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  Home > Genomes > Taeniopygia guttata 69_3.2.4 > TSP-1 type 1 repeat domains


TSP-1 type 1 repeat superfamily domain assignments
in
Taeniopygia guttata 69_3.2.4

Assignment details

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Taeniopygia guttata 69_3.2.4 has 253 significant domains in 65 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTGUP00000000352   0.0000000000000706   523-578   TSP-1 type 1 repeat  
  0.0000000000772   864-921   TSP-1 type 1 repeat  
  0.00000000785   804-861   TSP-1 type 1 repeat  
  0.0000000523   979-1019   TSP-1 type 1 repeat  
  0.000000379   925-979   TSP-1 type 1 repeat  
ENSTGUP00000000384   0.000000000000968   934-990   TSP-1 type 1 repeat  
  0.0000000124   827-883   TSP-1 type 1 repeat  
  0.0000000209   760-823   TSP-1 type 1 repeat  
  0.0000000366   885-929   TSP-1 type 1 repeat  
  0.0000000693   484-532   TSP-1 type 1 repeat  
ENSTGUP00000000511   0.0000000000000693   219-270   TSP-1 type 1 repeat  
  0.000000000131   273-327   TSP-1 type 1 repeat  
ENSTGUP00000000732   0.0000000000000157   309-364   TSP-1 type 1 repeat  
  0.0000000000772   656-716   TSP-1 type 1 repeat  
  0.0000000445   607-657   TSP-1 type 1 repeat  
ENSTGUP00000000743   0.0000000000000144   310-366   TSP-1 type 1 repeat  
  0.000000000458   607-662   TSP-1 type 1 repeat  
  0.00000000314   660-692   TSP-1 type 1 repeat  
ENSTGUP00000001149   4.05e-16   451-506   TSP-1 type 1 repeat  
  0.00000000589   807-865   TSP-1 type 1 repeat  
  0.000000017   746-803   TSP-1 type 1 repeat  
  0.000000017   867-918   TSP-1 type 1 repeat  
ENSTGUP00000001588   0.0000116   147-201   TSP-1 type 1 repeat  
ENSTGUP00000001658   0.0000000000000101   449-504   TSP-1 type 1 repeat  
  0.00000000118   868-914   TSP-1 type 1 repeat  
  0.00000000235   807-865   TSP-1 type 1 repeat  
  0.00000000288   745-803   TSP-1 type 1 repeat  
ENSTGUP00000002001   0.0000000000000405   496-552   TSP-1 type 1 repeat  
  0.000000000157   1423-1485   TSP-1 type 1 repeat  
  0.000000017   1316-1379   TSP-1 type 1 repeat  
  0.0000000209   901-953   TSP-1 type 1 repeat  
  0.0000000353   782-839   TSP-1 type 1 repeat  
  0.000000157   1374-1428   TSP-1 type 1 repeat  
  0.000000314   1271-1321   TSP-1 type 1 repeat  
  0.00000353   834-897   TSP-1 type 1 repeat  
ENSTGUP00000002220   0.000000575   2-50   TSP-1 type 1 repeat  
ENSTGUP00000002273   0.0000000000209   482-528   TSP-1 type 1 repeat  
  0.0000000183   23-70   TSP-1 type 1 repeat  
ENSTGUP00000002291   0.000000000131   564-612   TSP-1 type 1 repeat  
  0.00000000379   24-78   TSP-1 type 1 repeat  
  0.0000000222   80-127   TSP-1 type 1 repeat  
ENSTGUP00000002478   0.000000000000366   127-183   TSP-1 type 1 repeat  
  0.00000000000785   1215-1272   TSP-1 type 1 repeat  
  0.00000000144   564-627   TSP-1 type 1 repeat  
  0.00000000196   964-1023   TSP-1 type 1 repeat  
  0.0000000111   1346-1401   TSP-1 type 1 repeat  
  0.0000000131   1094-1148   TSP-1 type 1 repeat  
  0.0000000471   627-699   TSP-1 type 1 repeat  
  0.0000000667   704-757   TSP-1 type 1 repeat  
  0.000000523   297-350   TSP-1 type 1 repeat  
  0.00000575   1270-1320   TSP-1 type 1 repeat  
  0.0000209   835-889   TSP-1 type 1 repeat  
  0.0000589   358-443   TSP-1 type 1 repeat  
  0.0000589   1022-1093   TSP-1 type 1 repeat  
  0.000157   1149-1211   TSP-1 type 1 repeat  
  0.00157   445-507   TSP-1 type 1 repeat  
  0.0119   890-963   TSP-1 type 1 repeat  
  0.0144   55-126   TSP-1 type 1 repeat  
