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  Home > Genomes > Erinaceus europaeus 76 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Erinaceus europaeus 76

Assignment details

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Erinaceus europaeus 76 has 145 significant domains in 47 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSEEUP00000000271   0.0000000000000366   414-470   TSP-1 type 1 repeat  
  0.00000000000955   936-994   TSP-1 type 1 repeat  
  0.0000000000798   1010-1068   TSP-1 type 1 repeat  
  0.000000000353   877-937   TSP-1 type 1 repeat  
  0.00000000068   1063-1124   TSP-1 type 1 repeat  
  0.00000000196   822-882   TSP-1 type 1 repeat  
  0.00000000288   1444-1504   TSP-1 type 1 repeat  
  0.00000000824   1509-1557   TSP-1 type 1 repeat  
  0.0000000144   1273-1326   TSP-1 type 1 repeat  
  0.000000772   1221-1267   TSP-1 type 1 repeat  
  0.000103   1394-1441   TSP-1 type 1 repeat  
  0.000157   706-762   TSP-1 type 1 repeat  
  0.00746   760-822   TSP-1 type 1 repeat  
ENSEEUP00000000497   0.0000000068   651-709   TSP-1 type 1 repeat  
  0.00000000942   891-942   TSP-1 type 1 repeat  
  0.00000000968   710-767   TSP-1 type 1 repeat  
  0.000017   831-887   TSP-1 type 1 repeat  
  0.00419   5-33   TSP-1 type 1 repeat  
ENSEEUP00000000625   0.00000000000017   219-269   TSP-1 type 1 repeat  
ENSEEUP00000000923   0.0000000000000288   217-268   TSP-1 type 1 repeat  
  0.00000000196   271-325   TSP-1 type 1 repeat  
ENSEEUP00000001202   0.0000000000000123   543-598   TSP-1 type 1 repeat  
  0.0000000183   826-882   TSP-1 type 1 repeat  
  0.0000000458   944-996   TSP-1 type 1 repeat  
  0.0000000693   877-940   TSP-1 type 1 repeat  
  0.0000157   1480-1529   TSP-1 type 1 repeat  
ENSEEUP00000001463   0.00000000000000994   545-595   TSP-1 type 1 repeat  
  0.000122   884-942   TSP-1 type 1 repeat  
ENSEEUP00000001648   0.00000000419   308-354   TSP-1 type 1 repeat  
ENSEEUP00000001853   0.000000471   95-135   TSP-1 type 1 repeat  
ENSEEUP00000002171   1.7e-16   580-637   TSP-1 type 1 repeat  
  0.0000000000615   1118-1171   TSP-1 type 1 repeat  
  0.00000000114   988-1043   TSP-1 type 1 repeat  
  0.0000000105   1049-1109   TSP-1 type 1 repeat  
  0.000000126   920-985   TSP-1 type 1 repeat  
  0.000222   874-925   TSP-1 type 1 repeat  
ENSEEUP00000002272   0.00000000000000589   815-866   TSP-1 type 1 repeat  
  0.000000000000196   869-926   TSP-1 type 1 repeat  
  0.0000000000615   680-732   TSP-1 type 1 repeat  
  0.0000000235   627-676   TSP-1 type 1 repeat  
  0.0000392   927-971   TSP-1 type 1 repeat  
  0.000144   572-624   TSP-1 type 1 repeat  
ENSEEUP00000002382   1.7e-16   826-884   TSP-1 type 1 repeat  
  0.00000000000000209   584-634   TSP-1 type 1 repeat  
  0.00000000000000235   772-823   TSP-1 type 1 repeat  
  0.00000000275   639-690   TSP-1 type 1 repeat  
  0.0000000183   885-930   TSP-1 type 1 repeat  
  0.0000157   529-581   TSP-1 type 1 repeat  
ENSEEUP00000002560   0.000000379   5-52   TSP-1 type 1 repeat  
ENSEEUP00000002969   0.0000126   142-194   TSP-1 type 1 repeat  
ENSEEUP00000003074   0.000000000484   543-588   TSP-1 type 1 repeat  
ENSEEUP00000003101   0.000000000128   545-590   TSP-1 type 1 repeat  
