeat  
  0.000000000353   1531-1598   TSP-1 type 1 repeat  
  0.00000000124   415-475   TSP-1 type 1 repeat  
  0.00000000798   354-420   TSP-1 type 1 repeat  
  0.00000000837   512-566   TSP-1 type 1 repeat  
  0.0000000196   33-81   TSP-1 type 1 repeat  
  0.00000017   593-649   TSP-1 type 1 repeat  
  0.000000209   712-771   TSP-1 type 1 repeat  
  0.000000288   1660-1716   TSP-1 type 1 repeat  
  0.000000628   296-359   TSP-1 type 1 repeat  
  0.000235   1598-1657   TSP-1 type 1 repeat  
  0.00103   1477-1536   TSP-1 type 1 repeat  
ENSMUSP00000103102   0.0000000000000275   540-590   TSP-1 type 1 repeat  
  0.0000000000824   970-1026   TSP-1 type 1 repeat  
  0.0000000183   922-965   TSP-1 type 1 repeat  
  0.0000000419   854-919   TSP-1 type 1 repeat  
  0.000000222   800-859   TSP-1 type 1 repeat  
ENSMUSP00000105316   0.0000000000000011   581-638   TSP-1 type 1 repeat  
ENSMUSP00000105621   0.00000000157   239-293   TSP-1 type 1 repeat  
ENSMUSP00000106317   0.000000000667   499-545   TSP-1 type 1 repeat  
  0.0000000432   26-73   TSP-1 type 1 repeat  
ENSMUSP00000106946   0.00000000000000589   329-385   TSP-1 type 1 repeat  
ENSMUSP00000106947   0.00000000000000811   514-570   TSP-1 type 1 repeat  
ENSMUSP00000108682   0.000000000000116   521-577   TSP-1 type 1 repeat  
  0.000000000209   925-977   TSP-1 type 1 repeat  
  0.00000000126   1540-1599   TSP-1 type 1 repeat  
  0.0000000144   805-862   TSP-1 type 1 repeat  
  0.0000000209   1432-1492   TSP-1 type 1 repeat  
  0.000000112   1380-1434   TSP-1 type 1 repeat  
  0.000000196   1491-1541   TSP-1 type 1 repeat  
  0.00000445   860-922   TSP-1 type 1 repeat  
ENSMUSP00000108683   0.000000000000112   521-577   TSP-1 type 1 repeat  
  0.00000000123   1498-1557   TSP-1 type 1 repeat  
  0.0000000131   805-862   TSP-1 type 1 repeat  
  0.0000000196   1390-1450   TSP-1 type 1 repeat  
  0.00000011   1338-1392   TSP-1 type 1 repeat  
  0.000000196   1449-1499   TSP-1 type 1 repeat  
  0.00000301   860-922   TSP-1 type 1 repeat  
ENSMUSP00000109065   0.000000000000353   587-642   TSP-1 type 1 repeat  
  0.0000000000392   1182-1239   TSP-1 type 1 repeat  
  0.0000000000667   1107-1165   TSP-1 type 1 repeat  
  0.000000000111   1376-1435   TSP-1 type 1 repeat  
  0.000000000981   1052-1108   TSP-1 type 1 repeat  
  0.00000000353   1234-1295   TSP-1 type 1 repeat  
  0.00000000432   1549-1608   TSP-1 type 1 repeat  
  0.00000000549   992-1053   TSP-1 type 1 repeat  
  0.00000000811   1675-1723   TSP-1 type 1 repeat  
  0.00000000876   1611-1671   TSP-1 type 1 repeat  
  0.00000000929   1323-1379   TSP-1 type 1 repeat  
  0.000000017   1440-1494   TSP-1 type 1 repeat  
  0.000000116   1492-1550   TSP-1 type 1 repeat  
  0.000101   877-932   TSP-1 type 1 repeat  
  0.0068   938-993   TSP-1 type 1 repeat  
