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  Home > Genomes > Pongo abelii 76_2 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
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Pongo abelii 76_2

Assignment details

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Pongo abelii 76_2 has 227 significant domains in 60 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000000469   7.85e-16   4583-4641   TSP-1 type 1 repeat  
  0.00000000000000144   4640-4698   TSP-1 type 1 repeat  
  0.00000000000000602   4528-4584   TSP-1 type 1 repeat  
  0.000000000000017   4812-4869   TSP-1 type 1 repeat  
  0.000000000000116   4698-4755   TSP-1 type 1 repeat  
  0.000000000000209   4754-4812   TSP-1 type 1 repeat  
ENSPPYP00000000708   0.00000000000000484   518-574   TSP-1 type 1 repeat  
ENSPPYP00000001048   0.00000000327   890-945   TSP-1 type 1 repeat  
  0.0000000085   832-890   TSP-1 type 1 repeat  
  0.0000000107   44-75   TSP-1 type 1 repeat  
  0.0000000111   703-761   TSP-1 type 1 repeat  
  0.000000012   645-703   TSP-1 type 1 repeat  
  0.000000889   765-828   TSP-1 type 1 repeat  
  0.000327   588-643   TSP-1 type 1 repeat  
ENSPPYP00000001382   0.00000575   227-272   TSP-1 type 1 repeat  
ENSPPYP00000001516   0.000000000549   550-591   TSP-1 type 1 repeat  
  0.00000196   63-112   TSP-1 type 1 repeat  
ENSPPYP00000001517   0.000000000301   539-584   TSP-1 type 1 repeat  
  0.0000131   37-84   TSP-1 type 1 repeat  
ENSPPYP00000001764   0.00000589   147-200   TSP-1 type 1 repeat  
ENSPPYP00000001855   0.0000000000000562   113-168   TSP-1 type 1 repeat  
  0.00000000000109   62-108   TSP-1 type 1 repeat  
  0.000000000562   227-274   TSP-1 type 1 repeat  
  0.0000000144   168-223   TSP-1 type 1 repeat  
ENSPPYP00000002744   0.00000000017   15-62   TSP-1 type 1 repeat  
ENSPPYP00000002748   0.0000000000000116   551-601   TSP-1 type 1 repeat  
  0.000000000811   908-967   TSP-1 type 1 repeat  
  0.000000000811   970-1020   TSP-1 type 1 repeat  
  0.000000122   846-905   TSP-1 type 1 repeat  
ENSPPYP00000003981   0.00000000000432   737-792   TSP-1 type 1 repeat  
  0.00000000000759   681-737   TSP-1 type 1 repeat  
  0.0000000000353   792-847   TSP-1 type 1 repeat  
  0.00000000112   628-678   TSP-1 type 1 repeat  
  0.000000017   881-934   TSP-1 type 1 repeat  
  0.000000876   570-616   TSP-1 type 1 repeat  
ENSPPYP00000004670   9.94e-16   523-579   TSP-1 type 1 repeat  
  0.0000000000471   832-886   TSP-1 type 1 repeat  
ENSPPYP00000004672   0.0000000000000116   514-570   TSP-1 type 1 repeat  
  0.000000000863   890-950   TSP-1 type 1 repeat  
  0.00000000981   839-891   TSP-1 type 1 repeat  
ENSPPYP00000005050   0.000000000000209   529-585   TSP-1 type 1 repeat  
  0.0000000000119   1180-1239   TSP-1 type 1 repeat  
  0.0000000000379   1330-1391   TSP-1 type 1 repeat  
  0.000000000144   1052-1110   TSP-1 type 1 repeat  
  0.00000000183   937-998   TSP-1 type 1 repeat  
  0.00000000249   994-1053   TSP-1 type 1 repeat  
  0.0000000051   1130-1182   TSP-1 type 1 repeat  
  0.00000000602   1279-1335   TSP-1 type 1 repeat  
  0.00000000955   1631-1685   TSP-1 type 1 repeat  
  0.0000000405   1396-1450   TSP-1 type 1 repeat  
  0.000000628   1445-1506   TSP-1 type 1 repeat  
  0.00000379   824-877   TSP-1 type 1 repeat  
  0.0144   876-938   TSP-1 type 1 repeat  
  0.0157   1572-1614   TSP-1 type 1 repeat  
ENSPPYP00000006140   0.000000000379   343-393   TSP-1 type 1 repeat  
