SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Loxodonta africana 69_3 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Loxodonta africana 69_3

Assignment details

(show help)


Loxodonta africana 69_3 has 221 significant domains in 64 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLAFP00000000907   0.000000000000222   303-361   TSP-1 type 1 repeat  
  0.0000000000405   367-425   TSP-1 type 1 repeat  
  0.0000000000445   27-76   TSP-1 type 1 repeat  
  0.000000000327   485-539   TSP-1 type 1 repeat  
  0.00000000327   425-481   TSP-1 type 1 repeat  
ENSLAFP00000000999   0.00000000772   508-575   TSP-1 type 1 repeat  
  0.0000000405   457-514   TSP-1 type 1 repeat  
  0.00000445   638-694   TSP-1 type 1 repeat  
ENSLAFP00000001053   0.00000000000000379   850-907   TSP-1 type 1 repeat  
  0.00000000000000968   664-714   TSP-1 type 1 repeat  
  0.000000000000196   907-964   TSP-1 type 1 repeat  
  0.000000000235   718-770   TSP-1 type 1 repeat  
  0.0000366   965-1009   TSP-1 type 1 repeat  
  0.000379   609-661   TSP-1 type 1 repeat  
ENSLAFP00000001421   0.000085   15-59   TSP-1 type 1 repeat  
ENSLAFP00000001483   0.00000000000118   1248-1305   TSP-1 type 1 repeat  
  0.00000000000235   157-213   TSP-1 type 1 repeat  
  0.0000000000693   597-661   TSP-1 type 1 repeat  
  0.00000000183   998-1055   TSP-1 type 1 repeat  
  0.0000000183   327-380   TSP-1 type 1 repeat  
  0.000000114   738-791   TSP-1 type 1 repeat  
  0.000000183   1375-1439   TSP-1 type 1 repeat  
  0.000000235   664-733   TSP-1 type 1 repeat  
  0.00000126   1126-1181   TSP-1 type 1 repeat  
  0.00000353   1303-1353   TSP-1 type 1 repeat  
  0.0000432   1054-1125   TSP-1 type 1 repeat  
  0.0000706   869-924   TSP-1 type 1 repeat  
  0.0000719   388-461   TSP-1 type 1 repeat  
  0.000445   1183-1239   TSP-1 type 1 repeat  
  0.00183   475-540   TSP-1 type 1 repeat  
  0.0174   930-997   TSP-1 type 1 repeat  
  0.0419   84-156   TSP-1 type 1 repeat  
  0.0706   25-78   TSP-1 type 1 repeat  
ENSLAFP00000001917   0.00000129   187-231   TSP-1 type 1 repeat  
ENSLAFP00000002137   0.00000000000314   530-585   TSP-1 type 1 repeat  
  0.0000000000106   587-635   TSP-1 type 1 repeat  
  0.0000000000209   474-530   TSP-1 type 1 repeat  
  0.00000000101   421-471   TSP-1 type 1 repeat  
  0.0000000123   674-727   TSP-1 type 1 repeat  
  0.000000641   363-409   TSP-1 type 1 repeat  
ENSLAFP00000002214   2.75e-17   490-542   TSP-1 type 1 repeat  
  6.02e-16   434-483   TSP-1 type 1 repeat  
  0.0000000000327   378-427   TSP-1 type 1 repeat  
ENSLAFP00000002373   0.0000183   191-236   TSP-1 type 1 repeat  
ENSLAFP00000002517   0.0000131   184-232   TSP-1 type 1 repeat  
ENSLAFP00000002613   0.0000000196   146-201   TSP-1 type 1 repeat  
ENSLAFP00000002740   0.00000484   40-88   TSP-1 type 1 repeat  
ENSLAFP00000002744   0.0000000000458   514-560   TSP-1 type 1 repeat  
  0.00000641   33-81   TSP-1 type 1 repeat  
ENSLAFP00000002810   0.0000000123   8-55   TSP-1 type 1 repeat  
ENSLAFP00000002816   0.00000000772   416-464   TSP-1 type 1 repeat  
ENSLAFP00000003193   1.03e-16   836-894   TSP-1 type 1 repeat  
  0.00000000000000235   782-833   TSP-1 type 1 repeat  
  0.00000000000000458   594-644   TSP-1 type 1 repeat  
  0.000000000314   649-700   TSP-1 type 1 repeat  
  0.0000000327   895-940   TSP-1 type 1 repeat  
  0.000000144   538-591   TSP-1 type 1 repeat  
ENSLAFP00000003336   0.000000000000811   253-304   TSP-1 type 1 repeat  