ENSMUSP00000112503   0.00000000000405   550-607   TSP-1 type 1 repeat  
  0.000000000968   300-357   TSP-1 type 1 repeat  
  0.000000051   40-93   TSP-1 type 1 repeat  
  0.0000000798   681-736   TSP-1 type 1 repeat  
  0.00000118   432-481   TSP-1 type 1 repeat  
  0.00000602   605-655   TSP-1 type 1 repeat  
  0.0000068   356-426   TSP-1 type 1 repeat  
  0.000068   171-226   TSP-1 type 1 repeat  
  0.000249   484-534   TSP-1 type 1 repeat  
  0.000288   225-299   TSP-1 type 1 repeat  
ENSMUSP00000112524   0.00000000000124   301-347   TSP-1 type 1 repeat  
  0.000000000262   411-458   TSP-1 type 1 repeat  
  0.000000000314   352-407   TSP-1 type 1 repeat  
ENSMUSP00000112536   0.00000000000000301   822-878   TSP-1 type 1 repeat  
  0.00000000000000667   606-656   TSP-1 type 1 repeat  
  0.000000000000419   878-935   TSP-1 type 1 repeat  
  0.000000128   660-699   TSP-1 type 1 repeat  
  0.000144   936-980   TSP-1 type 1 repeat  
  0.000222   551-603   TSP-1 type 1 repeat  
ENSMUSP00000112723   0.00000000000000719   542-592   TSP-1 type 1 repeat  
  0.000000000693   961-1011   TSP-1 type 1 repeat  
  0.0000000876   892-958   TSP-1 type 1 repeat  
  0.000000144   838-896   TSP-1 type 1 repeat  
ENSMUSP00000112869   0.000000000000379   299-348   TSP-1 type 1 repeat  
  0.000000000275   411-458   TSP-1 type 1 repeat  
  0.000000000432   352-407   TSP-1 type 1 repeat  
ENSMUSP00000113330   0.00000000103   33-81   TSP-1 type 1 repeat  
ENSMUSP00000113424   0.000000000667   874-932   TSP-1 type 1 repeat  
  0.00000000183   43-74   TSP-1 type 1 repeat  
  0.00000000314   689-747   TSP-1 type 1 repeat  
  0.00000000706   938-987   TSP-1 type 1 repeat  
  0.00000000981   748-805   TSP-1 type 1 repeat  
  0.000000837   809-870   TSP-1 type 1 repeat  
  0.000366   635-687   TSP-1 type 1 repeat  
ENSMUSP00000113681   0.000000000000628   183-230   TSP-1 type 1 repeat  
  0.00000000000772   619-683   TSP-1 type 1 repeat  
  0.00000000000798   1270-1327   TSP-1 type 1 repeat  
  0.00000000196   1020-1077   TSP-1 type 1 repeat  
  0.0000000693   349-402   TSP-1 type 1 repeat  
  0.000000103   760-813   TSP-1 type 1 repeat  
  0.000000157   1401-1456   TSP-1 type 1 repeat  
  0.000000249   686-755   TSP-1 type 1 repeat  
  0.00000235   1152-1201   TSP-1 type 1 repeat  
  0.0000144   1326-1375   TSP-1 type 1 repeat  
  0.0000314   1076-1147   TSP-1 type 1 repeat  
  0.000103   891-946   TSP-1 type 1 repeat  
  0.000144   413-484   TSP-1 type 1 repeat  
  0.00051   1204-1254   TSP-1 type 1 repeat  
  0.000798   953-1019   TSP-1 type 1 repeat  
  0.00131   497-562   TSP-1 type 1 repeat  
  0.0497   105-178   TSP-1 type 1 repeat  
  0.0746   579-607   TSP-1 type 1 repeat  
ENSMUSP00000113780   0.00000000602   11-64   TSP-1 type 1 repeat  
  0.00000811   75-156   TSP-1 type 1 repeat  
  0.000288   159-224   TSP-1 type 1 repeat  