  0.0000144   63-111   TSP-1 type 1 repeat  
ENSEEUP00000003553   0.0000000000000327   143-199   TSP-1 type 1 repeat  
  0.000000000000327   256-311   TSP-1 type 1 repeat  
  0.000000000000536   202-256   TSP-1 type 1 repeat  
  0.0000000000262   91-140   TSP-1 type 1 repeat  
  0.000000000353   2-48   TSP-1 type 1 repeat  
ENSEEUP00000003802   0.0000000000523   411-476   TSP-1 type 1 repeat  
  0.0000000366   538-594   TSP-1 type 1 repeat  
  0.000103   476-535   TSP-1 type 1 repeat  
  0.017   357-416   TSP-1 type 1 repeat  
ENSEEUP00000003828   0.0000000000000118   500-556   TSP-1 type 1 repeat  
ENSEEUP00000003979   0.0000000085   113-168   TSP-1 type 1 repeat  
ENSEEUP00000004897   5.75e-17   203-255   TSP-1 type 1 repeat  
  3.14e-16   147-196   TSP-1 type 1 repeat  
  0.0000000000235   91-140   TSP-1 type 1 repeat  
ENSEEUP00000005092   0.0000111   201-244   TSP-1 type 1 repeat  
ENSEEUP00000005697   0.00000000615   562-610   TSP-1 type 1 repeat  
  0.000144   24-49   TSP-1 type 1 repeat  
ENSEEUP00000006130   0.00000000000000968   513-569   TSP-1 type 1 repeat  
  0.000000000811   891-951   TSP-1 type 1 repeat  
  0.0000000222   848-892   TSP-1 type 1 repeat  
ENSEEUP00000006227   1.7e-16   304-360   TSP-1 type 1 repeat  
  0.0000000000497   614-667   TSP-1 type 1 repeat  
ENSEEUP00000006762   0.00000000183   316-348   TSP-1 type 1 repeat  
  0.0000000116   638-695   TSP-1 type 1 repeat  
  0.00000131   757-802   TSP-1 type 1 repeat  
ENSEEUP00000007532   0.00000000432   1-48   TSP-1 type 1 repeat  
ENSEEUP00000007545   0.0000000000000575   341-396   TSP-1 type 1 repeat  
  0.0000000000085   293-336   TSP-1 type 1 repeat  
ENSEEUP00000008615   0.0000589   217-262   TSP-1 type 1 repeat  
ENSEEUP00000008717   0.00000314   222-265   TSP-1 type 1 repeat  
ENSEEUP00000009077   0.000000000000034   199-253   TSP-1 type 1 repeat  
  0.0000000432   509-562   TSP-1 type 1 repeat  
ENSEEUP00000009091   0.000000000196   342-392   TSP-1 type 1 repeat  
ENSEEUP00000009116   0.00000000000471   439-495   TSP-1 type 1 repeat  
  0.0000000000085   552-600   TSP-1 type 1 repeat  
  0.000000000746   386-436   TSP-1 type 1 repeat  
  0.000000103   495-529   TSP-1 type 1 repeat  
  0.000000536   328-374   TSP-1 type 1 repeat  
ENSEEUP00000009277   0.000000157   808-864   TSP-1 type 1 repeat  
  0.00017   532-566   TSP-1 type 1 repeat  
ENSEEUP00000010293   0.000000000000693   524-575   TSP-1 type 1 repeat  
  0.000000000115   808-865   TSP-1 type 1 repeat  
  0.00000000196   869-925   TSP-1 type 1 repeat  
  0.00000366   928-983   TSP-1 type 1 repeat  
ENSEEUP00000011140   0.000000000000116   317-373   TSP-1 type 1 repeat  
  0.000000863   815-879   TSP-1 type 1 repeat  
  0.000111   950-997   TSP-1 type 1 repeat  
  0.0119   771-820   TSP-1 type 1 repeat  
  0.0432   616-675   TSP-1 type 1 repeat  
ENSEEUP00000011597   5.36e-17   492-544   TSP-1 type 1 repeat  
  2.88e-16   436-485   TSP-1 type 1 repeat  
  0.0000000000222   380-429   TSP-1 type 1 repeat  
ENSEEUP00000011934   0.00000000000114   485-541   TSP-1 type 1 repeat  
  0.0000000000314   1003-1064   TSP-1 type 1 repeat  
  0.0000000000392   1134-1193   TSP-1 type 1 repeat  
  0.00000000484   1084-1136   TSP-1 type 1 repeat  
  0.000000327   1396-1455   TSP-1 type 1 repeat  
