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  Home > Genomes > Latimeria chalumnae 76_1 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Latimeria chalumnae 76_1

Assignment details

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Latimeria chalumnae 76_1 has 302 significant domains in 94 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLACP00000000365   0.0000000000000432   536-592   TSP-1 type 1 repeat  
  0.00000000000419   1133-1190   TSP-1 type 1 repeat  
  0.00000000000719   1342-1398   TSP-1 type 1 repeat  
  0.000000000811   942-1003   TSP-1 type 1 repeat  
  0.000000000876   1401-1457   TSP-1 type 1 repeat  
  0.00000000105   1188-1246   TSP-1 type 1 repeat  
  0.00000000119   1574-1634   TSP-1 type 1 repeat  
  0.00000000131   1056-1115   TSP-1 type 1 repeat  
  0.00000000235   1508-1571   TSP-1 type 1 repeat  
  0.00000000523   1640-1687   TSP-1 type 1 repeat  
  0.00000000811   1289-1342   TSP-1 type 1 repeat  
  0.0000000105   1003-1058   TSP-1 type 1 repeat  
  0.0000000667   1455-1513   TSP-1 type 1 repeat  
  0.0000981   829-883   TSP-1 type 1 repeat  
  0.0654   889-943   TSP-1 type 1 repeat  
ENSLACP00000000493   0.00000249   193-237   TSP-1 type 1 repeat  
ENSLACP00000000511   0.000000000667   468-516   TSP-1 type 1 repeat  
ENSLACP00000000631   0.00000000000235   485-540   TSP-1 type 1 repeat  
  0.0000000000107   542-590   TSP-1 type 1 repeat  
  0.000000000017   432-485   TSP-1 type 1 repeat  
  0.0000000327   628-682   TSP-1 type 1 repeat  
  0.00000144   330-376   TSP-1 type 1 repeat  
ENSLACP00000000632   0.00000000000129   425-477   TSP-1 type 1 repeat  
  0.0000000000209   477-532   TSP-1 type 1 repeat  
  0.0000000288   565-619   TSP-1 type 1 repeat  
  0.00000126   330-376   TSP-1 type 1 repeat  
ENSLACP00000001383   0.00000183   227-272   TSP-1 type 1 repeat  
ENSLACP00000001792   0.0000000000379   18-76   TSP-1 type 1 repeat  
  0.00000000157   822-880   TSP-1 type 1 repeat  
  0.00000000392   591-658   TSP-1 type 1 repeat  
  0.0000000589   713-767   TSP-1 type 1 repeat  
  0.000000405   762-827   TSP-1 type 1 repeat  
  0.00000116   659-710   TSP-1 type 1 repeat  
  0.0000131   537-595   TSP-1 type 1 repeat  
ENSLACP00000001832   0.000000000183   1079-1129   TSP-1 type 1 repeat  
  0.00000000157   938-996   TSP-1 type 1 repeat  
  0.00000000327   878-935   TSP-1 type 1 repeat  
  0.0000000157   1001-1063   TSP-1 type 1 repeat  
  0.000127   827-875   TSP-1 type 1 repeat  
  0.0628   555-587   TSP-1 type 1 repeat  
ENSLACP00000001895   0.0000000000183   410-467   TSP-1 type 1 repeat  
  0.000000000746   161-218   TSP-1 type 1 repeat  
  0.00000068   293-342   TSP-1 type 1 repeat  
  0.000000798   537-601   TSP-1 type 1 repeat  
  0.00000837   466-515   TSP-1 type 1 repeat  
  0.0000144   33-88   TSP-1 type 1 repeat  
  0.0000942   343-400   TSP-1 type 1 repeat  
  0.000119   217-288   TSP-1 type 1 repeat  
  0.00959   97-160   TSP-1 type 1 repeat  
ENSLACP00000001896   0.0000000000144   261-318   TSP-1 type 1 repeat  