ENSMUSP00000113806   0.00000000000392   305-361   TSP-1 type 1 repeat  
  0.0000000000183   387-447   TSP-1 type 1 repeat  
  0.0000000000301   28-77   TSP-1 type 1 repeat  
  0.000000000183   445-503   TSP-1 type 1 repeat  
  0.000000000235   507-561   TSP-1 type 1 repeat  
ENSMUSP00000115969   9.02e-16   201-257   TSP-1 type 1 repeat  
  0.00000000000000183   14-64   TSP-1 type 1 repeat  
  0.000000000000124   257-314   TSP-1 type 1 repeat  
  0.0000000000262   68-120   TSP-1 type 1 repeat  
  0.0000157   314-358   TSP-1 type 1 repeat  
ENSMUSP00000115972   0.000000000000109   521-577   TSP-1 type 1 repeat  
  0.00000000118   1439-1498   TSP-1 type 1 repeat  
  0.0000000126   805-862   TSP-1 type 1 repeat  
  0.0000000196   1331-1391   TSP-1 type 1 repeat  
  0.000000105   1279-1333   TSP-1 type 1 repeat  
  0.000000183   1390-1440   TSP-1 type 1 repeat  
  0.00000288   860-922   TSP-1 type 1 repeat  
ENSMUSP00000116231   0.0000000000000523   342-397   TSP-1 type 1 repeat  
  0.00000000000051   397-452   TSP-1 type 1 repeat  
  0.00000000000549   294-337   TSP-1 type 1 repeat  
  0.00000000209   452-507   TSP-1 type 1 repeat  
ENSMUSP00000116585   0.00000017   14-51   TSP-1 type 1 repeat  
ENSMUSP00000116759   0.0000000000000432   135-190   TSP-1 type 1 repeat  
  0.000000000000419   190-245   TSP-1 type 1 repeat  
  0.00000000000445   87-130   TSP-1 type 1 repeat  
  0.0000000017   245-300   TSP-1 type 1 repeat  
ENSMUSP00000117108   0.00000131   247-286   TSP-1 type 1 repeat  
ENSMUSP00000117487   0.0000000000000379   185-236   TSP-1 type 1 repeat  
  0.00000000209   239-293   TSP-1 type 1 repeat  
ENSMUSP00000117750   0.0000000000536   102-149   TSP-1 type 1 repeat  
  0.00000000196   259-312   TSP-1 type 1 repeat  
  0.000107   25-97   TSP-1 type 1 repeat  
  0.00968   320-370   TSP-1 type 1 repeat  
ENSMUSP00000118212   0.0000000000000419   259-310   TSP-1 type 1 repeat  
  0.00000000235   313-367   TSP-1 type 1 repeat  
ENSMUSP00000118471   1.7e-16   294-351   TSP-1 type 1 repeat  
  0.000000000667   593-647   TSP-1 type 1 repeat  
  0.00000000379   646-677   TSP-1 type 1 repeat  
ENSMUSP00000119278   0.000000000262   758-824   TSP-1 type 1 repeat  
  0.000000000353   1523-1590   TSP-1 type 1 repeat  
  0.00000000128   432-492   TSP-1 type 1 repeat  
  0.00000000824   529-583   TSP-1 type 1 repeat  
  0.0000000106   376-437   TSP-1 type 1 repeat  
  0.0000000196   33-81   TSP-1 type 1 repeat  
  0.00000017   610-666   TSP-1 type 1 repeat  
  0.000000275   296-359   TSP-1 type 1 repeat  
  0.000000288   1652-1708   TSP-1 type 1 repeat  
  0.000000575   701-763   TSP-1 type 1 repeat  
  0.000235   1590-1649   TSP-1 type 1 repeat  
  0.00102   1469-1528   TSP-1 type 1 repeat  
ENSMUSP00000119804   0.0000000000000523   342-397   TSP-1 type 1 repeat  
  0.00000000000051   397-452   TSP-1 type 1 repeat  