ENSTGUP00000002539   0.0000000536   176-216   TSP-1 type 1 repeat  
ENSTGUP00000002907   0.000000000000654   552-608   TSP-1 type 1 repeat  
  0.00000000000732   899-955   TSP-1 type 1 repeat  
  0.000000000497   839-895   TSP-1 type 1 repeat  
  0.0000000301   1013-1064   TSP-1 type 1 repeat  
  0.00000131   958-1013   TSP-1 type 1 repeat  
ENSTGUP00000003333   0.0000000000000327   218-269   TSP-1 type 1 repeat  
  0.00000000196   272-326   TSP-1 type 1 repeat  
ENSTGUP00000003792   3.79e-16   4603-4660   TSP-1 type 1 repeat  
  0.00000000000000654   4488-4546   TSP-1 type 1 repeat  
  0.0000000000000102   4545-4603   TSP-1 type 1 repeat  
  0.0000000000000262   4717-4774   TSP-1 type 1 repeat  
  0.000000000000798   4659-4717   TSP-1 type 1 repeat  
  0.0000000000017   4433-4489   TSP-1 type 1 repeat  
ENSTGUP00000004447   0.0000000000000115   219-270   TSP-1 type 1 repeat  
  0.000000000122   273-327   TSP-1 type 1 repeat  
ENSTGUP00000004508   9.42e-16   794-846   TSP-1 type 1 repeat  
  0.00000000000000497   606-656   TSP-1 type 1 repeat  
  0.0000000000000112   848-906   TSP-1 type 1 repeat  
  0.0000000000759   660-712   TSP-1 type 1 repeat  
  0.000000484   908-953   TSP-1 type 1 repeat  
  0.0000405   551-603   TSP-1 type 1 repeat  
ENSTGUP00000004552   0.00000000249   413-480   TSP-1 type 1 repeat  
  0.00000102   541-598   TSP-1 type 1 repeat  
  0.0000942   479-539   TSP-1 type 1 repeat  
  0.000458   362-418   TSP-1 type 1 repeat  
ENSTGUP00000004577   0.00000000068   430-490   TSP-1 type 1 repeat  
  0.00000000458   527-581   TSP-1 type 1 repeat  
  0.00000000484   375-435   TSP-1 type 1 repeat  
  0.0000000144   31-79   TSP-1 type 1 repeat  
  0.000000112   608-664   TSP-1 type 1 repeat  
  0.00000017   294-357   TSP-1 type 1 repeat  
ENSTGUP00000004767   0.0000000000000876   213-263   TSP-1 type 1 repeat  
  0.00000000235   267-321   TSP-1 type 1 repeat  
ENSTGUP00000005289   0.0000000000034   529-585   TSP-1 type 1 repeat  
  0.00000000000693   585-640   TSP-1 type 1 repeat  
  0.0000000000955   642-690   TSP-1 type 1 repeat  
  0.000000000327   476-526   TSP-1 type 1 repeat  
  0.0000000366   730-782   TSP-1 type 1 repeat  
  0.00000144   418-464   TSP-1 type 1 repeat  
ENSTGUP00000005716   0.00000000000000196   297-353   TSP-1 type 1 repeat  
  0.00000000366   977-1041   TSP-1 type 1 repeat  
  0.00000034   712-776   TSP-1 type 1 repeat  
  0.0000111   921-983   TSP-1 type 1 repeat  
  0.0000129   598-657   TSP-1 type 1 repeat  
  0.000641   806-864   TSP-1 type 1 repeat  
ENSTGUP00000005791   0.00000000017   812-870   TSP-1 type 1 repeat  
  0.00000000641   14-71   TSP-1 type 1 repeat  
  0.0000000123   582-648   TSP-1 type 1 repeat  
  0.0000000458   703-757   TSP-1 type 1 repeat  
  0.0000000732   752-817   TSP-1 type 1 repeat  
  0.0000131   527-585   TSP-1 type 1 repeat  
  0.0000615   650-700   TSP-1 type 1 repeat  
ENSTGUP00000006004   0.000000000112   900-951   TSP-1 type 1 repeat  
  0.000000000249   721-777   TSP-1 type 1 repeat  
  0.000000000798   840-896   TSP-1 type 1 repeat  
  0.000000000929   663-720   TSP-1 type 1 repeat  
  0.0000000301   52-93   TSP-1 type 1 repeat  
  0.000000392   781-834   TSP-1 type 1 repeat  
  0.0000105   611-660   TSP-1 type 1 repeat  
ENSTGUP00000006081   0.0000000000000157   548-604   TSP-1 type 1 repeat  
  0.00000000000288   1198-1257   TSP-1 type 1 repeat  
  0.000000000235   1350-1409   TSP-1 type 1 repeat  
  0.000000000719   1069-1128   TSP-1 type 1 repeat  