  0.00000000000798   132-181   TSP-1 type 1 repeat  
  0.00000000405   184-244   TSP-1 type 1 repeat  
  0.000000068   72-127   TSP-1 type 1 repeat  
  0.000000706   310-366   TSP-1 type 1 repeat  
  0.000017   376-412   TSP-1 type 1 repeat  
ENSLAFP00000003399   0.00000981   92-136   TSP-1 type 1 repeat  
ENSLAFP00000004142   0.0000000000000262   219-269   TSP-1 type 1 repeat  
  0.00000000131   275-322   TSP-1 type 1 repeat  
ENSLAFP00000004300   0.0000275   200-243   TSP-1 type 1 repeat  
ENSLAFP00000004457   0.0000000000000183   251-302   TSP-1 type 1 repeat  
  0.000000000183   304-359   TSP-1 type 1 repeat  
ENSLAFP00000004749   0.00000249   324-365   TSP-1 type 1 repeat  
ENSLAFP00000004926   0.00000000183   150-200   TSP-1 type 1 repeat  
ENSLAFP00000005130   0.00000000000000902   384-439   TSP-1 type 1 repeat  
  0.00000000902   799-852   TSP-1 type 1 repeat  
  0.0000000719   732-799   TSP-1 type 1 repeat  
  0.000000144   679-737   TSP-1 type 1 repeat  
ENSLAFP00000005398   0.000000000000314   556-612   TSP-1 type 1 repeat  
  0.000000000615   842-899   TSP-1 type 1 repeat  
  0.00000000105   903-959   TSP-1 type 1 repeat  
  0.0000000196   1017-1068   TSP-1 type 1 repeat  
  0.0000017   962-1017   TSP-1 type 1 repeat  
ENSLAFP00000005400   0.00000000000000445   531-587   TSP-1 type 1 repeat  
ENSLAFP00000007638   0.000000667   214-254   TSP-1 type 1 repeat  
ENSLAFP00000008251   0.0000000000000536   494-550   TSP-1 type 1 repeat  
  0.00000000314   1452-1511   TSP-1 type 1 repeat  
  0.00000000837   902-952   TSP-1 type 1 repeat  
  0.0000000196   1341-1404   TSP-1 type 1 repeat  
  0.0000000379   1402-1453   TSP-1 type 1 repeat  
  0.000000183   779-837   TSP-1 type 1 repeat  
  0.000000405   1294-1346   TSP-1 type 1 repeat  
  0.00000327   832-900   TSP-1 type 1 repeat  
ENSLAFP00000008364   0.0000000011   10-56   TSP-1 type 1 repeat  
ENSLAFP00000008572   0.00000000000000111   315-371   TSP-1 type 1 repeat  
  0.00000000000497   625-678   TSP-1 type 1 repeat  
ENSLAFP00000008866   0.0000000000131   176-223   TSP-1 type 1 repeat  
  0.000000000575   1243-1293   TSP-1 type 1 repeat  
  0.00000000196   993-1050   TSP-1 type 1 repeat  
  0.00000000262   594-657   TSP-1 type 1 repeat  
  0.0000000589   333-386   TSP-1 type 1 repeat  
  0.000000222   1049-1119   TSP-1 type 1 repeat  
  0.000000262   1363-1427   TSP-1 type 1 repeat  
  0.000000314   1124-1172   TSP-1 type 1 repeat  
  0.000000379   734-786   TSP-1 type 1 repeat  
  0.00000301   661-729   TSP-1 type 1 repeat  
  0.0000157   1293-1350   TSP-1 type 1 repeat  
  0.0000419   918-992   TSP-1 type 1 repeat  
  0.0000549   1176-1225   TSP-1 type 1 repeat  
  0.000222   39-91   TSP-1 type 1 repeat  
  0.000222   792-862   TSP-1 type 1 repeat  
  0.000275   394-464   TSP-1 type 1 repeat  
  0.00118   864-918   TSP-1 type 1 repeat  
  0.00144   481-534   TSP-1 type 1 repeat  
  0.00235   99-171   TSP-1 type 1 repeat  
ENSLAFP00000009269   0.000000000288   1302-1369   TSP-1 type 1 repeat  
  0.000000000366   545-611   TSP-1 type 1 repeat  
  0.00000000111   219-279   TSP-1 type 1 repeat  
  0.00000000667   163-224   TSP-1 type 1 repeat  
  0.0000000183   316-370   TSP-1 type 1 repeat  
  0.0000000667   488-550   TSP-1 type 1 repeat  
  0.000000183   1431-1487   TSP-1 type 1 repeat  
  0.000000235   83-146   TSP-1 type 1 repeat  
  0.000000772   397-453   TSP-1 type 1 repeat  
  0.00017   1369-1428   TSP-1 type 1 repeat  
