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  Home > Genomes > Pan troglodytes 76_2.1.4 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Pan troglodytes 76_2.1.4

Assignment details

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Pan troglodytes 76_2.1.4 has 244 significant domains in 62 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000000811   0.0000000000000693   361-416   TSP-1 type 1 repeat  
  0.00000000000131   310-356   TSP-1 type 1 repeat  
  0.00000000034   416-471   TSP-1 type 1 repeat  
  0.000000000706   475-522   TSP-1 type 1 repeat  
ENSPTRP00000000970   0.00000589   147-200   TSP-1 type 1 repeat  
ENSPTRP00000001363   0.000000000327   544-590   TSP-1 type 1 repeat  
  0.00000196   63-112   TSP-1 type 1 repeat  
ENSPTRP00000001581   0.00000575   227-272   TSP-1 type 1 repeat  
ENSPTRP00000002134   0.00000000144   997-1048   TSP-1 type 1 repeat  
  0.0000000034   935-993   TSP-1 type 1 repeat  
  0.00000000876   44-77   TSP-1 type 1 repeat  
  0.0000000126   806-864   TSP-1 type 1 repeat  
  0.0000000131   748-806   TSP-1 type 1 repeat  
  0.000000824   868-931   TSP-1 type 1 repeat  
  0.000458   691-746   TSP-1 type 1 repeat  
ENSPTRP00000002974   0.00000000000000144   4639-4697   TSP-1 type 1 repeat  
  0.0000000000000109   4527-4583   TSP-1 type 1 repeat  
  0.0000000000000124   4582-4640   TSP-1 type 1 repeat  
  0.0000000000000183   4811-4868   TSP-1 type 1 repeat  
  0.0000000000000628   4697-4754   TSP-1 type 1 repeat  
  0.000000000000131   4753-4811   TSP-1 type 1 repeat  
ENSPTRP00000004497   0.00000000000000575   555-605   TSP-1 type 1 repeat  
  0.000000000981   974-1024   TSP-1 type 1 repeat  
  0.000000017   912-971   TSP-1 type 1 repeat  
  0.000000122   850-909   TSP-1 type 1 repeat  
ENSPTRP00000007673   0.00000000000000118   552-608   TSP-1 type 1 repeat  
  0.0000000000667   863-915   TSP-1 type 1 repeat  
ENSPTRP00000007674   0.00000000000000955   514-570   TSP-1 type 1 repeat  
  0.000000000772   890-950   TSP-1 type 1 repeat  
  0.00000000628   839-891   TSP-1 type 1 repeat  
ENSPTRP00000008279   0.000000000000301   556-612   TSP-1 type 1 repeat  
  0.00000000000746   1111-1170   TSP-1 type 1 repeat  
  0.0000000000366   1261-1322   TSP-1 type 1 repeat  
  0.00000000196   963-1024   TSP-1 type 1 repeat  
  0.00000000523   1061-1113   TSP-1 type 1 repeat  
  0.00000000589   1210-1266   TSP-1 type 1 repeat  
  0.00000000916   1562-1616   TSP-1 type 1 repeat  
  0.0000000379   1327-1381   TSP-1 type 1 repeat  
  0.000000575   1376-1437   TSP-1 type 1 repeat  
  0.00000471   851-904   TSP-1 type 1 repeat  
  0.0157   910-964   TSP-1 type 1 repeat  
  0.017   1503-1545   TSP-1 type 1 repeat  
ENSPTRP00000011183   0.00000445   325-361   TSP-1 type 1 repeat  
ENSPTRP00000011794   2.49e-17   489-546   TSP-1 type 1 repeat  
  3.79e-16   435-484   TSP-1 type 1 repeat  
  0.000000000144   379-428   TSP-1 type 1 repeat  
ENSPTRP00000012263   0.0000000017   149-200   TSP-1 type 1 repeat  
ENSPTRP00000012566   0.0000000000000314   487-543   TSP-1 type 1 repeat  