  0.000000000732   1015-1070   TSP-1 type 1 repeat  
  0.00000000196   953-1015   TSP-1 type 1 repeat  
  0.00000000667   1414-1468   TSP-1 type 1 repeat  
  0.00000000824   1148-1200   TSP-1 type 1 repeat  
  0.0000000262   1297-1353   TSP-1 type 1 repeat  
  0.0000000405   1651-1704   TSP-1 type 1 repeat  
  0.0000000419   1467-1524   TSP-1 type 1 repeat  
  0.00000837   842-895   TSP-1 type 1 repeat  
  0.0000327   1520-1579   TSP-1 type 1 repeat  
  0.000196   1586-1633   TSP-1 type 1 repeat  
ENSTGUP00000006609   0.00000249   171-215   TSP-1 type 1 repeat  
ENSTGUP00000007065   0.0000732   104-156   TSP-1 type 1 repeat  
ENSTGUP00000007914   4.32e-17   749-807   TSP-1 type 1 repeat  
  6.02e-16   695-746   TSP-1 type 1 repeat  
  0.00000000000000432   507-557   TSP-1 type 1 repeat  
  0.000000000484   562-613   TSP-1 type 1 repeat  
  0.000000157   808-853   TSP-1 type 1 repeat  
  0.000000275   451-504   TSP-1 type 1 repeat  
ENSTGUP00000008071   0.0000000000798   684-736   TSP-1 type 1 repeat  
  0.00000000051   397-457   TSP-1 type 1 repeat  
  0.00000000471   452-512   TSP-1 type 1 repeat  
  0.0000000051   549-603   TSP-1 type 1 repeat  
  0.00000000536   791-857   TSP-1 type 1 repeat  
  0.00000000876   1407-1464   TSP-1 type 1 repeat  
  0.0000000129   739-796   TSP-1 type 1 repeat  
  0.0000000366   53-101   TSP-1 type 1 repeat  
  0.000000114   1458-1521   TSP-1 type 1 repeat  
  0.000000471   1584-1640   TSP-1 type 1 repeat  
  0.000000824   319-379   TSP-1 type 1 repeat  
  0.0000131   626-681   TSP-1 type 1 repeat  
ENSTGUP00000009067   0.0000000000000209   394-444   TSP-1 type 1 repeat  
  0.000000000209   823-880   TSP-1 type 1 repeat  
  0.00000000301   717-773   TSP-1 type 1 repeat  
  0.0000000128   776-819   TSP-1 type 1 repeat  
  0.0000000536   654-713   TSP-1 type 1 repeat  
ENSTGUP00000009139   0.00000000000314   50-98   TSP-1 type 1 repeat  
ENSTGUP00000009374   0.00000000222   28-79   TSP-1 type 1 repeat  
ENSTGUP00000009471   0.00000000000000353   558-615   TSP-1 type 1 repeat  
  0.000000000157   1100-1152   TSP-1 type 1 repeat  
  0.000000000497   906-963   TSP-1 type 1 repeat  
  0.00000000353   964-1023   TSP-1 type 1 repeat  
  0.00000068   1028-1090   TSP-1 type 1 repeat  
  0.00000222   849-903   TSP-1 type 1 repeat  
ENSTGUP00000009839   0.0000000000000366   550-606   TSP-1 type 1 repeat  
  0.0000000000275   1354-1411   TSP-1 type 1 repeat  
  0.0000000000314   1149-1206   TSP-1 type 1 repeat  
  0.0000000000929   1073-1132   TSP-1 type 1 repeat  
  0.000000000235   1204-1262   TSP-1 type 1 repeat  
  0.00000000131   1301-1355   TSP-1 type 1 repeat  
  0.00000000157   1654-1702   TSP-1 type 1 repeat  
  0.00000000235   1588-1648   TSP-1 type 1 repeat  
  0.00000000497   1416-1470   TSP-1 type 1 repeat  
  0.00000000811   956-1017   TSP-1 type 1 repeat  
  0.0000000183   1468-1526   TSP-1 type 1 repeat  
  0.000000262   1021-1075   TSP-1 type 1 repeat  
  0.0000157   841-897   TSP-1 type 1 repeat  
  0.0000327   1527-1585   TSP-1 type 1 repeat  
  0.00222   903-957   TSP-1 type 1 repeat  
ENSTGUP00000009905   0.00000000209   514-559   TSP-1 type 1 repeat  
  0.0000115   12-59   TSP-1 type 1 repeat  
ENSTGUP00000009932   0.0000000000249   496-542   TSP-1 type 1 repeat  
  0.00000183   19-67   TSP-1 type 1 repeat  
ENSTGUP00000010031   1.44e-16   498-549   TSP-1 type 1 repeat  
  0.00000000000000575   442-491   TSP-1 type 1 repeat  
  0.000000000111   387-430   TSP-1 type 1 repeat  
