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  Home > Genomes > Ochotona princeps 69 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
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Ochotona princeps 69

Assignment details

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Ochotona princeps 69 has 204 significant domains in 59 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000000206   0.000000000000589   556-612   TSP-1 type 1 repeat  
  0.000000000523   842-899   TSP-1 type 1 repeat  
  0.000000000602   900-959   TSP-1 type 1 repeat  
  0.00034   1029-1069   TSP-1 type 1 repeat  
ENSOPRP00000000268   0.0000523   223-263   TSP-1 type 1 repeat  
ENSOPRP00000000423   0.00000000000000811   396-452   TSP-1 type 1 repeat  
  0.0000000000889   987-1046   TSP-1 type 1 repeat  
  0.000000000693   935-988   TSP-1 type 1 repeat  
  0.0000000122   802-863   TSP-1 type 1 repeat  
  0.0000000759   1433-1487   TSP-1 type 1 repeat  
  0.000000144   1248-1307   TSP-1 type 1 repeat  
  0.000000327   1302-1365   TSP-1 type 1 repeat  
  0.00000107   1196-1251   TSP-1 type 1 repeat  
  0.0000785   868-924   TSP-1 type 1 repeat  
ENSOPRP00000001325   0.000000017   852-908   TSP-1 type 1 repeat  
  0.000000017   970-1023   TSP-1 type 1 repeat  
  0.000000034   911-970   TSP-1 type 1 repeat  
ENSOPRP00000001378   0.0000000000353   706-760   TSP-1 type 1 repeat  
  0.000000000589   419-479   TSP-1 type 1 repeat  
  0.00000000262   474-534   TSP-1 type 1 repeat  
  0.00000000484   570-625   TSP-1 type 1 repeat  
  0.0000000183   1477-1544   TSP-1 type 1 repeat  
  0.0000000353   1426-1483   TSP-1 type 1 repeat  
  0.000000126   763-820   TSP-1 type 1 repeat  
  0.00000034   815-881   TSP-1 type 1 repeat  
  0.0000068   1600-1655   TSP-1 type 1 repeat  
ENSOPRP00000001631   0.0000000000209   31-82   TSP-1 type 1 repeat  
ENSOPRP00000001742   0.000000000222   104-161   TSP-1 type 1 repeat  
  0.000000000275   905-963   TSP-1 type 1 repeat  
  0.00000000667   675-741   TSP-1 type 1 repeat  
  0.0000000275   796-850   TSP-1 type 1 repeat  
  0.000000301   850-910   TSP-1 type 1 repeat  
  0.00000275   618-678   TSP-1 type 1 repeat  
  0.0000405   743-793   TSP-1 type 1 repeat  
ENSOPRP00000001874   0.0000000000301   339-397   TSP-1 type 1 repeat  
  0.000000000051   28-75   TSP-1 type 1 repeat  
  0.00000000034   458-511   TSP-1 type 1 repeat  
  0.000000000654   396-453   TSP-1 type 1 repeat  
  0.00209   297-333   TSP-1 type 1 repeat  
ENSOPRP00000002498   0.0000000000000392   391-441   TSP-1 type 1 repeat  
  0.00000000353   713-770   TSP-1 type 1 repeat  
  0.0000000327   773-816   TSP-1 type 1 repeat  
ENSOPRP00000003073   0.00000000000000863   519-575   TSP-1 type 1 repeat  
ENSOPRP00000003239   0.000000000000131   260-310   TSP-1 type 1 repeat  
  0.00000000235   313-367   TSP-1 type 1 repeat  
ENSOPRP00000003323   0.00000000824   946-998   TSP-1 type 1 repeat  
  0.0000000183   828-884   TSP-1 type 1 repeat  
  0.000000119   879-942   TSP-1 type 1 repeat  
  0.000000157   1322-1373   TSP-1 type 1 repeat  
  0.000000392   1480-1539   TSP-1 type 1 repeat  
  0.000275   1442-1480   TSP-1 type 1 repeat  
ENSOPRP00000003394   0.00000000000000876   150-206   TSP-1 type 1 repeat  
  0.00000000955   818-879   TSP-1 type 1 repeat  
