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  Home > Genomes > Myotis lucifugus 76_2.0 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Myotis lucifugus 76_2.0

Assignment details

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Myotis lucifugus 76_2.0 has 222 significant domains in 57 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMLUP00000000894   0.000000575   165-205   TSP-1 type 1 repeat  
ENSMLUP00000001729   0.0000000000000405   90-145   TSP-1 type 1 repeat  
  0.000000000000235   145-200   TSP-1 type 1 repeat  
  0.00000000000562   42-85   TSP-1 type 1 repeat  
  0.00000000301   200-255   TSP-1 type 1 repeat  
ENSMLUP00000002659   0.0000000000589   941-997   TSP-1 type 1 repeat  
  0.00000000183   832-888   TSP-1 type 1 repeat  
  0.0000000562   769-828   TSP-1 type 1 repeat  
  0.0000654   891-936   TSP-1 type 1 repeat  
ENSMLUP00000003163   0.000000000641   44-79   TSP-1 type 1 repeat  
  0.00000000144   969-1020   TSP-1 type 1 repeat  
  0.00000000589   777-835   TSP-1 type 1 repeat  
  0.00000000916   907-965   TSP-1 type 1 repeat  
  0.00000000929   719-777   TSP-1 type 1 repeat  
  0.00000275   839-903   TSP-1 type 1 repeat  
  0.0000798   662-717   TSP-1 type 1 repeat  
ENSMLUP00000003255   0.00000000000222   539-595   TSP-1 type 1 repeat  
  0.0000000000379   887-943   TSP-1 type 1 repeat  
  0.000000000275   826-883   TSP-1 type 1 repeat  
  0.0000000327   995-1046   TSP-1 type 1 repeat  
  0.0000144   946-993   TSP-1 type 1 repeat  
ENSMLUP00000003429   0.000000000107   34-85   TSP-1 type 1 repeat  
ENSMLUP00000003491   0.000000000772   343-393   TSP-1 type 1 repeat  
ENSMLUP00000003791   0.0000000262   146-201   TSP-1 type 1 repeat  
ENSMLUP00000004152   0.000000000000196   520-576   TSP-1 type 1 repeat  
ENSMLUP00000004233   6.15e-17   492-543   TSP-1 type 1 repeat  
  0.000000000000157   435-490   TSP-1 type 1 repeat  
  0.000000000405   381-429   TSP-1 type 1 repeat  
ENSMLUP00000004295   0.00000000000000366   41-96   TSP-1 type 1 repeat  
  0.00000000523   720-784   TSP-1 type 1 repeat  
  0.0000000772   394-460   TSP-1 type 1 repeat  
  0.0000017   661-726   TSP-1 type 1 repeat  
  0.00000405   601-666   TSP-1 type 1 repeat  
  0.00654   343-399   TSP-1 type 1 repeat  
  0.0131   556-605   TSP-1 type 1 repeat  
ENSMLUP00000004632   0.0000000000000366   215-268   TSP-1 type 1 repeat  
  0.00000000131   274-321   TSP-1 type 1 repeat  
ENSMLUP00000004745   0.000000589   124-159   TSP-1 type 1 repeat  
ENSMLUP00000004916   2.88e-17   749-807   TSP-1 type 1 repeat  
  0.00000000000000209   695-746   TSP-1 type 1 repeat  
  0.00000000000000432   507-557   TSP-1 type 1 repeat  
  0.000000000445   562-613   TSP-1 type 1 repeat  
  0.0000000288   808-853   TSP-1 type 1 repeat  
  0.000000732   451-504   TSP-1 type 1 repeat  
ENSMLUP00000004964   0.000000746   43-91   TSP-1 type 1 repeat  
ENSMLUP00000005191   0.0000144   119-165   TSP-1 type 1 repeat  
ENSMLUP00000005961   0.00000222   144-196   TSP-1 type 1 repeat  
ENSMLUP00000006016   0.0000000000000144   486-542   TSP-1 type 1 repeat  
  0.0000000000209   1011-1069   TSP-1 type 1 repeat  
  0.0000000000523   1138-1198   TSP-1 type 1 repeat  
  0.0000000000772   895-957   TSP-1 type 1 repeat  
  0.00000000017   952-1012   TSP-1 type 1 repeat  
  0.00000000109   1293-1350   TSP-1 type 1 repeat  
  0.00000000209   1238-1294   TSP-1 type 1 repeat  
  0.00000000301   1354-1409   TSP-1 type 1 repeat  
  0.00000000419   1089-1141   TSP-1 type 1 repeat  