ENSTGUP00000010127   0.000000000968   1063-1123   TSP-1 type 1 repeat  
  0.00000000432   329-387   TSP-1 type 1 repeat  
  0.0000000301   953-1016   TSP-1 type 1 repeat  
  0.0000000693   909-958   TSP-1 type 1 repeat  
  0.000000131   1011-1065   TSP-1 type 1 repeat  
  0.000000222   45-100   TSP-1 type 1 repeat  
  0.00000112   448-500   TSP-1 type 1 repeat  
  0.00000249   385-449   TSP-1 type 1 repeat  
ENSTGUP00000011002   0.000000222   264-310   TSP-1 type 1 repeat  
ENSTGUP00000011579   0.0000000000235   8-59   TSP-1 type 1 repeat  
  0.000000000034   345-403   TSP-1 type 1 repeat  
  0.0000000000484   402-459   TSP-1 type 1 repeat  
  0.00000000719   464-520   TSP-1 type 1 repeat  
  0.00000523   291-339   TSP-1 type 1 repeat  
ENSTGUP00000011866   0.000000000615   2-50   TSP-1 type 1 repeat  
ENSTGUP00000011980   0.00000124   191-236   TSP-1 type 1 repeat  
ENSTGUP00000011992   4.05e-16   494-552   TSP-1 type 1 repeat  
  8.5e-16   441-490   TSP-1 type 1 repeat  
  0.0000000000497   384-434   TSP-1 type 1 repeat  
ENSTGUP00000012128   0.000000641   114-169   TSP-1 type 1 repeat  
ENSTGUP00000012185   0.0000000000445   366-429   TSP-1 type 1 repeat  
  0.000000000196   1015-1072   TSP-1 type 1 repeat  
  0.000000000732   766-823   TSP-1 type 1 repeat  
  0.0000000602   101-157   TSP-1 type 1 repeat  
  0.000000235   822-893   TSP-1 type 1 repeat  
  0.000000471   1137-1201   TSP-1 type 1 repeat  
  0.00000131   898-946   TSP-1 type 1 repeat  
  0.00000222   506-559   TSP-1 type 1 repeat  
  0.0000112   432-501   TSP-1 type 1 repeat  
  0.0000379   1068-1120   TSP-1 type 1 repeat  
  0.0000889   565-636   TSP-1 type 1 repeat  
  0.000249   690-765   TSP-1 type 1 repeat  
  0.000275   166-248   TSP-1 type 1 repeat  
  0.000366   948-998   TSP-1 type 1 repeat  
  0.000523   253-306   TSP-1 type 1 repeat  
  0.00942   637-692   TSP-1 type 1 repeat  
ENSTGUP00000012356   0.000000419   183-227   TSP-1 type 1 repeat  
ENSTGUP00000012394   0.0000000000955   343-393   TSP-1 type 1 repeat  
ENSTGUP00000012578   0.00000249   113-165   TSP-1 type 1 repeat  
ENSTGUP00000012693   0.00000017   219-258   TSP-1 type 1 repeat  
ENSTGUP00000012713   0.000017   143-186   TSP-1 type 1 repeat  
ENSTGUP00000012943   0.000000275   212-257   TSP-1 type 1 repeat  
ENSTGUP00000013098   0.0000000000000523   361-417   TSP-1 type 1 repeat  
  0.00000000000101   423-471   TSP-1 type 1 repeat  
  0.00000000000116   475-530   TSP-1 type 1 repeat  
  0.0000000000222   309-358   TSP-1 type 1 repeat  
  0.0000000000392   219-271   TSP-1 type 1 repeat  
ENSTGUP00000013132   0.0000000000000103   341-396   TSP-1 type 1 repeat  
  0.000000000000262   396-451   TSP-1 type 1 repeat  
  0.0000000000327   293-336   TSP-1 type 1 repeat  
  0.00000000128   451-506   TSP-1 type 1 repeat  
ENSTGUP00000013883   3.53e-16   473-529   TSP-1 type 1 repeat  
  0.000000000288   823-885   TSP-1 type 1 repeat  
  0.0000000106   775-828   TSP-1 type 1 repeat  
ENSTGUP00000013885   0.00000000000000432   427-481   TSP-1 type 1 repeat  
  0.0000000432   738-790   TSP-1 type 1 repeat  
ENSTGUP00000014767   0.00000000051   73-137   TSP-1 type 1 repeat  
  0.00000128   14-79   TSP-1 type 1 repeat  
ENSTGUP00000015034   0.0000000000144   128-180   TSP-1 type 1 repeat  
  0.0000000589   56-118   TSP-1 type 1 repeat  
  0.000000314   1-51   TSP-1 type 1 repeat  
ENSTGUP00000015092   0.0000000000017   324-376   TSP-1 type 1 repeat  
ENSTGUP00000015530   0.0000000106   1-47   TSP-1 type 1 repeat  
  0.0000000183   46-74   TSP-1 type 1 repeat  