  0.00000126   505-570   TSP-1 type 1 repeat  
  0.00000196   767-821   TSP-1 type 1 repeat  
  0.000068   696-761   TSP-1 type 1 repeat  
  0.000249   461-510   TSP-1 type 1 repeat  
  0.00262   652-701   TSP-1 type 1 repeat  
ENSOPRP00000003408   0.000000000288   537-583   TSP-1 type 1 repeat  
  0.0000000131   63-110   TSP-1 type 1 repeat  
ENSOPRP00000003526   0.000000000994   562-610   TSP-1 type 1 repeat  
  0.0000000968   24-78   TSP-1 type 1 repeat  
  0.000000262   80-128   TSP-1 type 1 repeat  
ENSOPRP00000003680   0.000000602   175-215   TSP-1 type 1 repeat  
ENSOPRP00000004176   0.00000000562   243-291   TSP-1 type 1 repeat  
ENSOPRP00000004470   0.0000000000000523   539-595   TSP-1 type 1 repeat  
  0.00000000445   1520-1579   TSP-1 type 1 repeat  
  0.00000000628   1409-1472   TSP-1 type 1 repeat  
  0.00000000837   947-997   TSP-1 type 1 repeat  
  0.0000000124   825-882   TSP-1 type 1 repeat  
  0.0000000641   1471-1521   TSP-1 type 1 repeat  
  0.0000353   1363-1414   TSP-1 type 1 repeat  
  0.0000615   880-945   TSP-1 type 1 repeat  
ENSOPRP00000004756   0.0000000000000536   216-266   TSP-1 type 1 repeat  
  0.00000000129   270-324   TSP-1 type 1 repeat  
ENSOPRP00000004880   0.00000497   197-242   TSP-1 type 1 repeat  
ENSOPRP00000005014   0.0000000000157   231-282   TSP-1 type 1 repeat  
  0.000000000471   76-131   TSP-1 type 1 repeat  
  0.000000497   351-390   TSP-1 type 1 repeat  
  0.00000144   286-351   TSP-1 type 1 repeat  
  0.0262   177-223   TSP-1 type 1 repeat  
ENSOPRP00000005044   0.00000000000000144   497-547   TSP-1 type 1 repeat  
  0.000000000366   385-433   TSP-1 type 1 repeat  
ENSOPRP00000005660   0.0000000000000183   245-296   TSP-1 type 1 repeat  
  0.000000000183   298-353   TSP-1 type 1 repeat  
ENSOPRP00000005908   0.000000000432   529-574   TSP-1 type 1 repeat  
  0.00000109   36-83   TSP-1 type 1 repeat  
ENSOPRP00000005916   4.58e-16   549-605   TSP-1 type 1 repeat  
  0.000000000107   899-958   TSP-1 type 1 repeat  
  0.000000000968   847-901   TSP-1 type 1 repeat  
ENSOPRP00000005918   0.00000000000942   544-590   TSP-1 type 1 repeat  
  0.00000196   63-111   TSP-1 type 1 repeat  
ENSOPRP00000006207   0.00000235   112-164   TSP-1 type 1 repeat  
ENSOPRP00000007742   0.00000000157   2-49   TSP-1 type 1 repeat  
ENSOPRP00000007756   0.0000000000994   855-912   TSP-1 type 1 repeat  
  0.00000000123   915-967   TSP-1 type 1 repeat  
  0.00000249   625-676   TSP-1 type 1 repeat  
  0.0000876   805-850   TSP-1 type 1 repeat  
ENSOPRP00000008087   0.00000667   147-201   TSP-1 type 1 repeat  
ENSOPRP00000008131   0.00000000589   240-287   TSP-1 type 1 repeat  
ENSOPRP00000008277   0.0000000000109   474-530   TSP-1 type 1 repeat  
  0.0000000000445   587-635   TSP-1 type 1 repeat  
  0.000000000889   421-471   TSP-1 type 1 repeat  
  0.0000000123   674-727   TSP-1 type 1 repeat  
  0.000000641   363-409   TSP-1 type 1 repeat  
ENSOPRP00000008557   0.00000000000222   187-234   TSP-1 type 1 repeat  
  0.0000000000105   1273-1330   TSP-1 type 1 repeat  
  0.00000000196   1021-1080   TSP-1 type 1 repeat  
  0.000000183   763-816   TSP-1 type 1 repeat  
  0.000000209   622-661   TSP-1 type 1 repeat  
  0.000000222   1404-1459   TSP-1 type 1 repeat  