  0.0000000955   1591-1645   TSP-1 type 1 repeat  
  0.00000017   1460-1523   TSP-1 type 1 repeat  
  0.00000392   1406-1465   TSP-1 type 1 repeat  
  0.0000051   780-837   TSP-1 type 1 repeat  
  0.0183   839-897   TSP-1 type 1 repeat  
  0.0353   1529-1588   TSP-1 type 1 repeat  
ENSMLUP00000006520   0.0000000000366   403-460   TSP-1 type 1 repeat  
  0.000000000122   227-284   TSP-1 type 1 repeat  
  0.000000000144   285-341   TSP-1 type 1 repeat  
  0.000000000379   464-515   TSP-1 type 1 repeat  
  0.00000249   345-398   TSP-1 type 1 repeat  
  0.00000484   174-224   TSP-1 type 1 repeat  
ENSMLUP00000006789   0.00000981   171-215   TSP-1 type 1 repeat  
ENSMLUP00000006819   0.0000000000131   545-590   TSP-1 type 1 repeat  
  0.0000122   63-112   TSP-1 type 1 repeat  
ENSMLUP00000006887   0.0000000000017   1207-1264   TSP-1 type 1 repeat  
  0.00000000000183   131-178   TSP-1 type 1 repeat  
  0.0000000000131   556-620   TSP-1 type 1 repeat  
  0.00000000183   957-1014   TSP-1 type 1 repeat  
  0.00000000458   286-339   TSP-1 type 1 repeat  
  0.000000109   697-750   TSP-1 type 1 repeat  
  0.000000235   623-692   TSP-1 type 1 repeat  
  0.000000262   1338-1393   TSP-1 type 1 repeat  
  0.00000126   1089-1139   TSP-1 type 1 repeat  
  0.00000144   1262-1303   TSP-1 type 1 repeat  
  0.00000759   1013-1083   TSP-1 type 1 repeat  
  0.0000471   828-883   TSP-1 type 1 repeat  
  0.0000824   347-420   TSP-1 type 1 repeat  
  0.000157   1141-1199   TSP-1 type 1 repeat  
  0.000379   434-499   TSP-1 type 1 repeat  
  0.0249   53-126   TSP-1 type 1 repeat  
ENSMLUP00000006938   0.00000000262   501-547   TSP-1 type 1 repeat  
  0.0000000275   26-73   TSP-1 type 1 repeat  
ENSMLUP00000007438   0.00000000000000327   330-385   TSP-1 type 1 repeat  
  0.000000000249   751-797   TSP-1 type 1 repeat  
  0.00000000123   690-748   TSP-1 type 1 repeat  
  0.00000000955   628-686   TSP-1 type 1 repeat  
ENSMLUP00000007441   0.0000000000000109   736-788   TSP-1 type 1 repeat  
  0.0000000000000144   548-598   TSP-1 type 1 repeat  
  0.00000000000017   791-848   TSP-1 type 1 repeat  
  0.000000000157   602-654   TSP-1 type 1 repeat  
  0.00000602   851-894   TSP-1 type 1 repeat  
  0.000144   493-545   TSP-1 type 1 repeat  
ENSMLUP00000007474   0.000000000000209   545-600   TSP-1 type 1 repeat  
  0.00000000196   887-943   TSP-1 type 1 repeat  
  0.00000000379   824-883   TSP-1 type 1 repeat  
  0.0000000301   943-1001   TSP-1 type 1 repeat  
  0.000000109   1001-1053   TSP-1 type 1 repeat  
ENSMLUP00000007557   0.0000000000484   133-181   TSP-1 type 1 repeat  
  0.0000000000863   1207-1257   TSP-1 type 1 repeat  
  0.000000000602   551-614   TSP-1 type 1 repeat  
  0.00000000222   957-1014   TSP-1 type 1 repeat  
  0.0000000706   290-343   TSP-1 type 1 repeat  
  0.000000876   1013-1082   TSP-1 type 1 repeat  
  0.00000144   618-686   TSP-1 type 1 repeat  
  0.00000157   1327-1391   TSP-1 type 1 repeat  
  0.00000209   1088-1136   TSP-1 type 1 repeat  
  0.0000235   1140-1188   TSP-1 type 1 repeat  
  0.0000419   882-955   TSP-1 type 1 repeat  
  0.000157   826-883   TSP-1 type 1 repeat  
  0.000262   1257-1314   TSP-1 type 1 repeat  
  0.000549   56-128   TSP-1 type 1 repeat  
  0.000889   1-48   TSP-1 type 1 repeat  
  0.00314   351-433   TSP-1 type 1 repeat  
  0.00824   434-496   TSP-1 type 1 repeat  
ENSMLUP00000007721   7.59e-16   548-604   TSP-1 type 1 repeat  
  0.0000000000262   858-911   TSP-1 type 1 repeat  
ENSMLUP00000007757   0.0000000000235   484-531   TSP-1 type 1 repeat  