ENSTGUP00000016321   7.72e-16   62-113   TSP-1 type 1 repeat  
  0.00000000131   116-157   TSP-1 type 1 repeat  
ENSTGUP00000016450   0.000000000000068   4-59   TSP-1 type 1 repeat  
  0.00000000000772   61-109   TSP-1 type 1 repeat  
ENSTGUP00000016958   0.00000000000000249   265-315   TSP-1 type 1 repeat  
  0.0000000000994   683-732   TSP-1 type 1 repeat  
  0.00000000798   559-618   TSP-1 type 1 repeat  
  0.0000000111   622-680   TSP-1 type 1 repeat  
ENSTGUP00000017663   0.00000000196   568-636   TSP-1 type 1 repeat  
  0.00000000732   2-57   TSP-1 type 1 repeat  
  0.0000000196   692-745   TSP-1 type 1 repeat  
  0.0000000249   745-805   TSP-1 type 1 repeat  
  0.000000196   800-858   TSP-1 type 1 repeat  
  0.0000017   638-688   TSP-1 type 1 repeat  
  0.00000615   515-573   TSP-1 type 1 repeat  
 
Weak hits:
ENSTGUP00000000755   0.00178   169-214   TSP-1 type 1 repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   291184 291184
No Yes Homo sapiens 76_38 Human 611 154
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 244 62
No Yes Gorilla gorilla 76_3.1 Western gorilla 316 84
No Yes Pongo abelii 76_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 247 61
No Yes Papio anubis 76 Olive baboon 275 67
No Yes Macaca mulatta 76_1 Rhesus monkey 347 97
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 590 144
No Yes Otolemur garnettii 76_3 Small-eared galago 254 67
No Yes Microcebus murinus 76_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 76_5.0 Norway rat 277 73
No Yes Mus musculus 76_38 House mouse 545 129
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 307 68
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 241 62
No Yes Cavia porcellus 76_3 Domestic guinea pig 276 65
No Yes Oryctolagus cuniculus 76_2 Rabbit 262 59
No Yes Ochotona princeps 76 American pika 204 59
No Yes Tupaia belangeri 76 Northern tree shrew 151 54
No Yes Sus scrofa 76_10.2 Pig 270 76
No Yes Bos taurus 76_3.1 Cattle 315 70
No Yes Ovis aries 76_3.1 Sheep 253 68
No Yes Vicugna pacos 76_1 Alpaca 123 34
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 76_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 76_1 Giant panda 308 77
No Yes Canis familiaris 76_3.1 Dog 369 81
No Yes Felis catus 76_6.2 Domestic cat 266 65
No Yes Equus caballus 76_2 Horse 351 75
No Yes Myotis lucifugus 76_2.0 Little brown bat 222 57
No Yes Pteropus vampyrus 76_1 Large flying fox 218 60
No Yes Sorex araneus 76_1 European shrew 127 40
No Yes Erinaceus europaeus 76 Western European hedgehog 145 47
No Yes Procavia capensis 76_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 76_3 African savanna elephant 297 87
No Yes Echinops telfairi 76 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 278 72
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 298 79
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 259 64
No Yes Ornithorhynchus anatinus 76_5 Platypus 237 77
No Yes Saccoglossus kowalevskii v3.0   431 141
No Yes Petromyzon marinus 76_7.0 Sea lamprey 192 50
No Yes Meleagris gallopavo 76_2 Turkey 261 75
No Yes Gallus gallus 76_4 Chicken 273 64
No Yes Anas platyrhynchos 76_1.0 Mallard 236 61
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 256 67
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 236 61
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 285 79
No Yes Anolis carolinensis 76_2.0 Green anole 285 67
No Yes Xenopus laevis African clawed frog 113 56
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 302 74