ENSPPYP00000006783   0.000000000000536   275-333   TSP-1 type 1 repeat  
  0.0000000000693   339-397   TSP-1 type 1 repeat  
  0.0000000000994   27-75   TSP-1 type 1 repeat  
  0.000000000314   459-511   TSP-1 type 1 repeat  
  0.00000000327   396-453   TSP-1 type 1 repeat  
ENSPPYP00000006855   0.00000196   248-284   TSP-1 type 1 repeat  
ENSPPYP00000007178   2.49e-17   489-546   TSP-1 type 1 repeat  
  3.79e-16   435-484   TSP-1 type 1 repeat  
  0.000000000144   379-428   TSP-1 type 1 repeat  
ENSPPYP00000007445   0.00000000144   149-200   TSP-1 type 1 repeat  
ENSPPYP00000007492   0.0000000000916   854-911   TSP-1 type 1 repeat  
  0.000000000262   678-735   TSP-1 type 1 repeat  
  0.000000000275   736-792   TSP-1 type 1 repeat  
  0.00000000129   915-966   TSP-1 type 1 repeat  
  0.00000000824   52-95   TSP-1 type 1 repeat  
  0.00000183   796-849   TSP-1 type 1 repeat  
  0.00000589   625-675   TSP-1 type 1 repeat  
ENSPPYP00000007650   0.0000000000288   626-686   TSP-1 type 1 repeat  
  0.000000000549   419-479   TSP-1 type 1 repeat  
  0.00000000183   531-596   TSP-1 type 1 repeat  
  0.00000000209   474-534   TSP-1 type 1 repeat  
  0.00000000942   1346-1403   TSP-1 type 1 repeat  
  0.0000000222   75-123   TSP-1 type 1 repeat  
  0.0000000419   687-746   TSP-1 type 1 repeat  
  0.000000249   1407-1464   TSP-1 type 1 repeat  
  0.000000275   742-807   TSP-1 type 1 repeat  
  0.000000641   1520-1575   TSP-1 type 1 repeat  
  0.00000327   341-401   TSP-1 type 1 repeat  
ENSPPYP00000007737   0.0000000000000196   448-498   TSP-1 type 1 repeat  
  0.000000000129   878-934   TSP-1 type 1 repeat  
  0.00000000288   768-827   TSP-1 type 1 repeat  
  0.0000000235   830-873   TSP-1 type 1 repeat  
  0.0000000602   708-767   TSP-1 type 1 repeat  
ENSPPYP00000008546   8.5e-17   586-643   TSP-1 type 1 repeat  
  0.000000000127   1127-1177   TSP-1 type 1 repeat  
  0.00000000497   930-991   TSP-1 type 1 repeat  
  0.0000000068   994-1048   TSP-1 type 1 repeat  
  0.0000000824   1054-1115   TSP-1 type 1 repeat  
  0.000432   883-931   TSP-1 type 1 repeat  
ENSPPYP00000010462   0.000000000458   35-86   TSP-1 type 1 repeat  
ENSPPYP00000010668   0.000000000000209   546-601   TSP-1 type 1 repeat  
  0.00000000327   888-944   TSP-1 type 1 repeat  
  0.0000000144   825-884   TSP-1 type 1 repeat  
  0.0000000471   943-1002   TSP-1 type 1 repeat  
  0.0000000628   1001-1054   TSP-1 type 1 repeat  
ENSPPYP00000010948   0.0000000000157   188-241   TSP-1 type 1 repeat  
ENSPPYP00000011978   0.000000602   175-215   TSP-1 type 1 repeat  
ENSPPYP00000012328   0.0000419   191-237   TSP-1 type 1 repeat  
ENSPPYP00000012633   0.00000000000000109   557-613   TSP-1 type 1 repeat  
  0.000000000249   907-966   TSP-1 type 1 repeat  
  0.00000000366   856-909   TSP-1 type 1 repeat  
ENSPPYP00000012634   0.0000000000000811   567-621   TSP-1 type 1 repeat  
  0.000000235   877-930   TSP-1 type 1 repeat  
ENSPPYP00000015073   0.00000000000000314   849-906   TSP-1 type 1 repeat  
  0.00000000000000916   664-714   TSP-1 type 1 repeat  
  0.000000000000183   906-963   TSP-1 type 1 repeat  
  0.00000000785   718-769   TSP-1 type 1 repeat  
  0.00000615   963-1007   TSP-1 type 1 repeat  
  0.000131   609-661   TSP-1 type 1 repeat  
ENSPPYP00000015367   0.0000000000000706   586-642   TSP-1 type 1 repeat  
  0.0000000000719   1181-1237   TSP-1 type 1 repeat  
  0.000000000127   1378-1437   TSP-1 type 1 repeat  
  0.00000000017   1102-1163   TSP-1 type 1 repeat  