  0.000000458   771-830   TSP-1 type 1 repeat  
  0.000366   890-917   TSP-1 type 1 repeat  
  0.0301   830-863   TSP-1 type 1 repeat  
ENSPTRP00000012633   0.0000000000405   706-759   TSP-1 type 1 repeat  
  0.000000000589   419-479   TSP-1 type 1 repeat  
  0.00000000183   474-534   TSP-1 type 1 repeat  
  0.00000000196   571-625   TSP-1 type 1 repeat  
  0.0000000209   75-123   TSP-1 type 1 repeat  
  0.0000000353   1425-1483   TSP-1 type 1 repeat  
  0.0000000458   759-819   TSP-1 type 1 repeat  
  0.000000183   1477-1544   TSP-1 type 1 repeat  
  0.000000222   815-880   TSP-1 type 1 repeat  
  0.00000118   1599-1655   TSP-1 type 1 repeat  
  0.0000034   341-401   TSP-1 type 1 repeat  
  0.00000562   647-703   TSP-1 type 1 repeat  
ENSPTRP00000012811   0.0000000000000122   542-592   TSP-1 type 1 repeat  
  0.000000000484   856-921   TSP-1 type 1 repeat  
  0.000000000929   972-1028   TSP-1 type 1 repeat  
  0.0000000235   924-967   TSP-1 type 1 repeat  
  0.000000068   802-861   TSP-1 type 1 repeat  
ENSPTRP00000014297   1.07e-16   586-643   TSP-1 type 1 repeat  
  0.0000000000628   1124-1177   TSP-1 type 1 repeat  
  0.00000000497   930-991   TSP-1 type 1 repeat  
  0.00000000589   994-1048   TSP-1 type 1 repeat  
  0.0000000824   1054-1115   TSP-1 type 1 repeat  
  0.000222   883-931   TSP-1 type 1 repeat  
ENSPTRP00000017745   0.000000000000209   546-601   TSP-1 type 1 repeat  
  0.0000000034   888-944   TSP-1 type 1 repeat  
  0.0000000157   825-884   TSP-1 type 1 repeat  
  0.0000000497   943-1002   TSP-1 type 1 repeat  
  0.0000000654   1001-1054   TSP-1 type 1 repeat  
ENSPTRP00000018328   0.0000000000144   143-196   TSP-1 type 1 repeat  
ENSPTRP00000022738   0.000000602   175-215   TSP-1 type 1 repeat  
ENSPTRP00000023798   0.00000000000000109   557-613   TSP-1 type 1 repeat  
  0.000000000876   905-966   TSP-1 type 1 repeat  
  0.0000000068   856-909   TSP-1 type 1 repeat  
ENSPTRP00000023799   0.0000000000000811   567-621   TSP-1 type 1 repeat  
  0.000000235   877-930   TSP-1 type 1 repeat  
ENSPTRP00000026041   0.0000000000000706   586-642   TSP-1 type 1 repeat  
  0.0000000000602   1107-1165   TSP-1 type 1 repeat  
  0.0000000000719   1183-1239   TSP-1 type 1 repeat  
  0.0000000000981   1380-1439   TSP-1 type 1 repeat  
  0.00000000235   1049-1108   TSP-1 type 1 repeat  
  0.00000000262   1553-1612   TSP-1 type 1 repeat  
  0.00000000497   993-1053   TSP-1 type 1 repeat  
  0.00000000562   1234-1295   TSP-1 type 1 repeat  
  0.00000000785   1444-1498   TSP-1 type 1 repeat  
  0.00000000929   1327-1383   TSP-1 type 1 repeat  
  0.0000000196   1615-1675   TSP-1 type 1 repeat  
  0.0000000235   1680-1727   TSP-1 type 1 repeat  
  0.000000288   1496-1554   TSP-1 type 1 repeat  
  0.0000759   877-932   TSP-1 type 1 repeat  
  0.0101   938-993   TSP-1 type 1 repeat  
ENSPTRP00000026378   0.0000000000000034   848-905   TSP-1 type 1 repeat  
  0.00000000000000968   662-712   TSP-1 type 1 repeat  
  0.000000000000196   905-962   TSP-1 type 1 repeat  
  0.000000000301   716-768   TSP-1 type 1 repeat  