  0.00000000000549   294-337   TSP-1 type 1 repeat  
  0.00000000209   452-507   TSP-1 type 1 repeat  
ENSMUSP00000120844   0.00000706   48-69   TSP-1 type 1 repeat  
ENSMUSP00000121500   0.00000000000000144   4638-4696   TSP-1 type 1 repeat  
  0.00000000000000209   4582-4639   TSP-1 type 1 repeat  
  0.000000000000017   4527-4578   TSP-1 type 1 repeat  
  0.0000000000000183   4810-4867   TSP-1 type 1 repeat  
  0.0000000000000523   4696-4753   TSP-1 type 1 repeat  
  0.0000000000000876   4752-4810   TSP-1 type 1 repeat  
ENSMUSP00000121696   0.0000000000000523   551-607   TSP-1 type 1 repeat  
  0.00000000000131   1200-1259   TSP-1 type 1 repeat  
  0.0000000000994   1073-1130   TSP-1 type 1 repeat  
  0.000000000144   1354-1410   TSP-1 type 1 repeat  
  0.000000000405   1013-1073   TSP-1 type 1 repeat  
  0.00000000288   956-1018   TSP-1 type 1 repeat  
  0.00000000889   1300-1355   TSP-1 type 1 repeat  
  0.00000000981   1150-1201   TSP-1 type 1 repeat  
  0.0000126   846-898   TSP-1 type 1 repeat  
  0.00549   908-958   TSP-1 type 1 repeat  
ENSMUSP00000121703   0.000000068   2-31   TSP-1 type 1 repeat  
  0.00000536   29-77   TSP-1 type 1 repeat  
ENSMUSP00000121836   0.0000115   197-226   TSP-1 type 1 repeat  
ENSMUSP00000122031   7.72e-16   581-638   TSP-1 type 1 repeat  
ENSMUSP00000123323   0.00000000484   54-88   TSP-1 type 1 repeat  
ENSMUSP00000123343   0.0000000379   183-232   TSP-1 type 1 repeat  
  0.0000000405   125-188   TSP-1 type 1 repeat  
ENSMUSP00000124417   0.00000000536   24-78   TSP-1 type 1 repeat  
  0.00000000706   564-612   TSP-1 type 1 repeat  
  0.00000732   80-128   TSP-1 type 1 repeat  
ENSMUSP00000125358   0.00000000109   24-78   TSP-1 type 1 repeat  
  0.00000157   80-128   TSP-1 type 1 repeat  
ENSMUSP00000125693   0.0000000068   24-78   TSP-1 type 1 repeat  
  0.00000000889   564-612   TSP-1 type 1 repeat  
  0.00000929   80-128   TSP-1 type 1 repeat  
ENSMUSP00000126498   0.000000000000222   6-61   TSP-1 type 1 repeat  
  0.0000000000262   601-658   TSP-1 type 1 repeat  
  0.0000000000432   526-584   TSP-1 type 1 repeat  
  0.0000000000732   795-854   TSP-1 type 1 repeat  
  0.00000000157   467-527   TSP-1 type 1 repeat  
  0.00000000235   653-714   TSP-1 type 1 repeat  
  0.00000000288   968-1027   TSP-1 type 1 repeat  
  0.00000000419   411-472   TSP-1 type 1 repeat  
  0.00000000536   1094-1142   TSP-1 type 1 repeat  
  0.00000000575   1030-1090   TSP-1 type 1 repeat  
  0.00000000615   742-798   TSP-1 type 1 repeat  
  0.0000000114   859-913   TSP-1 type 1 repeat  
  0.0000000772   911-969   TSP-1 type 1 repeat  
  0.0000719   296-351   TSP-1 type 1 repeat  
  0.00523   357-412   TSP-1 type 1 repeat  
ENSMUSP00000128308   2.49e-16   493-544   TSP-1 type 1 repeat  
  0.00000000000000955   436-491   TSP-1 type 1 repeat  