  0.000000000889   10-69   TSP-1 type 1 repeat  
  0.000000523   144-193   TSP-1 type 1 repeat  
  0.000000602   388-452   TSP-1 type 1 repeat  
  0.00000641   317-366   TSP-1 type 1 repeat  
  0.0000275   68-138   TSP-1 type 1 repeat  
  0.0000746   194-251   TSP-1 type 1 repeat  
ENSLACP00000002282   7.46e-16   524-580   TSP-1 type 1 repeat  
ENSLACP00000002283   7.32e-16   508-564   TSP-1 type 1 repeat  
ENSLACP00000003003   0.00000000366   198-245   TSP-1 type 1 repeat  
ENSLACP00000003063   5.75e-16   496-553   TSP-1 type 1 repeat  
  0.0000000000000196   441-496   TSP-1 type 1 repeat  
  0.000000000314   387-430   TSP-1 type 1 repeat  
ENSLACP00000003199   0.0000275   234-277   TSP-1 type 1 repeat  
ENSLACP00000003558   0.00000000000000654   334-389   TSP-1 type 1 repeat  
  0.0000000000105   282-330   TSP-1 type 1 repeat  
  0.000000000051   388-444   TSP-1 type 1 repeat  
  0.0000000000693   448-496   TSP-1 type 1 repeat  
ENSLACP00000003769   0.00000000732   102-161   TSP-1 type 1 repeat  
ENSLACP00000004239   0.0000000000235   102-151   TSP-1 type 1 repeat  
  0.00000000144   264-318   TSP-1 type 1 repeat  
  0.0000523   325-378   TSP-1 type 1 repeat  
  0.000471   24-97   TSP-1 type 1 repeat  
ENSLACP00000006198   0.0000000000000196   132-181   TSP-1 type 1 repeat  
  0.000000000131   252-307   TSP-1 type 1 repeat  
  0.00000000123   185-248   TSP-1 type 1 repeat  
  0.0000000209   76-127   TSP-1 type 1 repeat  
  0.0000123   311-373   TSP-1 type 1 repeat  
ENSLACP00000006218   0.0000000327   79-126   TSP-1 type 1 repeat  
ENSLACP00000006452   0.0000000000196   23-72   TSP-1 type 1 repeat  
ENSLACP00000007109   0.0000068   126-177   TSP-1 type 1 repeat  
ENSLACP00000007268   0.0000000000000628   62-112   TSP-1 type 1 repeat  
  0.00000000115   116-170   TSP-1 type 1 repeat  
ENSLACP00000007361   0.0000116   197-241   TSP-1 type 1 repeat  
ENSLACP00000007393   0.0000000157   338-383   TSP-1 type 1 repeat  
ENSLACP00000007778   0.00000000000000706   4556-4614   TSP-1 type 1 repeat  
  0.000000000000051   4501-4557   TSP-1 type 1 repeat  
  0.00000000000011   4776-4831   TSP-1 type 1 repeat  
  0.000000000000275   4614-4671   TSP-1 type 1 repeat  
ENSLACP00000007807   0.00000916   195-238   TSP-1 type 1 repeat  
ENSLACP00000008421   0.00000000183   1-48   TSP-1 type 1 repeat  
ENSLACP00000009172   0.000000000034   83-131   TSP-1 type 1 repeat  
ENSLACP00000009386   0.0000000000693   748-805   TSP-1 type 1 repeat  
  0.000000000366   43-79   TSP-1 type 1 repeat  
  0.000000000432   924-981   TSP-1 type 1 repeat  
  0.0000000017   984-1036   TSP-1 type 1 repeat  
  0.00000000575   806-862   TSP-1 type 1 repeat  
  0.000000183   865-919   TSP-1 type 1 repeat  
  0.00000144   693-745   TSP-1 type 1 repeat  
ENSLACP00000009568   0.000000000000589   615-671   TSP-1 type 1 repeat  
  0.000000000051   161-209   TSP-1 type 1 repeat  
  0.00000000628   508-564   TSP-1 type 1 repeat  
  0.0000000275   443-504   TSP-1 type 1 repeat  
  0.000000419   567-611   TSP-1 type 1 repeat  