  0.000000314   353-406   TSP-1 type 1 repeat  
  0.00000432   1155-1204   TSP-1 type 1 repeat  
  0.000011   1328-1378   TSP-1 type 1 repeat  
  0.0000471   1079-1150   TSP-1 type 1 repeat  
  0.000275   415-488   TSP-1 type 1 repeat  
  0.000432   1207-1264   TSP-1 type 1 repeat  
  0.00126   892-925   TSP-1 type 1 repeat  
  0.00837   111-182   TSP-1 type 1 repeat  
  0.012   53-105   TSP-1 type 1 repeat  
ENSOPRP00000008955   0.0000131   206-249   TSP-1 type 1 repeat  
ENSOPRP00000009292   0.00000000235   151-201   TSP-1 type 1 repeat  
ENSOPRP00000009376   0.000000000353   779-840   TSP-1 type 1 repeat  
  0.00000000144   35-67   TSP-1 type 1 repeat  
  0.00000000144   845-902   TSP-1 type 1 repeat  
  0.00000000196   906-957   TSP-1 type 1 repeat  
  0.00000000235   717-775   TSP-1 type 1 repeat  
  0.0000000068   659-717   TSP-1 type 1 repeat  
  0.000327   602-657   TSP-1 type 1 repeat  
ENSOPRP00000010377   0.0000034   232-276   TSP-1 type 1 repeat  
ENSOPRP00000010760   0.0000275   191-237   TSP-1 type 1 repeat  
ENSOPRP00000011540   0.0000000000000114   513-563   TSP-1 type 1 repeat  
  0.000000000432   935-985   TSP-1 type 1 repeat  
  0.000000144   866-932   TSP-1 type 1 repeat  
  0.000000249   812-870   TSP-1 type 1 repeat  
ENSOPRP00000011764   0.0000000000000222   4519-4577   TSP-1 type 1 repeat  
  0.0000000000000301   4576-4634   TSP-1 type 1 repeat  
  0.000000000000183   4463-4520   TSP-1 type 1 repeat  
  0.000000000000353   4406-4463   TSP-1 type 1 repeat  
ENSOPRP00000011832   0.000000000249   655-704   TSP-1 type 1 repeat  
  0.0000000209   710-763   TSP-1 type 1 repeat  
  0.00000902   867-925   TSP-1 type 1 repeat  
ENSOPRP00000011857   0.00000017   274-320   TSP-1 type 1 repeat  
  0.0000419   24-81   TSP-1 type 1 repeat  
ENSOPRP00000012010   0.0000000000129   179-226   TSP-1 type 1 repeat  
  0.00000000103   1247-1304   TSP-1 type 1 repeat  
  0.00000000902   598-661   TSP-1 type 1 repeat  
  0.000000366   997-1041   TSP-1 type 1 repeat  
  0.00000051   665-733   TSP-1 type 1 repeat  
  0.000000536   738-790   TSP-1 type 1 repeat  
  0.00000706   1373-1428   TSP-1 type 1 repeat  
  0.0000102   1182-1234   TSP-1 type 1 repeat  
  0.000068   42-94   TSP-1 type 1 repeat  
  0.000445   796-867   TSP-1 type 1 repeat  
  0.000523   100-174   TSP-1 type 1 repeat  
  0.000536   345-390   TSP-1 type 1 repeat  
  0.0017   868-900   TSP-1 type 1 repeat  
  0.0034   398-448   TSP-1 type 1 repeat  
  0.00916   1055-1095   TSP-1 type 1 repeat  
ENSOPRP00000012066   0.00000000000000445   577-634   TSP-1 type 1 repeat  
  0.000000000131   1125-1176   TSP-1 type 1 repeat  
  0.000000000222   918-982   TSP-1 type 1 repeat  
  0.000000144   985-1043   TSP-1 type 1 repeat  
  0.000000484   1050-1110   TSP-1 type 1 repeat  
  0.00288   874-923   TSP-1 type 1 repeat  
ENSOPRP00000012303   0.000000000000157   359-414   TSP-1 type 1 repeat  
  0.00000000085   308-354   TSP-1 type 1 repeat  
ENSOPRP00000012544   8.63e-16   799-851   TSP-1 type 1 repeat  
  0.00000000000000458   553-603   TSP-1 type 1 repeat  
  0.0000000017   608-659   TSP-1 type 1 repeat  
  0.000000536   854-899   TSP-1 type 1 repeat  
  0.00000419   497-550   TSP-1 type 1 repeat  
ENSOPRP00000012734   0.000000000000122   898-955   TSP-1 type 1 repeat  