  0.000000000419   381-425   TSP-1 type 1 repeat  
ENSMUSP00000128521   0.0000000000000366   249-299   TSP-1 type 1 repeat  
  0.00000000144   305-352   TSP-1 type 1 repeat  
ENSMUSP00000129292   0.000000000000115   521-577   TSP-1 type 1 repeat  
  0.000000000196   925-977   TSP-1 type 1 repeat  
  0.00000000124   1540-1599   TSP-1 type 1 repeat  
  0.0000000131   805-862   TSP-1 type 1 repeat  
  0.0000000209   1432-1492   TSP-1 type 1 repeat  
  0.000000111   1380-1434   TSP-1 type 1 repeat  
  0.000000196   1491-1541   TSP-1 type 1 repeat  
  0.00000445   860-922   TSP-1 type 1 repeat  
ENSMUSP00000131401   1.83e-16   2533-2590   TSP-1 type 1 repeat  
  0.000000000000615   3991-4048   TSP-1 type 1 repeat  
  0.000000000000863   3230-3287   TSP-1 type 1 repeat  
  0.00000000000102   2696-2747   TSP-1 type 1 repeat  
  0.00000000000131   2962-3019   TSP-1 type 1 repeat  
  0.00000000000157   4243-4292   TSP-1 type 1 repeat  
  0.00000000000693   2807-2863   TSP-1 type 1 repeat  
  0.0000000000128   3799-3851   TSP-1 type 1 repeat  
  0.0000000000654   3626-3670   TSP-1 type 1 repeat  
  0.000000000458   3934-3991   TSP-1 type 1 repeat  
  0.00000000327   4760-4811   TSP-1 type 1 repeat  
  0.00000000824   3452-3500   TSP-1 type 1 repeat  
  0.00000000863   1697-1747   TSP-1 type 1 repeat  
  0.00000000955   3164-3230   TSP-1 type 1 repeat  
  0.000000017   2480-2533   TSP-1 type 1 repeat  
  0.0000000301   3385-3444   TSP-1 type 1 repeat  
  0.0000000405   4605-4658   TSP-1 type 1 repeat  
  0.0000000536   1752-1791   TSP-1 type 1 repeat  
  0.0000017   4147-4201   TSP-1 type 1 repeat  
  0.00000314   3871-3918   TSP-1 type 1 repeat  
  0.00000366   2755-2803   TSP-1 type 1 repeat  
  0.0000144   4305-4355   TSP-1 type 1 repeat  
  0.0000183   3024-3063   TSP-1 type 1 repeat  
  0.0000981   1909-1967   TSP-1 type 1 repeat  
  0.000301   4358-4407   TSP-1 type 1 repeat  
ENSMUSP00000131418   0.0000000000746   855-912   TSP-1 type 1 repeat  
  0.000000000222   916-967   TSP-1 type 1 repeat  
  0.000000000262   679-736   TSP-1 type 1 repeat  
  0.000000000392   737-793   TSP-1 type 1 repeat  
  0.000000144   54-87   TSP-1 type 1 repeat  
  0.00000131   797-850   TSP-1 type 1 repeat  
  0.0000017   626-676   TSP-1 type 1 repeat  
ENSMUSP00000131662   0.000000000000641   183-230   TSP-1 type 1 repeat  
  0.00000000000772   619-683   TSP-1 type 1 repeat  
  0.00000000000798   1272-1329   TSP-1 type 1 repeat  
  0.00000000523   1020-1067   TSP-1 type 1 repeat  
  0.0000000693   349-402   TSP-1 type 1 repeat  
  0.000000103   760-813   TSP-1 type 1 repeat  
  0.000000157   1403-1458   TSP-1 type 1 repeat  
  0.000000249   686-755   TSP-1 type 1 repeat  
  0.00000235   1154-1203   TSP-1 type 1 repeat  
  0.000012   1078-1148   TSP-1 type 1 repeat  
  0.0000144   1328-1377   TSP-1 type 1 repeat  