ENSLACP00000009679   0.000000101   145-200   TSP-1 type 1 repeat  
ENSLACP00000009899   0.000000000000114   556-611   TSP-1 type 1 repeat  
  0.00000000275   898-954   TSP-1 type 1 repeat  
  0.0000000432   836-894   TSP-1 type 1 repeat  
  0.000000157   1009-1064   TSP-1 type 1 repeat  
  0.000000929   958-1012   TSP-1 type 1 repeat  
ENSLACP00000009975   0.0000000000000183   245-295   TSP-1 type 1 repeat  
  0.000000000405   299-353   TSP-1 type 1 repeat  
ENSLACP00000010046   0.000000000000011   217-268   TSP-1 type 1 repeat  
ENSLACP00000010295   0.00000314   204-249   TSP-1 type 1 repeat  
ENSLACP00000010381   0.00000000641   46-103   TSP-1 type 1 repeat  
  0.00000000798   747-801   TSP-1 type 1 repeat  
  0.000000012   624-692   TSP-1 type 1 repeat  
  0.00000262   865-908   TSP-1 type 1 repeat  
  0.00000732   571-629   TSP-1 type 1 repeat  
  0.0000262   694-744   TSP-1 type 1 repeat  
ENSLACP00000010592   0.00000000000144   306-364   TSP-1 type 1 repeat  
  0.00000000000366   32-83   TSP-1 type 1 repeat  
  0.0000000000693   453-511   TSP-1 type 1 repeat  
  0.00000000183   393-454   TSP-1 type 1 repeat  
ENSLACP00000010593   0.00000000000144   282-340   TSP-1 type 1 repeat  
  0.00000000000366   8-59   TSP-1 type 1 repeat  
  0.000000000157   400-461   TSP-1 type 1 repeat  
  0.000000000785   346-404   TSP-1 type 1 repeat  
ENSLACP00000011088   0.00000000000000366   90-145   TSP-1 type 1 repeat  
  0.0000000000000785   145-200   TSP-1 type 1 repeat  
  0.00000000000196   39-86   TSP-1 type 1 repeat  
  0.0000000000523   200-255   TSP-1 type 1 repeat  
ENSLACP00000012623   0.0000000000000405   357-412   TSP-1 type 1 repeat  
  0.00000000183   775-824   TSP-1 type 1 repeat  
  0.0000000112   653-711   TSP-1 type 1 repeat  
  0.0000000379   716-775   TSP-1 type 1 repeat  
ENSLACP00000012695   0.000000000000602   556-612   TSP-1 type 1 repeat  
  0.0000000000017   905-961   TSP-1 type 1 repeat  
  0.0000000051   1019-1071   TSP-1 type 1 repeat  
  0.0000000379   845-901   TSP-1 type 1 repeat  
  0.00000112   964-1019   TSP-1 type 1 repeat  
ENSLACP00000013207   0.000000484   211-255   TSP-1 type 1 repeat  
ENSLACP00000013208   0.000000929   215-263   TSP-1 type 1 repeat  
ENSLACP00000013246   0.00000000209   1730-1779   TSP-1 type 1 repeat  
  0.000157   1783-1812   TSP-1 type 1 repeat  
ENSLACP00000013489   0.000000000000017   308-364   TSP-1 type 1 repeat  
  0.00000000144   988-1052   TSP-1 type 1 repeat  
  0.0000000116   869-934   TSP-1 type 1 repeat  
  0.000000183   663-728   TSP-1 type 1 repeat  
  0.00000602   733-788   TSP-1 type 1 repeat  
  0.00000785   938-994   TSP-1 type 1 repeat  
  0.0000131   610-668   TSP-1 type 1 repeat  
  0.000157   823-875   TSP-1 type 1 repeat  
ENSLACP00000013711   0.0000000000000405   200-252   TSP-1 type 1 repeat  
  0.00000000693   485-542   TSP-1 type 1 repeat  
  0.00000000719   1121-1175   TSP-1 type 1 repeat  
  0.0000000107   1063-1126   TSP-1 type 1 repeat  
  0.0000000301   540-600   TSP-1 type 1 repeat  