  0.000034   958-1002   TSP-1 type 1 repeat  
ENSOPRP00000012900   0.00000000000589   396-449   TSP-1 type 1 repeat  
  0.0000000000085   291-334   TSP-1 type 1 repeat  
  0.00000000314   449-504   TSP-1 type 1 repeat  
ENSOPRP00000013079   1.31e-17   489-541   TSP-1 type 1 repeat  
  4.84e-16   433-482   TSP-1 type 1 repeat  
  0.0000000000327   377-426   TSP-1 type 1 repeat  
ENSOPRP00000013310   0.0000000000000301   400-456   TSP-1 type 1 repeat  
  0.000000000000837   461-510   TSP-1 type 1 repeat  
  0.00000000000301   514-569   TSP-1 type 1 repeat  
  0.0000000000249   348-397   TSP-1 type 1 repeat  
ENSOPRP00000013708   0.0000000000000017   524-580   TSP-1 type 1 repeat  
  0.0000000000183   833-887   TSP-1 type 1 repeat  
ENSOPRP00000013745   0.00000000000000536   514-570   TSP-1 type 1 repeat  
  0.000000000222   890-950   TSP-1 type 1 repeat  
  0.000000000275   839-891   TSP-1 type 1 repeat  
ENSOPRP00000013780   0.0000000000000497   564-618   TSP-1 type 1 repeat  
  0.000000157   874-927   TSP-1 type 1 repeat  
ENSOPRP00000014456   0.00000000000706   524-579   TSP-1 type 1 repeat  
  0.000000000353   943-989   TSP-1 type 1 repeat  
  0.00000000523   882-940   TSP-1 type 1 repeat  
  0.00000000798   820-878   TSP-1 type 1 repeat  
ENSOPRP00000014785   0.00000000301   845-901   TSP-1 type 1 repeat  
  0.00000012   901-959   TSP-1 type 1 repeat  
  0.000000275   547-579   TSP-1 type 1 repeat  
  0.00000051   959-994   TSP-1 type 1 repeat  
ENSOPRP00000014824   0.000000000249   1111-1169   TSP-1 type 1 repeat  
  0.00000000249   992-1045   TSP-1 type 1 repeat  
  0.0000000144   931-988   TSP-1 type 1 repeat  
  0.000000209   1051-1112   TSP-1 type 1 repeat  
  0.0000837   874-928   TSP-1 type 1 repeat  
ENSOPRP00000014937   0.000000000068   169-229   TSP-1 type 1 repeat  
  0.000000017   30-84   TSP-1 type 1 repeat  
  0.000000122   994-1050   TSP-1 type 1 repeat  
  0.000000589   228-272   TSP-1 type 1 repeat  
  0.0000667   811-870   TSP-1 type 1 repeat  
  0.00017   300-350   TSP-1 type 1 repeat  
  0.000301   930-991   TSP-1 type 1 repeat  
ENSOPRP00000015077   0.000000000000732   544-599   TSP-1 type 1 repeat  
  0.000000000034   1336-1393   TSP-1 type 1 repeat  
  0.0000000000562   1136-1193   TSP-1 type 1 repeat  
  0.0000000000968   1061-1119   TSP-1 type 1 repeat  
  0.00000000131   1006-1062   TSP-1 type 1 repeat  
  0.00000000353   1569-1629   TSP-1 type 1 repeat  
  0.00000000405   1188-1249   TSP-1 type 1 repeat  
  0.00000000458   1507-1566   TSP-1 type 1 repeat  
  0.00000000641   1281-1337   TSP-1 type 1 repeat  
  0.00000000994   1398-1452   TSP-1 type 1 repeat  
  0.0000000102   947-1007   TSP-1 type 1 repeat  
  0.0000000209   1634-1682   TSP-1 type 1 repeat  
  0.000000549   1450-1508   TSP-1 type 1 repeat  
  0.000484   831-886   TSP-1 type 1 repeat  
  0.00111   892-947   TSP-1 type 1 repeat  
ENSOPRP00000015646   0.00000222   194-238   TSP-1 type 1 repeat  
 
Weak hits:
ENSOPRP00000000238   0.000811   138-191   TSP-1 type 1 repeat  
ENSOPRP00000006416   0.000327   142-180   TSP-1 type 1 repeat  
ENSOPRP00000007600   0.051   433-462   TSP-1 type 1 repeat  
ENSOPRP00000012806   0.0241   206-254   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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