  0.000301   1248-1307   TSP-1 type 1 repeat  
ENSLAFP00000009407   0.00000000000000118   422-479   TSP-1 type 1 repeat  
  0.000000000262   968-1016   TSP-1 type 1 repeat  
  0.00000000103   762-825   TSP-1 type 1 repeat  
  0.00000000288   828-886   TSP-1 type 1 repeat  
  0.000000183   892-936   TSP-1 type 1 repeat  
  0.0068   718-766   TSP-1 type 1 repeat  
ENSLAFP00000009423   0.00000000000000602   330-385   TSP-1 type 1 repeat  
  0.000000000366   747-793   TSP-1 type 1 repeat  
  0.00000000131   686-744   TSP-1 type 1 repeat  
  0.00000000955   624-682   TSP-1 type 1 repeat  
ENSLAFP00000009433   0.00000000000000968   381-437   TSP-1 type 1 repeat  
  0.0000011   1007-1068   TSP-1 type 1 repeat  
  0.00000693   683-742   TSP-1 type 1 repeat  
  0.00101   899-948   TSP-1 type 1 repeat  
  0.0589   948-979   TSP-1 type 1 repeat  
ENSLAFP00000009587   0.000000000000209   548-603   TSP-1 type 1 repeat  
  0.00000000536   897-953   TSP-1 type 1 repeat  
  0.0000000327   833-893   TSP-1 type 1 repeat  
  0.0000000379   1011-1064   TSP-1 type 1 repeat  
  0.000000106   948-1011   TSP-1 type 1 repeat  
ENSLAFP00000009614   0.000000000000445   584-640   TSP-1 type 1 repeat  
  0.00000000000549   1380-1437   TSP-1 type 1 repeat  
  0.0000000000235   1179-1237   TSP-1 type 1 repeat  
  0.0000000000863   1105-1163   TSP-1 type 1 repeat  
  0.00000000249   1551-1610   TSP-1 type 1 repeat  
  0.00000000419   1233-1293   TSP-1 type 1 repeat  
  0.00000000536   1678-1727   TSP-1 type 1 repeat  
  0.00000000549   1047-1106   TSP-1 type 1 repeat  
  0.00000000654   993-1051   TSP-1 type 1 repeat  
  0.0000000126   1325-1381   TSP-1 type 1 repeat  
  0.000000017   1442-1496   TSP-1 type 1 repeat  
  0.0000000249   1613-1673   TSP-1 type 1 repeat  
  0.000000119   1494-1552   TSP-1 type 1 repeat  
  0.000122   875-930   TSP-1 type 1 repeat  
  0.0017   929-991   TSP-1 type 1 repeat  
ENSLAFP00000009886   0.0000000000000419   90-145   TSP-1 type 1 repeat  
  0.000000000000249   145-200   TSP-1 type 1 repeat  
  0.00000000000575   42-85   TSP-1 type 1 repeat  
  0.00000000314   200-255   TSP-1 type 1 repeat  
ENSLAFP00000012256   1.26e-16   537-594   TSP-1 type 1 repeat  
  0.000000000102   1079-1129   TSP-1 type 1 repeat  
  0.00000000419   885-942   TSP-1 type 1 repeat  
  0.00000000432   945-1000   TSP-1 type 1 repeat  
  0.000000131   1006-1067   TSP-1 type 1 repeat  
  0.0000327   826-882   TSP-1 type 1 repeat  
ENSLAFP00000012614   0.000000000000288   335-387   TSP-1 type 1 repeat  
  0.0000000000314   767-823   TSP-1 type 1 repeat  
  0.000000000314   658-716   TSP-1 type 1 repeat  
  0.0000000109   719-762   TSP-1 type 1 repeat  
  0.0000000654   598-656   TSP-1 type 1 repeat  
ENSLAFP00000013089   9.02e-16   494-545   TSP-1 type 1 repeat  
  0.0000000000000314   437-492   TSP-1 type 1 repeat  
  0.000000000301   382-426   TSP-1 type 1 repeat  
ENSLAFP00000013130   3.66e-16   556-612   TSP-1 type 1 repeat  
  0.0000000000824   903-965   TSP-1 type 1 repeat  
  0.00000000196   854-908   TSP-1 type 1 repeat  
ENSLAFP00000013137   0.0000000000000183   558-612   TSP-1 type 1 repeat  
  0.000000157   868-921   TSP-1 type 1 repeat  
ENSLAFP00000013140   0.0000000419   74-121   TSP-1 type 1 repeat  
ENSLAFP00000013983   0.000000000235   845-901   TSP-1 type 1 repeat  
  0.000000000249   668-725   TSP-1 type 1 repeat  
  0.000000000275   726-782   TSP-1 type 1 repeat  