  0.0000000719   605-656   TSP-1 type 1 repeat  
  0.000000209   1018-1068   TSP-1 type 1 repeat  
ENSLACP00000014194   0.0000249   391-424   TSP-1 type 1 repeat  
ENSLACP00000014232   0.0000000000301   269-314   TSP-1 type 1 repeat  
ENSLACP00000014550   4.32e-16   302-360   TSP-1 type 1 repeat  
  0.00000000000000536   61-111   TSP-1 type 1 repeat  
  0.0000000000000183   248-303   TSP-1 type 1 repeat  
  0.0000000000392   115-167   TSP-1 type 1 repeat  
  0.000000288   360-406   TSP-1 type 1 repeat  
  0.000017   6-58   TSP-1 type 1 repeat  
ENSLACP00000014797   0.00000000000000379   154-209   TSP-1 type 1 repeat  
  0.0000000314   467-519   TSP-1 type 1 repeat  
ENSLACP00000014920   3.27e-16   4504-4562   TSP-1 type 1 repeat  
  0.00000000000000183   4619-4676   TSP-1 type 1 repeat  
  0.00000000000000719   4561-4619   TSP-1 type 1 repeat  
  0.0000000000000101   4449-4505   TSP-1 type 1 repeat  
  0.0000000000000471   4732-4790   TSP-1 type 1 repeat  
  0.000000000000128   4675-4733   TSP-1 type 1 repeat  
ENSLACP00000015015   0.00000000000000484   518-573   TSP-1 type 1 repeat  
  0.0000000000209   895-955   TSP-1 type 1 repeat  
  0.00000000994   846-896   TSP-1 type 1 repeat  
ENSLACP00000015071   8.37e-16   415-465   TSP-1 type 1 repeat  
  0.0000000000000012   258-309   TSP-1 type 1 repeat  
  0.0000000000000112   202-254   TSP-1 type 1 repeat  
  0.00000000000126   473-531   TSP-1 type 1 repeat  
  0.000000000314   1-51   TSP-1 type 1 repeat  
  0.000000249   58-100   TSP-1 type 1 repeat  
ENSLACP00000015072   6.93e-16   739-797   TSP-1 type 1 repeat  
  0.00000000000000222   491-548   TSP-1 type 1 repeat  
  0.0000000000000288   296-354   TSP-1 type 1 repeat  
  0.00000000000249   126-169   TSP-1 type 1 repeat  
  0.00000000000314   1265-1314   TSP-1 type 1 repeat  
  0.0000000000101   1110-1162   TSP-1 type 1 repeat  
  0.0000000000458   796-855   TSP-1 type 1 repeat  
  0.0000000000523   432-491   TSP-1 type 1 repeat  
  0.00000000419   649-696   TSP-1 type 1 repeat  
  0.0000000968   854-908   TSP-1 type 1 repeat  
  0.000000288   371-421   TSP-1 type 1 repeat  
ENSLACP00000015073   4.19e-16   741-799   TSP-1 type 1 repeat  
  0.00000000000000144   493-550   TSP-1 type 1 repeat  
  0.0000000000000183   295-353   TSP-1 type 1 repeat  
  0.0000000000017   124-167   TSP-1 type 1 repeat  
  0.00000000000732   1112-1164   TSP-1 type 1 repeat  
  0.0000000000353   434-493   TSP-1 type 1 repeat  
  0.000000000562   798-864   TSP-1 type 1 repeat  
  0.00000000275   651-698   TSP-1 type 1 repeat  
  0.000000222   374-423   TSP-1 type 1 repeat  
ENSLACP00000015572   0.00000000000000119   508-563   TSP-1 type 1 repeat  
  0.00000000034   867-925   TSP-1 type 1 repeat  
  0.0000000109   924-973   TSP-1 type 1 repeat  
  0.0000000314   805-863   TSP-1 type 1 repeat  
ENSLACP00000015609   0.00000000000000123   528-583   TSP-1 type 1 repeat  
  0.000000000301   889-949   TSP-1 type 1 repeat  
  0.0000000017   840-892   TSP-1 type 1 repeat  