No Yes Latimeria chalumnae 76_1 Coelacanth 302 94
No Yes Lepisosteus oculatus 76 Spotted gar 422 94
No Yes Gadus morhua 76_1 Atlantic cod 275 80
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 317 90
No Yes Takifugu rubripes 76_4 Torafugu 1009 288
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 355 102
No Yes Oryzias latipes 76_1 Japanese medaka 332 91
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 311 81
No Yes Poecilia formosa 76 Amazon molly 317 83
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 460 112
No Yes Astyanax mexicanus 76 Mexican tetra 298 88
No Yes Danio rerio 76_9 Zebrafish 461 131
No Yes Oikopleura dioica   363 99
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 407 115
No Yes Ciona intestinalis 76 Vase tunicate 356 104
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 260 75
No Yes Adineta vaga   128 25
No Yes Octopus bimaculoides 280   209 67
No Yes Crassostrea gigas 22 Pacific oyster 404 118
No Yes Lottia gigantea Owl limpet 171 61
No Yes Helobdella robusta   108 29
No Yes Capitella sp. I   195 90
No Yes Danaus plexippus OGS1.0 Monarch butterfly 60 29
No Yes Heliconius melpomene Postman butterfly 45 23
No Yes Bombyx mori Domestic silkworm 37 19
No Yes Nasonia vitripennis Jewel wasp 56 16
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 183 61
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 62 19
No Yes Linepithema humile v1.1 Argentine ant 67 25
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 44 23
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 64 20
No Yes Atta cephalotes v1.1   64 24
No Yes Camponotus floridanus v3.3 Florida carpenter ant 67 18
No Yes Lucilia cuprina Australian sheep blowfly 53 15
No Yes Drosophila grimshawi 1.3   54 16
No Yes Drosophila willistoni 1.3   54 15
No Yes Drosophila pseudoobscura 2.13   52 15
No Yes Drosophila persimilis 1.3   48 15
No Yes Drosophila suzukii   50 14
No Yes Drosophila yakuba 1.3   51 16
No Yes Drosophila simulans 1.3   49 16
No Yes Drosophila sechellia 1.3   47 13
No Yes Drosophila melanogaster 76_5 Fruit fly 130 28
No Yes Drosophila erecta 1.3   52 16
No Yes Drosophila ananassae 1.3   55 17
No Yes Drosophila virilis 1.2   49 15
No Yes Drosophila mojavensis 1.3   49 14
No Yes Megaselia scalaris 22   14 7
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 48 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 56 20
No Yes Anopheles darlingi 22 American malaria mosquito 34 15
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 14
No Yes Tribolium castaneum 3.0 Red flour beetle 56 15
No Yes Pediculus humanus corporis (Early assembly) Human body louse 52 16
No Yes Acyrthosiphon pisum Pea aphid 44 8
No Yes Rhodnius prolixus 22   40 14
No Yes Daphnia pulex Common water flea 62 15
No Yes Strigamia maritima 22   77 21
No Yes Sarcoptes scabiei   31 8
No Yes Tetranychus urticae Two-spotted spider mite 20 8
No Yes Ixodes scapularis (Preliminary) Black-legged tick 42 10
No Yes Pristionchus pacificus   52 21
No Yes Meloidogyne incognita Southern root-knot nematode 67 20
No Yes Meloidogyne hapla   40 10
No Yes Onchocerca volvulus 22   72 22
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 106 29
No Yes Caenorhabditis japonica   82 27
No Yes Caenorhabditis brenneri   129 38
No Yes Caenorhabditis remanei   96 33
No Yes Caenorhabditis elegans 76_235 Roundworm 198 54
No Yes Caenorhabditis briggsae 2   94 32
No Yes Trichinella spiralis 22   74 25
No Yes Hymenolepis microstoma   28 13
No Yes Echinococcus multilocularis   31 15
No Yes Echinococcus granulosus   29 14