  0.000000000366   775-825   TSP-1 type 1 repeat  
  0.00000000085   824-884   TSP-1 type 1 repeat  
ENSMLUP00000008016   0.000000000785   149-200   TSP-1 type 1 repeat  
ENSMLUP00000008294   0.0000000000000327   211-262   TSP-1 type 1 repeat  
  0.00000000746   268-315   TSP-1 type 1 repeat  
ENSMLUP00000008484   2.49e-16   588-645   TSP-1 type 1 repeat  
  0.0000000000902   1131-1182   TSP-1 type 1 repeat  
  0.0000000222   930-993   TSP-1 type 1 repeat  
  0.000000112   1060-1120   TSP-1 type 1 repeat  
  0.000000968   993-1053   TSP-1 type 1 repeat  
  0.000235   883-933   TSP-1 type 1 repeat  
ENSMLUP00000008552   0.0000000000000654   362-417   TSP-1 type 1 repeat  
  0.00000000000131   311-357   TSP-1 type 1 repeat  
  0.00000000017   476-523   TSP-1 type 1 repeat  
  0.000000000262   417-472   TSP-1 type 1 repeat  
ENSMLUP00000009050   0.0000000000458   357-407   TSP-1 type 1 repeat  
  0.000000000235   581-648   TSP-1 type 1 repeat  
  0.000000000249   1462-1530   TSP-1 type 1 repeat  
  0.000000000575   703-769   TSP-1 type 1 repeat  
  0.00000000746   297-358   TSP-1 type 1 repeat  
  0.00000000772   649-708   TSP-1 type 1 repeat  
  0.0000000249   449-503   TSP-1 type 1 repeat  
  0.000000144   1592-1648   TSP-1 type 1 repeat  
  0.000000432   218-280   TSP-1 type 1 repeat  
  0.00000301   530-586   TSP-1 type 1 repeat  
  0.0000902   1530-1589   TSP-1 type 1 repeat  
  0.000445   1409-1468   TSP-1 type 1 repeat  
ENSMLUP00000009375   0.00000000000000902   539-594   TSP-1 type 1 repeat  
  0.000000000523   959-1009   TSP-1 type 1 repeat  
  0.00000000183   889-956   TSP-1 type 1 repeat  
  0.00000523   836-894   TSP-1 type 1 repeat  
ENSMLUP00000010121   3.66e-16   554-610   TSP-1 type 1 repeat  
  0.000000000301   902-963   TSP-1 type 1 repeat  
  0.000000000719   852-906   TSP-1 type 1 repeat  
ENSMLUP00000010146   0.000000000000115   334-388   TSP-1 type 1 repeat  
  0.0000000981   644-697   TSP-1 type 1 repeat  
ENSMLUP00000010284   0.00000000000000968   323-378   TSP-1 type 1 repeat  
  0.0000000012   1337-1398   TSP-1 type 1 repeat  
  0.00000000366   726-778   TSP-1 type 1 repeat  
  0.0000000889   608-664   TSP-1 type 1 repeat  
  0.000000114   661-722   TSP-1 type 1 repeat  
  0.000000144   1228-1291   TSP-1 type 1 repeat  
  0.000000249   1286-1339   TSP-1 type 1 repeat  
  0.00301   1191-1233   TSP-1 type 1 repeat  
ENSMLUP00000010701   0.00000000000000811   558-613   TSP-1 type 1 repeat  
  0.00000000863   968-1026   TSP-1 type 1 repeat  
  0.000000034   906-973   TSP-1 type 1 repeat  
  0.00000017   854-911   TSP-1 type 1 repeat  
ENSMLUP00000011728   0.0000000000000536   223-274   TSP-1 type 1 repeat  
  0.000000000183   276-331   TSP-1 type 1 repeat  
ENSMLUP00000012905   0.0000000000000575   564-620   TSP-1 type 1 repeat  
  0.0000000000144   1362-1419   TSP-1 type 1 repeat  
  0.000000000131   1164-1219   TSP-1 type 1 repeat  
  0.000000000275   1534-1593   TSP-1 type 1 repeat  
  0.000000000288   1083-1145   TSP-1 type 1 repeat  
  0.000000000785   1661-1710   TSP-1 type 1 repeat  
  0.00000000123   1214-1275   TSP-1 type 1 repeat  
  0.00000000235   1027-1087   TSP-1 type 1 repeat  
  0.00000000262   973-1032   TSP-1 type 1 repeat  
  0.000000012   1424-1478   TSP-1 type 1 repeat  
  0.0000000131   1596-1656   TSP-1 type 1 repeat  
  0.000000379   1476-1534   TSP-1 type 1 repeat  
  0.00000131   1308-1363   TSP-1 type 1 repeat  
  0.000123   857-912   TSP-1 type 1 repeat  
  0.00536   917-972   TSP-1 type 1 repeat  