ENSLACP00000015711   0.0000000353   573-619   TSP-1 type 1 repeat  
  0.00000183   92-140   TSP-1 type 1 repeat  
ENSLACP00000015874   0.0000000000000798   489-539   TSP-1 type 1 repeat  
  0.000000000157   1526-1586   TSP-1 type 1 repeat  
  0.0000000017   894-946   TSP-1 type 1 repeat  
  0.00000000693   1416-1479   TSP-1 type 1 repeat  
  0.000000034   774-831   TSP-1 type 1 repeat  
  0.0000000916   1370-1421   TSP-1 type 1 repeat  
  0.00000017   829-890   TSP-1 type 1 repeat  
  0.00000105   1475-1528   TSP-1 type 1 repeat  
ENSLACP00000016041   0.00000000667   536-581   TSP-1 type 1 repeat  
  0.000000419   38-85   TSP-1 type 1 repeat  
ENSLACP00000016120   1.44e-16   527-583   TSP-1 type 1 repeat  
  0.00000000196   842-896   TSP-1 type 1 repeat  
  0.00000000366   891-953   TSP-1 type 1 repeat  
ENSLACP00000016519   0.000000000000157   352-408   TSP-1 type 1 repeat  
  0.0000000000109   1003-1062   TSP-1 type 1 repeat  
  0.000000000249   950-1004   TSP-1 type 1 repeat  
  0.000000000589   872-933   TSP-1 type 1 repeat  
  0.000000000719   1160-1217   TSP-1 type 1 repeat  
  0.00000000222   1223-1276   TSP-1 type 1 repeat  
  0.00000000484   1107-1161   TSP-1 type 1 repeat  
  0.00000000615   759-821   TSP-1 type 1 repeat  
  0.0000000109   816-876   TSP-1 type 1 repeat  
  0.000000017   1327-1390   TSP-1 type 1 repeat  
  0.0000000275   1460-1512   TSP-1 type 1 repeat  
  0.0000000314   1273-1332   TSP-1 type 1 repeat  
  0.0000000327   1392-1455   TSP-1 type 1 repeat  
  0.00000366   646-701   TSP-1 type 1 repeat  
ENSLACP00000016556   0.000000000144   11-61   TSP-1 type 1 repeat  
ENSLACP00000016725   0.00000157   207-252   TSP-1 type 1 repeat  
ENSLACP00000016841   0.000000183   171-210   TSP-1 type 1 repeat  
ENSLACP00000017256   0.0000000863   196-231   TSP-1 type 1 repeat  
ENSLACP00000017312   0.00000000889   279-327   TSP-1 type 1 repeat  
ENSLACP00000018343   0.0000000000000183   263-318   TSP-1 type 1 repeat  
  0.000000000549   617-676   TSP-1 type 1 repeat  
  0.00000000196   678-729   TSP-1 type 1 repeat  
  0.0000000497   555-614   TSP-1 type 1 repeat  
ENSLACP00000018598   0.000000034   76-124   TSP-1 type 1 repeat  
ENSLACP00000018903   0.00000000017   358-418   TSP-1 type 1 repeat  
  0.00000000196   646-705   TSP-1 type 1 repeat  
  0.00000000235   416-473   TSP-1 type 1 repeat  
  0.0000000034   1428-1485   TSP-1 type 1 repeat  
  0.00000000589   510-564   TSP-1 type 1 repeat  
  0.0000000222   12-60   TSP-1 type 1 repeat  
  0.000000051   706-765   TSP-1 type 1 repeat  
  0.0000000746   1608-1663   TSP-1 type 1 repeat  
  0.000000112   1480-1546   TSP-1 type 1 repeat  
  0.000000249   585-643   TSP-1 type 1 repeat  
  0.000000262   764-826   TSP-1 type 1 repeat  
  0.00000249   279-338   TSP-1 type 1 repeat  
  0.0209   1546-1605   TSP-1 type 1 repeat  
ENSLACP00000019014   0.000000314   154-207   TSP-1 type 1 repeat  
ENSLACP00000019250   0.00000536   147-201   TSP-1 type 1 repeat  
ENSLACP00000019461   0.00000000192   34-82   TSP-1 type 1 repeat  