  0.0000106   963-1007   TSP-1 type 1 repeat  
  0.000144   607-659   TSP-1 type 1 repeat  
ENSPTRP00000027253   0.00000000379   277-325   TSP-1 type 1 repeat  
ENSPTRP00000027755   0.00000000000000484   550-605   TSP-1 type 1 repeat  
  0.000000000144   969-1015   TSP-1 type 1 repeat  
  0.00000000183   908-966   TSP-1 type 1 repeat  
  0.00000000641   846-904   TSP-1 type 1 repeat  
ENSPTRP00000027990   0.00000000000131   259-310   TSP-1 type 1 repeat  
  0.0000000017   313-367   TSP-1 type 1 repeat  
ENSPTRP00000028673   7.06e-16   583-640   TSP-1 type 1 repeat  
  0.000000000131   1128-1180   TSP-1 type 1 repeat  
  0.00000000196   921-986   TSP-1 type 1 repeat  
  0.00000000301   989-1047   TSP-1 type 1 repeat  
  0.000000471   1054-1114   TSP-1 type 1 repeat  
  0.0432   879-927   TSP-1 type 1 repeat  
ENSPTRP00000028691   7.06e-17   837-895   TSP-1 type 1 repeat  
  0.00000000000000235   783-834   TSP-1 type 1 repeat  
  0.00000000000000484   595-645   TSP-1 type 1 repeat  
  0.000000000772   650-701   TSP-1 type 1 repeat  
  0.0000000693   896-941   TSP-1 type 1 repeat  
  0.00000114   539-592   TSP-1 type 1 repeat  
ENSPTRP00000028768   0.00000000000000249   541-596   TSP-1 type 1 repeat  
  0.00000000127   1450-1509   TSP-1 type 1 repeat  
  0.00000000536   924-976   TSP-1 type 1 repeat  
  0.0000000615   804-862   TSP-1 type 1 repeat  
  0.000000314   1397-1450   TSP-1 type 1 repeat  
  0.000000405   1338-1402   TSP-1 type 1 repeat  
  0.000000497   1293-1343   TSP-1 type 1 repeat  
  0.00000122   861-920   TSP-1 type 1 repeat  
ENSPTRP00000028833   0.00000549   41-89   TSP-1 type 1 repeat  
ENSPTRP00000028843   0.00000000222   564-612   TSP-1 type 1 repeat  
  0.0000000249   24-78   TSP-1 type 1 repeat  
  0.000000575   80-128   TSP-1 type 1 repeat  
ENSPTRP00000029429   0.00000000000196   1087-1143   TSP-1 type 1 repeat  
  0.0000000068   980-1036   TSP-1 type 1 repeat  
  0.000000011   915-976   TSP-1 type 1 repeat  
  0.0000000419   635-685   TSP-1 type 1 repeat  
  0.0000000575   1038-1082   TSP-1 type 1 repeat  
ENSPTRP00000030092   0.0000000000000144   558-613   TSP-1 type 1 repeat  
  0.000000109   850-911   TSP-1 type 1 repeat  
  0.0000732   937-978   TSP-1 type 1 repeat  
  0.0017   913-936   TSP-1 type 1 repeat  
ENSPTRP00000031309   0.0000000000000536   342-397   TSP-1 type 1 repeat  
  0.000000000000314   397-452   TSP-1 type 1 repeat  
  0.0000000000085   294-337   TSP-1 type 1 repeat  
  0.00000000432   452-507   TSP-1 type 1 repeat  
ENSPTRP00000031716   0.0000000107   146-201   TSP-1 type 1 repeat  
ENSPTRP00000031762   0.00000327   197-242   TSP-1 type 1 repeat  
ENSPTRP00000034815   0.0000000102   74-121   TSP-1 type 1 repeat  
ENSPTRP00000035066   0.00000458   144-196   TSP-1 type 1 repeat  
ENSPTRP00000035113   0.0000314   206-249   TSP-1 type 1 repeat  
ENSPTRP00000035228   0.0000102   214-259   TSP-1 type 1 repeat  
ENSPTRP00000035283   0.0000000000000327   404-460   TSP-1 type 1 repeat  
  0.000000000000602   465-515   TSP-1 type 1 repeat  
  0.0000000000262   352-401   TSP-1 type 1 repeat  