No Yes Taenia solium Pork tapeworm 30 18
No Yes Schistosoma mansoni   31 15
No Yes Mnemiopsis leidyi Sea walnut 94 47
No Yes Thelohanellus kitauei   4 3
No Yes Acropora digitifera v1.0   291 127
No Yes Nematostella vectensis 1.0 Starlet sea anemone 295 125
No Yes Hydra vulgaris   345 115
No Yes Amphimedon queenslandica   44 18
No Yes Trichoplax adhaerens   35 9
No Yes Proterospongia sp. ATCC 50818   15 10
No Yes Monosiga brevicollis   6 3
No Yes Sphaeroforma arctica JP610   22 12
No Yes Capsaspora owczarzaki ATCC 30864   50 9
No Yes Dictyostelium discoideum   2 1
No Yes Dictyostelium purpureum   5 4
No Yes Selaginella moellendorffii   6 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 3 3
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 3
No Yes Chlorella variabilis sp. NC64A   10 3
No Yes Chlorella vulgaris   5 2
No Yes Ostreococcus sp. RCC809   8 5
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   10 4
No Yes Micromonas sp. RCC299   4 2
No Yes Micromonas pusilla CCMP1545 v3.0   8 4
No Yes Thecamonas trahens ATCC 50062   4 1
No Yes Bigelowiella natans CCMP2755 22   14 7
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium iwayamai DAOM BR242034 22   31 4
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   46 5
No Yes Pythium aphanidermatum DAOM BR444 22   42 3
No Yes Pythium irregulare DAOM BR486 22   36 3
No Yes Pythium vexans DAOM BR484 22   28 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 40 3
No Yes Phytophthora sojae 1.1   79 7
No Yes Phytophthora infestans T30-4   25 2
No Yes Phytophthora capsici   24 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Cryptosporidium hominis   17 7
No Yes Cryptosporidium muris   31 10
No Yes Cryptosporidium parvum Iowa II   30 10
No Yes Neospora caninum   30 8
No Yes Toxoplasma gondii VEG   24 6
No Yes Toxoplasma gondii ME49   24 6
No Yes Toxoplasma gondii GT1   25 6
No Yes Babesia bovis T2Bo   8 8
No Yes Theileria parva   4 4
No Yes Theileria annulata   4 4
No Yes Plasmodium falciparum 3D7   10 8
No Yes Plasmodium vivax SaI-1 7.0   11 9
No Yes Plasmodium knowlesi strain H   7 7
No Yes Plasmodium yoelii ssp. yoelii 1   10 7
No Yes Plasmodium chabaudi   9 6
No Yes Plasmodium berghei ANKA   10 7
No Yes Symbiodinium minutum clade B1 v1.2   473 75
No Yes Guillardia theta CCMP2712 v1.0   14 5
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfatibacillum alkenivorans AK-01   7 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 283 84
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 122 28
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 55 17
No Yes Ascaris suum Victoria/Ghent Pig roundworm 77 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 140 44
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Neospora caninum Nc-Liverpool 6.2   30 8
No Yes Plasmodium falciparum HB3   10 8
No Yes Plasmodium falciparum Dd2   8 6
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio exovorus JSS   5 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 633 165
No Yes Homo sapiens (NCBI version) Human 341 81
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 265 63
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 80 27
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 77 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 66 19
No Yes Homo sapiens 69_37 Human 272 67
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 233 59
No Yes Gorilla gorilla 69_3.1 Western gorilla 253 63
No Yes Pongo abelii 69_2 Sumatran orangutan 227 60