  0.000000497   950-981   TSP-1 type 1 repeat  
  0.00000471   777-831   TSP-1 type 1 repeat  
  0.000034   906-951   TSP-1 type 1 repeat  
  0.0000353   1353-1399   TSP-1 type 1 repeat  
  0.000105   1450-1513   TSP-1 type 1 repeat  
ENSEEUP00000012113   0.00000000000000249   548-603   TSP-1 type 1 repeat  
  0.0000000119   844-902   TSP-1 type 1 repeat  
  0.0000157   975-1013   TSP-1 type 1 repeat  
ENSEEUP00000012229   0.000000000405   432-492   TSP-1 type 1 repeat  
  0.00000000249   376-437   TSP-1 type 1 repeat  
  0.0000000127   32-77   TSP-1 type 1 repeat  
  0.0000000183   529-583   TSP-1 type 1 repeat  
  0.0000000772   296-359   TSP-1 type 1 repeat  
  0.000000379   610-666   TSP-1 type 1 repeat  
ENSEEUP00000012367   0.000000000183   61-109   TSP-1 type 1 repeat  
  0.00000000122   2-56   TSP-1 type 1 repeat  
  0.00000000719   115-171   TSP-1 type 1 repeat  
  0.0000000196   234-295   TSP-1 type 1 repeat  
  0.000000101   190-231   TSP-1 type 1 repeat  
  0.00000131   303-337   TSP-1 type 1 repeat  
ENSEEUP00000012387   0.0000000000366   35-91   TSP-1 type 1 repeat  
  0.0000000602   1257-1312   TSP-1 type 1 repeat  
  0.0000000615   536-611   TSP-1 type 1 repeat  
  0.000000085   616-669   TSP-1 type 1 repeat  
  0.0000484   747-802   TSP-1 type 1 repeat  
  0.0000746   1126-1147   TSP-1 type 1 repeat  
  0.000249   1061-1116   TSP-1 type 1 repeat  
  0.00034   1012-1058   TSP-1 type 1 repeat  
  0.000523   353-418   TSP-1 type 1 repeat  
ENSEEUP00000012493   0.0000000000157   320-367   TSP-1 type 1 repeat  
  0.000000000106   661-720   TSP-1 type 1 repeat  
  0.00000000327   609-663   TSP-1 type 1 repeat  
ENSEEUP00000013440   0.00000000000000275   4582-4640   TSP-1 type 1 repeat  
  0.000000000000017   4640-4697   TSP-1 type 1 repeat  
  0.0000000000000196   4470-4526   TSP-1 type 1 repeat  
  0.0000000000000301   4525-4583   TSP-1 type 1 repeat  
  0.0000000000000929   4754-4811   TSP-1 type 1 repeat  
  0.0000000000000942   4696-4754   TSP-1 type 1 repeat  
ENSEEUP00000013550   0.00000000000746   1080-1136   TSP-1 type 1 repeat  
  0.00000000863   973-1029   TSP-1 type 1 repeat  
  0.0000000131   907-969   TSP-1 type 1 repeat  
  0.0000000327   628-678   TSP-1 type 1 repeat  
  0.0000000523   1031-1075   TSP-1 type 1 repeat  
ENSEEUP00000013700   0.000000000051   107-154   TSP-1 type 1 repeat  
  0.000000000798   525-588   TSP-1 type 1 repeat  
  0.000000000811   883-928   TSP-1 type 1 repeat  
  0.000000183   941-1010   TSP-1 type 1 repeat  
  0.000000471   665-717   TSP-1 type 1 repeat  
  0.00000916   592-660   TSP-1 type 1 repeat  
  0.0000249   1255-1317   TSP-1 type 1 repeat  
  0.000235   329-395   TSP-1 type 1 repeat  
  0.000968   1133-1156   TSP-1 type 1 repeat  
  0.00126   31-102   TSP-1 type 1 repeat  
  0.00301   408-470   TSP-1 type 1 repeat  
ENSEEUP00000014089   0.0000000667   961-1014   TSP-1 type 1 repeat  
  0.0000759   915-962   TSP-1 type 1 repeat  
ENSEEUP00000014440   0.0000012   40-88   TSP-1 type 1 repeat  
 
Weak hits:
ENSEEUP00000007496   0.00392   272-333   TSP-1 type 1 repeat  
ENSEEUP00000009962   0.00301   140-171   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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