  0.00000000122   993-1051   TSP-1 type 1 repeat  
  0.00000000275   1046-1106   TSP-1 type 1 repeat  
  0.00000000471   1551-1610   TSP-1 type 1 repeat  
  0.00000000562   1232-1293   TSP-1 type 1 repeat  
  0.00000000772   1442-1496   TSP-1 type 1 repeat  
  0.00000000916   1325-1381   TSP-1 type 1 repeat  
  0.0000000196   1613-1673   TSP-1 type 1 repeat  
  0.0000000209   1678-1726   TSP-1 type 1 repeat  
  0.000000262   1494-1552   TSP-1 type 1 repeat  
  0.000719   877-930   TSP-1 type 1 repeat  
  0.00902   936-991   TSP-1 type 1 repeat  
ENSPPYP00000016229   0.00000000379   277-325   TSP-1 type 1 repeat  
ENSPPYP00000016547   0.00000000000000445   482-537   TSP-1 type 1 repeat  
  0.000000000128   901-947   TSP-1 type 1 repeat  
  0.0000000017   840-898   TSP-1 type 1 repeat  
  0.00000000602   778-836   TSP-1 type 1 repeat  
ENSPPYP00000016681   0.0000000000000458   259-310   TSP-1 type 1 repeat  
  0.0000000017   313-367   TSP-1 type 1 repeat  
ENSPPYP00000017122   7.06e-16   583-640   TSP-1 type 1 repeat  
  0.000000000119   1128-1177   TSP-1 type 1 repeat  
  0.00000000183   921-986   TSP-1 type 1 repeat  
  0.00000000235   989-1047   TSP-1 type 1 repeat  
  0.000000275   1054-1114   TSP-1 type 1 repeat  
  0.0209   879-927   TSP-1 type 1 repeat  
ENSPPYP00000017134   6.8e-17   807-865   TSP-1 type 1 repeat  
  0.00000000000000222   753-804   TSP-1 type 1 repeat  
  0.00000000000000458   565-615   TSP-1 type 1 repeat  
  0.000000000746   620-671   TSP-1 type 1 repeat  
  0.0000000837   866-911   TSP-1 type 1 repeat  
  0.000000445   509-562   TSP-1 type 1 repeat  
ENSPPYP00000017182   0.00000000000000222   350-405   TSP-1 type 1 repeat  
  0.00000000122   1286-1345   TSP-1 type 1 repeat  
  0.00000000484   753-805   TSP-1 type 1 repeat  
  0.0000000562   633-691   TSP-1 type 1 repeat  
  0.000000157   1233-1286   TSP-1 type 1 repeat  
  0.00000034   1174-1238   TSP-1 type 1 repeat  
  0.000000379   1129-1179   TSP-1 type 1 repeat  
  0.00000111   690-749   TSP-1 type 1 repeat  
ENSPPYP00000017232   0.00000000249   499-545   TSP-1 type 1 repeat  
  0.0000000746   26-73   TSP-1 type 1 repeat  
ENSPPYP00000017235   0.00000000131   564-612   TSP-1 type 1 repeat  
  0.000000114   24-78   TSP-1 type 1 repeat  
  0.000000575   80-128   TSP-1 type 1 repeat  
ENSPPYP00000017326   0.000000000000301   526-582   TSP-1 type 1 repeat  
  0.000000000107   812-869   TSP-1 type 1 repeat  
  0.000000000641   873-929   TSP-1 type 1 repeat  
  0.0000000209   987-1038   TSP-1 type 1 repeat  
  0.0000017   932-987   TSP-1 type 1 repeat  
ENSPPYP00000017604   0.00000000000196   1087-1143   TSP-1 type 1 repeat  
  0.00000000314   915-976   TSP-1 type 1 repeat  
  0.0000000068   980-1036   TSP-1 type 1 repeat  
  0.000000144   1038-1082   TSP-1 type 1 repeat  
  0.0000602   635-685   TSP-1 type 1 repeat  
ENSPPYP00000018034   0.0000000000000119   517-572   TSP-1 type 1 repeat  
  0.0000000106   865-932   TSP-1 type 1 repeat  
  0.0000000222   927-985   TSP-1 type 1 repeat  
  0.000000144   809-870   TSP-1 type 1 repeat  
ENSPPYP00000018746   0.0000000000000523   342-397   TSP-1 type 1 repeat  
  0.000000000000314   397-452   TSP-1 type 1 repeat  
  0.00000000000837   294-337   TSP-1 type 1 repeat  
  0.0000000126   452-507   TSP-1 type 1 repeat  
ENSPPYP00000018954   0.0000118   226-270   TSP-1 type 1 repeat  
ENSPPYP00000019027   0.0000000288   146-201   TSP-1 type 1 repeat  
ENSPPYP00000019049   0.00000353   198-242   TSP-1 type 1 repeat  