  0.0000000017   905-956   TSP-1 type 1 repeat  
  0.0000000275   45-79   TSP-1 type 1 repeat  
  0.00000128   615-665   TSP-1 type 1 repeat  
  0.0000017   786-839   TSP-1 type 1 repeat  
ENSLAFP00000014071   0.0000000000000589   384-434   TSP-1 type 1 repeat  
  0.000000000562   803-853   TSP-1 type 1 repeat  
  0.0000000811   733-800   TSP-1 type 1 repeat  
  0.00000288   680-738   TSP-1 type 1 repeat  
ENSLAFP00000014313   0.00000000000000144   323-378   TSP-1 type 1 repeat  
  0.00000000327   727-779   TSP-1 type 1 repeat  
  0.0000000955   1102-1153   TSP-1 type 1 repeat  
  0.000000235   609-665   TSP-1 type 1 repeat  
  0.000000235   661-723   TSP-1 type 1 repeat  
ENSLAFP00000015713   0.00000288   144-196   TSP-1 type 1 repeat  
ENSLAFP00000016493   0.00000628   230-274   TSP-1 type 1 repeat  
ENSLAFP00000016503   0.0000000000902   854-912   TSP-1 type 1 repeat  
  0.00000000641   624-690   TSP-1 type 1 repeat  
  0.000000017   49-106   TSP-1 type 1 repeat  
  0.0000000641   745-799   TSP-1 type 1 repeat  
  0.00000119   795-859   TSP-1 type 1 repeat  
  0.00000157   567-627   TSP-1 type 1 repeat  
  0.00017   692-742   TSP-1 type 1 repeat  
ENSLAFP00000017649   0.0000379   4-51   TSP-1 type 1 repeat  
ENSLAFP00000019457   0.00000000000536   41-92   TSP-1 type 1 repeat  
ENSLAFP00000021057   0.00000000000419   1-53   TSP-1 type 1 repeat  
ENSLAFP00000021493   0.000000000000012   514-570   TSP-1 type 1 repeat  
  0.0000000000222   839-891   TSP-1 type 1 repeat  
  0.000000000119   890-950   TSP-1 type 1 repeat  
ENSLAFP00000023441   0.000000000122   343-393   TSP-1 type 1 repeat  
ENSLAFP00000024074   0.000000000000017   369-425   TSP-1 type 1 repeat  
  0.000000000000523   431-481   TSP-1 type 1 repeat  
  0.000000000000628   484-539   TSP-1 type 1 repeat  
  0.0000000000249   317-366   TSP-1 type 1 repeat  
  0.000000275   229-266   TSP-1 type 1 repeat  
ENSLAFP00000025208   0.0000000000000419   259-310   TSP-1 type 1 repeat  
  0.00000000235   313-367   TSP-1 type 1 repeat  
ENSLAFP00000025298   0.0000000249   275-323   TSP-1 type 1 repeat  
ENSLAFP00000026869   0.000000000000523   30-90   TSP-1 type 1 repeat  
  0.000000000471   225-280   TSP-1 type 1 repeat  
  0.00000000051   163-221   TSP-1 type 1 repeat  
  0.00000000144   111-166   TSP-1 type 1 repeat  
  0.0000000183   279-336   TSP-1 type 1 repeat  
  0.0000000222   461-516   TSP-1 type 1 repeat  
  0.00000196   331-394   TSP-1 type 1 repeat  
ENSLAFP00000027260   0.000000327   225-285   TSP-1 type 1 repeat  
ENSLAFP00000027933   0.00000000103   44-78   TSP-1 type 1 repeat  
  0.00000000127   965-1026   TSP-1 type 1 repeat  
  0.00000000575   783-841   TSP-1 type 1 repeat  
  0.0000000127   725-783   TSP-1 type 1 repeat  
  0.0000000602   913-971   TSP-1 type 1 repeat  
  0.00000209   845-909   TSP-1 type 1 repeat  
  0.0000916   668-723   TSP-1 type 1 repeat  
ENSLAFP00000028268   0.00000000000000863   211-261   TSP-1 type 1 repeat  
  0.00000000101   269-317   TSP-1 type 1 repeat  
ENSLAFP00000028427   0.000000000392   70-118   TSP-1 type 1 repeat  
ENSLAFP00000029195   0.00000955   147-201   TSP-1 type 1 repeat  
 
Weak hits:
ENSLAFP00000017172   0.0262   172-205   TSP-1 type 1 repeat  
ENSLAFP00000019232   0.0217   199-247   TSP-1 type 1 repeat  
ENSLAFP00000020998   0.000101   138-190   TSP-1 type 1 repeat  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a TSP-1 type 1 repeat domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.