ENSMLUP00000012986   0.0000000000183   544-589   TSP-1 type 1 repeat  
  0.00000706   40-87   TSP-1 type 1 repeat  
ENSMLUP00000013522   0.0000000000000085   219-269   TSP-1 type 1 repeat  
  0.000000000693   273-327   TSP-1 type 1 repeat  
ENSMLUP00000014095   0.00000628   228-272   TSP-1 type 1 repeat  
ENSMLUP00000014422   0.00000109   197-241   TSP-1 type 1 repeat  
ENSMLUP00000014745   0.0000222   194-241   TSP-1 type 1 repeat  
ENSMLUP00000014963   9.55e-18   499-556   TSP-1 type 1 repeat  
  7.98e-16   445-495   TSP-1 type 1 repeat  
  0.0000000000419   389-438   TSP-1 type 1 repeat  
ENSMLUP00000015304   7.72e-16   532-589   TSP-1 type 1 repeat  
  0.0000000000994   1076-1126   TSP-1 type 1 repeat  
  0.000000000889   870-935   TSP-1 type 1 repeat  
  0.00000000405   938-996   TSP-1 type 1 repeat  
  0.000000628   1002-1063   TSP-1 type 1 repeat  
  0.017   828-876   TSP-1 type 1 repeat  
ENSMLUP00000015412   0.000000000235   564-611   TSP-1 type 1 repeat  
  0.0000000301   24-78   TSP-1 type 1 repeat  
  0.00000105   80-128   TSP-1 type 1 repeat  
ENSMLUP00000015439   0.00000000000000112   4566-4624   TSP-1 type 1 repeat  
  0.00000000000000262   4510-4567   TSP-1 type 1 repeat  
  0.0000000000000262   4738-4795   TSP-1 type 1 repeat  
  0.0000000000000628   4624-4681   TSP-1 type 1 repeat  
  0.0000000000000654   4455-4506   TSP-1 type 1 repeat  
  0.000000000000471   4680-4738   TSP-1 type 1 repeat  
ENSMLUP00000015838   0.0000000000222   143-196   TSP-1 type 1 repeat  
ENSMLUP00000016040   0.0000000000017   844-900   TSP-1 type 1 repeat  
  0.0000000051   737-793   TSP-1 type 1 repeat  
  0.00000000955   671-733   TSP-1 type 1 repeat  
  0.000000034   392-442   TSP-1 type 1 repeat  
  0.0000000667   795-839   TSP-1 type 1 repeat  
ENSMLUP00000017749   0.00000000000183   336-391   TSP-1 type 1 repeat  
  0.00000000000732   282-336   TSP-1 type 1 repeat  
  0.0000000000122   391-446   TSP-1 type 1 repeat  
  0.000000000772   227-277   TSP-1 type 1 repeat  
  0.00000000811   479-532   TSP-1 type 1 repeat  
  0.000000419   169-215   TSP-1 type 1 repeat  
ENSMLUP00000019704   0.0000000000017   27-75   TSP-1 type 1 repeat  
  0.0000000000157   295-353   TSP-1 type 1 repeat  
  0.0000000000732   358-417   TSP-1 type 1 repeat  
  0.00000000222   417-473   TSP-1 type 1 repeat  
ENSMLUP00000019807   0.0000000000262   1-50   TSP-1 type 1 repeat  
  0.000017   149-174   TSP-1 type 1 repeat  
ENSMLUP00000020046   0.00000000000458   263-314   TSP-1 type 1 repeat  
  0.000000000017   143-191   TSP-1 type 1 repeat  
  0.00000000051   195-255   TSP-1 type 1 repeat  
  0.0000000101   83-138   TSP-1 type 1 repeat  
  0.00000301   382-418   TSP-1 type 1 repeat  
  0.00000523   318-377   TSP-1 type 1 repeat  
ENSMLUP00000022542   0.00000000000301   27-75   TSP-1 type 1 repeat  
  0.0000000000275   295-353   TSP-1 type 1 repeat  
  0.000000000123   358-417   TSP-1 type 1 repeat  
  0.00000000392   417-473   TSP-1 type 1 repeat  
 
Weak hits:
ENSMLUP00000005733   0.000759   204-247   TSP-1 type 1 repeat  
ENSMLUP00000010327   0.00131   142-179   TSP-1 type 1 repeat  
ENSMLUP00000011101   0.0562   172-204   TSP-1 type 1 repeat  
ENSMLUP00000011140   0.000497   147-200   TSP-1 type 1 repeat  
ENSMLUP00000011935   0.000249   72-132   TSP-1 type 1 repeat  
ENSMLUP00000017988   0.0445   205-253   TSP-1 type 1 repeat  
ENSMLUP00000021272   0.000589   72-124   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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