ENSPPYP00000019928   0.00000000000183   132-179   TSP-1 type 1 repeat  
  0.00000000000785   1221-1278   TSP-1 type 1 repeat  
  0.000000000034   568-632   TSP-1 type 1 repeat  
  0.00000000157   969-1028   TSP-1 type 1 repeat  
  0.00000000405   298-351   TSP-1 type 1 repeat  
  0.000000131   709-762   TSP-1 type 1 repeat  
  0.000000235   635-704   TSP-1 type 1 repeat  
  0.00000144   1348-1412   TSP-1 type 1 repeat  
  0.0000119   1276-1326   TSP-1 type 1 repeat  
  0.0000129   1027-1097   TSP-1 type 1 repeat  
  0.0000157   1103-1153   TSP-1 type 1 repeat  
  0.0000746   359-433   TSP-1 type 1 repeat  
  0.000131   840-895   TSP-1 type 1 repeat  
  0.000432   1156-1212   TSP-1 type 1 repeat  
  0.00249   446-511   TSP-1 type 1 repeat  
  0.027   904-968   TSP-1 type 1 repeat  
ENSPPYP00000020367   0.000000118   278-316   TSP-1 type 1 repeat  
  0.000798   28-76   TSP-1 type 1 repeat  
ENSPPYP00000020745   0.0000000000000562   233-283   TSP-1 type 1 repeat  
  0.00000000144   289-336   TSP-1 type 1 repeat  
ENSPPYP00000020942   0.00000000981   69-116   TSP-1 type 1 repeat  
ENSPPYP00000021114   0.00000262   96-148   TSP-1 type 1 repeat  
ENSPPYP00000021139   0.0000314   206-249   TSP-1 type 1 repeat  
ENSPPYP00000021220   0.0000000000000379   404-460   TSP-1 type 1 repeat  
  0.000000000000706   465-515   TSP-1 type 1 repeat  
  0.00000000000379   518-573   TSP-1 type 1 repeat  
  0.0000000000314   352-401   TSP-1 type 1 repeat  
  0.000000000157   261-309   TSP-1 type 1 repeat  
ENSPPYP00000021506   0.000000000249   782-849   TSP-1 type 1 repeat  
  0.000000000575   25-91   TSP-1 type 1 repeat  
  0.00000011   911-967   TSP-1 type 1 repeat  
  0.0000628   849-908   TSP-1 type 1 repeat  
  0.0000929   728-787   TSP-1 type 1 repeat  
ENSPPYP00000022133   0.00000000000000536   362-418   TSP-1 type 1 repeat  
  0.0000000353   717-784   TSP-1 type 1 repeat  
  0.0000000353   1046-1110   TSP-1 type 1 repeat  
  0.00000157   998-1052   TSP-1 type 1 repeat  
  0.0000123   931-992   TSP-1 type 1 repeat  
  0.00353   663-722   TSP-1 type 1 repeat  
ENSPPYP00000022137   0.0000000000654   853-911   TSP-1 type 1 repeat  
  0.00000000942   623-689   TSP-1 type 1 repeat  
  0.0000000103   49-105   TSP-1 type 1 repeat  
  0.0000000249   744-798   TSP-1 type 1 repeat  
  0.000000314   798-858   TSP-1 type 1 repeat  
  0.00000196   566-626   TSP-1 type 1 repeat  
  0.0000719   691-741   TSP-1 type 1 repeat  
ENSPPYP00000022718   0.00000000000562   257-308   TSP-1 type 1 repeat  
  0.00000000000654   137-186   TSP-1 type 1 repeat  
  0.0000000017   190-249   TSP-1 type 1 repeat  
  0.00000000484   77-132   TSP-1 type 1 repeat  
  0.000000119   311-371   TSP-1 type 1 repeat  
  0.0000144   376-415   TSP-1 type 1 repeat  
ENSPPYP00000023804   0.00000000034   131-190   TSP-1 type 1 repeat  
  0.000000068   20-83   TSP-1 type 1 repeat  
  0.00000327   81-132   TSP-1 type 1 repeat  
ENSPPYP00000024583   0.0000000017   529-588   TSP-1 type 1 repeat  
  0.0000000157   422-481   TSP-1 type 1 repeat  
  0.000000115   478-530   TSP-1 type 1 repeat  
  0.000000118   370-423   TSP-1 type 1 repeat  
 
Weak hits:
ENSPPYP00000001029   0.0706   205-253   TSP-1 type 1 repeat  
ENSPPYP00000009351   0.0275   172-204   TSP-1 type 1 repeat  
ENSPPYP00000011031   0.00772   142-178   TSP-1 type 1 repeat  
ENSPPYP00000012130   0.00549   138-190   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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