  0.000000000131   261-309   TSP-1 type 1 repeat  
ENSPTRP00000037513   0.00000000000262   257-308   TSP-1 type 1 repeat  
  0.00000000000602   137-186   TSP-1 type 1 repeat  
  0.000000000196   189-249   TSP-1 type 1 repeat  
  0.00000000262   77-132   TSP-1 type 1 repeat  
  0.0000000628   311-371   TSP-1 type 1 repeat  
  0.00000602   376-415   TSP-1 type 1 repeat  
ENSPTRP00000038828   0.0000000000916   854-911   TSP-1 type 1 repeat  
  0.000000000262   678-735   TSP-1 type 1 repeat  
  0.000000000275   736-792   TSP-1 type 1 repeat  
  0.00000000129   915-966   TSP-1 type 1 repeat  
  0.0000000131   52-94   TSP-1 type 1 repeat  
  0.00000183   796-849   TSP-1 type 1 repeat  
  0.00000589   625-675   TSP-1 type 1 repeat  
ENSPTRP00000038877   0.00000000000000523   340-396   TSP-1 type 1 repeat  
  0.0000000366   695-762   TSP-1 type 1 repeat  
  0.0000000405   1024-1088   TSP-1 type 1 repeat  
  0.00000085   976-1030   TSP-1 type 1 repeat  
  0.00000405   906-970   TSP-1 type 1 repeat  
  0.00157   641-700   TSP-1 type 1 repeat  
  0.0353   857-909   TSP-1 type 1 repeat  
ENSPTRP00000039456   0.00000000123   499-545   TSP-1 type 1 repeat  
  0.00000017   26-73   TSP-1 type 1 repeat  
ENSPTRP00000040418   0.00000000000000484   518-574   TSP-1 type 1 repeat  
ENSPTRP00000040565   0.0000000000759   950-1008   TSP-1 type 1 repeat  
  0.000000000353   722-786   TSP-1 type 1 repeat  
  0.0000000116   158-214   TSP-1 type 1 repeat  
  0.0000000262   841-895   TSP-1 type 1 repeat  
  0.000000353   895-955   TSP-1 type 1 repeat  
  0.00000837   675-719   TSP-1 type 1 repeat  
  0.0000811   788-838   TSP-1 type 1 repeat  
ENSPTRP00000046097   0.000000000327   539-584   TSP-1 type 1 repeat  
  0.00000837   37-84   TSP-1 type 1 repeat  
ENSPTRP00000046310   0.0000118   226-270   TSP-1 type 1 repeat  
ENSPTRP00000047819   0.00000000128   218-272   TSP-1 type 1 repeat  
ENSPTRP00000048252   0.000000000000314   556-612   TSP-1 type 1 repeat  
  0.000000000111   842-899   TSP-1 type 1 repeat  
  0.000000000667   903-959   TSP-1 type 1 repeat  
  0.0000000196   1017-1068   TSP-1 type 1 repeat  
  0.0000017   962-1017   TSP-1 type 1 repeat  
ENSPTRP00000048447   0.00000000000183   191-238   TSP-1 type 1 repeat  
  0.00000000000824   1280-1337   TSP-1 type 1 repeat  
  0.0000000000366   627-691   TSP-1 type 1 repeat  
  0.00000000157   1028-1087   TSP-1 type 1 repeat  
  0.0000000106   357-410   TSP-1 type 1 repeat  
  0.000000222   768-821   TSP-1 type 1 repeat  
  0.000000249   694-763   TSP-1 type 1 repeat  
  0.000000314   1411-1466   TSP-1 type 1 repeat  
  0.0000111   1086-1156   TSP-1 type 1 repeat  
  0.0000112   1335-1385   TSP-1 type 1 repeat  
  0.0000157   1162-1212   TSP-1 type 1 repeat  
  0.0000706   899-954   TSP-1 type 1 repeat  
  0.0000889   417-491   TSP-1 type 1 repeat  
  0.000497   1215-1270   TSP-1 type 1 repeat  
  0.00327   505-570   TSP-1 type 1 repeat  
  0.0209   960-1027   TSP-1 type 1 repeat  
ENSPTRP00000049156   0.000000000222   179-226   TSP-1 type 1 repeat  
  0.000000000471   1249-1299   TSP-1 type 1 repeat  