  0.000118   891-946   TSP-1 type 1 repeat  
  0.000144   413-484   TSP-1 type 1 repeat  
  0.000536   1206-1256   TSP-1 type 1 repeat  
  0.000798   953-1019   TSP-1 type 1 repeat  
  0.00131   497-562   TSP-1 type 1 repeat  
  0.0497   105-178   TSP-1 type 1 repeat  
  0.0759   579-607   TSP-1 type 1 repeat  
ENSMUSP00000132219   0.00000000000000706   550-605   TSP-1 type 1 repeat  
  0.000000000942   970-1016   TSP-1 type 1 repeat  
  0.00000000366   908-967   TSP-1 type 1 repeat  
  0.0000000405   847-905   TSP-1 type 1 repeat  
ENSMUSP00000133337   0.0000000419   562-628   TSP-1 type 1 repeat  
  0.0000000863   686-740   TSP-1 type 1 repeat  
  0.00000085   510-567   TSP-1 type 1 repeat  
ENSMUSP00000133637   0.0000000000379   719-772   TSP-1 type 1 repeat  
  0.000000000196   431-491   TSP-1 type 1 repeat  
  0.00000000262   486-546   TSP-1 type 1 repeat  
  0.00000000366   583-637   TSP-1 type 1 repeat  
  0.0000000209   87-135   TSP-1 type 1 repeat  
  0.0000000327   772-832   TSP-1 type 1 repeat  
  0.000000114   1492-1558   TSP-1 type 1 repeat  
  0.000000144   829-893   TSP-1 type 1 repeat  
  0.000000235   1616-1670   TSP-1 type 1 repeat  
  0.00000235   1440-1497   TSP-1 type 1 repeat  
  0.00000405   353-413   TSP-1 type 1 repeat  
  0.00000405   661-716   TSP-1 type 1 repeat  
ENSMUSP00000135147   0.00000122   196-241   TSP-1 type 1 repeat  
ENSMUSP00000139280   0.00000112   218-258   TSP-1 type 1 repeat  
ENSMUSP00000139484   0.0000000000000876   22-79   TSP-1 type 1 repeat  
  0.000000000000235   274-323   TSP-1 type 1 repeat  
  0.00000000249   791-842   TSP-1 type 1 repeat  
  0.00000000575   636-689   TSP-1 type 1 repeat  
  0.000000249   178-232   TSP-1 type 1 repeat  
  0.00000235   336-386   TSP-1 type 1 repeat  
  0.0000432   389-438   TSP-1 type 1 repeat  
ENSMUSP00000140362   0.0000000000000275   405-461   TSP-1 type 1 repeat  
  0.000000000000798   466-516   TSP-1 type 1 repeat  
  0.00000000000183   519-574   TSP-1 type 1 repeat  
  0.0000000000222   353-402   TSP-1 type 1 repeat  
  0.000000000115   262-314   TSP-1 type 1 repeat  
ENSMUSP00000140642   0.00000000012   103-154   TSP-1 type 1 repeat  
ENSMUSP00000140713   0.0000000000000157   54-109   TSP-1 type 1 repeat  
  0.000000000000017   2-50   TSP-1 type 1 repeat  
  0.000000000000222   109-164   TSP-1 type 1 repeat  
ENSMUSP00000140959   0.0000000000288   262-314   TSP-1 type 1 repeat  
 
Weak hits:
ENSMUSP00000041578   0.0034   138-190   TSP-1 type 1 repeat  
ENSMUSP00000057020   0.00051   139-183   TSP-1 type 1 repeat  
ENSMUSP00000088324   0.0523   214-262   TSP-1 type 1 repeat  
ENSMUSP00000097938   0.0654   172-202   TSP-1 type 1 repeat  

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Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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