ENSLACP00000019462   0.0000000101   25-55   TSP-1 type 1 repeat  
ENSLACP00000019463   0.0000000101   25-55   TSP-1 type 1 repeat  
ENSLACP00000019464   0.000000011   27-57   TSP-1 type 1 repeat  
ENSLACP00000019465   0.000000000144   355-415   TSP-1 type 1 repeat  
  0.000000000471   584-651   TSP-1 type 1 repeat  
  0.00000000102   452-506   TSP-1 type 1 repeat  
  0.00000000876   298-360   TSP-1 type 1 repeat  
  0.000000109   217-280   TSP-1 type 1 repeat  
  0.00000017   532-589   TSP-1 type 1 repeat  
ENSLACP00000019600   0.0000000000000051   336-386   TSP-1 type 1 repeat  
  0.0000000000301   792-849   TSP-1 type 1 repeat  
  0.0000000129   622-682   TSP-1 type 1 repeat  
  0.0000000131   686-742   TSP-1 type 1 repeat  
  0.0000000471   744-788   TSP-1 type 1 repeat  
ENSLACP00000019670   0.00000249   215-260   TSP-1 type 1 repeat  
ENSLACP00000019905   0.0000000128   49-110   TSP-1 type 1 repeat  
  0.000000811   932-991   TSP-1 type 1 repeat  
  0.0000119   1-49   TSP-1 type 1 repeat  
  0.00157   754-809   TSP-1 type 1 repeat  
ENSLACP00000019906   0.000000262   445-506   TSP-1 type 1 repeat  
  0.000719   266-321   TSP-1 type 1 repeat  
ENSLACP00000019907   0.000000458   435-499   TSP-1 type 1 repeat  
  0.000706   266-321   TSP-1 type 1 repeat  
  0.00288   381-440   TSP-1 type 1 repeat  
ENSLACP00000020712   6.67e-16   434-489   TSP-1 type 1 repeat  
  0.00000000000000654   488-546   TSP-1 type 1 repeat  
  0.0000000000392   380-425   TSP-1 type 1 repeat  
ENSLACP00000021369   0.00000000122   50-83   TSP-1 type 1 repeat  
ENSLACP00000021370   0.00000000288   20-53   TSP-1 type 1 repeat  
ENSLACP00000021371   0.000000000575   20-58   TSP-1 type 1 repeat  
ENSLACP00000021431   0.000000000126   207-264   TSP-1 type 1 repeat  
  0.000000000249   265-321   TSP-1 type 1 repeat  
  0.000000000327   382-440   TSP-1 type 1 repeat  
  0.000000000419   443-495   TSP-1 type 1 repeat  
  0.00000968   325-378   TSP-1 type 1 repeat  
  0.0000235   154-204   TSP-1 type 1 repeat  
ENSLACP00000021712   0.0000000000471   431-480   TSP-1 type 1 repeat  
  0.0000000000497   378-423   TSP-1 type 1 repeat  
  0.000000000144   487-537   TSP-1 type 1 repeat  
ENSLACP00000022478   0.00000392   77-125   TSP-1 type 1 repeat  
  0.00000471   580-623   TSP-1 type 1 repeat  
ENSLACP00000022773   0.00000000628   514-559   TSP-1 type 1 repeat  
  0.000000405   17-64   TSP-1 type 1 repeat  
ENSLACP00000023014   0.0000017   223-268   TSP-1 type 1 repeat  
ENSLACP00000023080   0.0000000000000484   540-595   TSP-1 type 1 repeat  
  0.00000000235   956-1005   TSP-1 type 1 repeat  
  0.0000000131   836-894   TSP-1 type 1 repeat  
  0.0000000484   897-956   TSP-1 type 1 repeat  
ENSLACP00000023400   0.00000275   181-226   TSP-1 type 1 repeat  
 
Weak hits:
ENSLACP00000004241   0.00667   111-141   TSP-1 type 1 repeat  
ENSLACP00000004558   0.000144   199-242   TSP-1 type 1 repeat  
ENSLACP00000015084   0.0562   47-76   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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