  0.000000000824   597-660   TSP-1 type 1 repeat  
  0.00000000157   996-1044   TSP-1 type 1 repeat  
  0.0000000196   336-389   TSP-1 type 1 repeat  
  0.000000196   1055-1124   TSP-1 type 1 repeat  
  0.000000366   664-732   TSP-1 type 1 repeat  
  0.000000432   1369-1433   TSP-1 type 1 repeat  
  0.00000051   737-789   TSP-1 type 1 repeat  
  0.00000327   1130-1178   TSP-1 type 1 repeat  
  0.0000183   921-995   TSP-1 type 1 repeat  
  0.0000183   1302-1356   TSP-1 type 1 repeat  
  0.000105   1182-1232   TSP-1 type 1 repeat  
  0.000209   795-865   TSP-1 type 1 repeat  
  0.000379   42-94   TSP-1 type 1 repeat  
  0.00101   867-921   TSP-1 type 1 repeat  
  0.00157   102-174   TSP-1 type 1 repeat  
  0.00327   397-479   TSP-1 type 1 repeat  
  0.0034   480-542   TSP-1 type 1 repeat  
ENSPTRP00000049427   0.000000000222   669-728   TSP-1 type 1 repeat  
  0.000000000458   1540-1607   TSP-1 type 1 repeat  
  0.00000000124   783-849   TSP-1 type 1 repeat  
  0.00000000157   432-492   TSP-1 type 1 repeat  
  0.00000000693   32-81   TSP-1 type 1 repeat  
  0.0000000144   376-437   TSP-1 type 1 repeat  
  0.0000000301   529-583   TSP-1 type 1 repeat  
  0.000000209   1669-1725   TSP-1 type 1 repeat  
  0.000000235   728-788   TSP-1 type 1 repeat  
  0.000000249   296-359   TSP-1 type 1 repeat  
  0.000000484   610-666   TSP-1 type 1 repeat  
  0.000118   1607-1666   TSP-1 type 1 repeat  
  0.000183   1486-1545   TSP-1 type 1 repeat  
ENSPTRP00000052575   0.0000000000017   233-291   TSP-1 type 1 repeat  
  0.0000000000275   297-355   TSP-1 type 1 repeat  
  0.0000000000942   27-75   TSP-1 type 1 repeat  
  0.000000000301   417-469   TSP-1 type 1 repeat  
  0.00000000327   354-411   TSP-1 type 1 repeat  
ENSPTRP00000053202   0.0000000000000562   251-301   TSP-1 type 1 repeat  
  0.00000000144   307-354   TSP-1 type 1 repeat  
ENSPTRP00000053487   0.00000000017   343-389   TSP-1 type 1 repeat  
ENSPTRP00000056841   0.000000000549   45-96   TSP-1 type 1 repeat  
ENSPTRP00000059899   0.000000000602   339-385   TSP-1 type 1 repeat  
  0.0000000811   26-73   TSP-1 type 1 repeat  
ENSPTRP00000060857   0.00000000000000235   541-596   TSP-1 type 1 repeat  
  0.0000000012   1385-1444   TSP-1 type 1 repeat  
  0.00000000523   859-911   TSP-1 type 1 repeat  
  0.0000000602   739-797   TSP-1 type 1 repeat  
  0.000000288   1332-1385   TSP-1 type 1 repeat  
  0.000000379   1273-1337   TSP-1 type 1 repeat  
  0.000000484   1228-1278   TSP-1 type 1 repeat  
  0.0000012   796-855   TSP-1 type 1 repeat  
ENSPTRP00000060924   0.0000000497   26-73   TSP-1 type 1 repeat  
 
Weak hits:
ENSPTRP00000018549   0.00249   142-179   TSP-1 type 1 repeat  
ENSPTRP00000022516   0.00288   137-189   TSP-1 type 1 repeat  
ENSPTRP00000040093   0.0602   205-253   TSP-1 type 1 repeat  
ENSPTRP00000052123   0.000116   192-237   TSP-1 type 1 repeat  
ENSPTRP00000056925   0.0275   172-204   TSP-1 type 1 repeat  
ENSPTRP00000060606   0.0275   25-55   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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