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 243 62
No Yes Macaca mulatta 69_1 Rhesus monkey 236 63
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 270 64
No Yes Otolemur garnettii 69_3 Small-eared galago 252 66
No Yes Microcebus murinus 69_1 Gray mouse lemur 186 57
No Yes Rattus norvegicus 69_3.4 Norway rat 243 58
No Yes Mus musculus 69_38 House mouse 286 64
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 191 56
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 244 62
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 60
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 57
No Yes Ochotona princeps 69 American pika 204 59
No Yes Tupaia belangeri 69 Northern tree shrew 151 54
No Yes Sus scrofa 69_10.2 Pig 213 64
No Yes Bos taurus 69_3.1 Cattle 275 62
No Yes Vicugna pacos 69_1 Alpaca 123 34
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 223 61
No Yes Mustela putorius furo 69_1.0 Domestic ferret 276 63
No Yes Ailuropoda melanoleuca 69_1 Giant panda 270 67
No Yes Canis familiaris 69_3.1 Dog 258 60
No Yes Felis catus 69 Domestic cat 155 52
No Yes Equus caballus 69_2 Horse 255 61
No Yes Myotis lucifugus 69_2.0 Little brown bat 218 56
No Yes Pteropus vampyrus 69_1 Large flying fox 218 60
No Yes Sorex araneus 69_1 European shrew 127 40
No Yes Erinaceus europaeus 69 Western European hedgehog 145 47
No Yes Procavia capensis 69_1 Cape rock hyrax 192 62
No Yes Loxodonta africana 69_3 African savanna elephant 221 64
No Yes Echinops telfairi 69 Small Madagascar hedgehog 175 60
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 159 52
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 127 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 187 58
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 244 64
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 252 61
No Yes Ornithorhynchus anatinus 69_5 Platypus 207 69
No Yes Petromyzon marinus 69_7.0 Sea lamprey 130 39
No Yes Meleagris gallopavo 69_2 Turkey 238 67
No Yes Gallus gallus 69_2 Chicken 240 63
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 253 65
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 243 64
No Yes Anolis carolinensis 69_2.0 Green anole 264 66
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 274 66
No Yes Latimeria chalumnae 69_1 Coelacanth 253 74
No Yes Gadus morhua 69_1 Atlantic cod 263 74
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 240 69
No Yes Takifugu rubripes 69_4 Torafugu 284 74
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 307 79
No Yes Oryzias latipes 69_1 Japanese medaka 267 69
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 311 81
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 330 79
No Yes Danio rerio 69_9 Zebrafish 332 90
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 200 56
No Yes Ciona intestinalis 69 Vase tunicate 333 99
No Yes Drosophila melanogaster 69_5 Fruit fly 52 15
No Yes Caenorhabditis elegans 69_215 Roundworm 102 34
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes NCBI 2017_08 genome   129968 31969
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   277 136
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   9521 2746
No Yes Uniprot 2018_03 genome   78679 23035
No Yes Global Ocean Sampling Expedition (GOS)   593 226
No Yes PDB chains (SCOP 1.75) (PDB)   2 1
No Yes Protein Data Bank (all PDB sequenc)   122 87
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   310 101

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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