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Fibrinogen C-terminal domain-like superfamily domain assignments
in
Daphnia pulex

Assignment details

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Daphnia pulex has 42 significant domains in 40 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Dappu1|100997|fgenesh1_pg.C_scaffold_16000242   0.0000523   21-71   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101374|fgenesh1_pg.C_scaffold_17000325   0.00000957   137-188   Fibrinogen C-terminal domain-like  
  0.00359   341-379   Fibrinogen C-terminal domain-like  
jgi|Dappu1|103449|fgenesh1_pg.C_scaffold_25000206   1.83e-18   38-97   Fibrinogen C-terminal domain-like  
jgi|Dappu1|103450|fgenesh1_pg.C_scaffold_25000207   9.42e-35   560-677   Fibrinogen C-terminal domain-like  
jgi|Dappu1|106920|fgenesh1_pg.C_scaffold_46000021   0.0000359   107-150   Fibrinogen C-terminal domain-like  
  0.0314   314-357   Fibrinogen C-terminal domain-like  
jgi|Dappu1|110157|fgenesh1_pg.C_scaffold_72000024   0.0000115   130-175   Fibrinogen C-terminal domain-like  
  0.0194   333-371   Fibrinogen C-terminal domain-like  
jgi|Dappu1|114783|fgenesh1_pg.C_scaffold_138000040   0.00000299   106-153   Fibrinogen C-terminal domain-like  
  0.00254   312-349   Fibrinogen C-terminal domain-like  
jgi|Dappu1|114980|fgenesh1_pg.C_scaffold_142000067   5.63e-74   249-456   Fibrinogen C-terminal domain-like  
jgi|Dappu1|118473|fgenesh1_pg.C_scaffold_353000003   0.00000748   40-85   Fibrinogen C-terminal domain-like  
jgi|Dappu1|120497|fgenesh1_pg.C_scaffold_1512000001   0.00000837   63-112   Fibrinogen C-terminal domain-like  
jgi|Dappu1|191595|estExt_Genewise1Plus.C_40161   1.96e-77   556-781   Fibrinogen C-terminal domain-like  
jgi|Dappu1|195986|estExt_Genewise1Plus.C_200070   5.63e-75   84-316   Fibrinogen C-terminal domain-like  
jgi|Dappu1|200426|estExt_Genewise1Plus.C_660033   0.0000133   126-169   Fibrinogen C-terminal domain-like  
jgi|Dappu1|206258|estExt_Genewise1.C_30271   9.03e-83   328-550   Fibrinogen C-terminal domain-like  
jgi|Dappu1|223070|estExt_fgenesh1_pg.C_130116   0.00000778   84-130   Fibrinogen C-terminal domain-like  
  0.00269   170-207   Fibrinogen C-terminal domain-like  
jgi|Dappu1|224392|estExt_fgenesh1_pg.C_230097   0.0000179   332-371   Fibrinogen C-terminal domain-like  
  0.0000718   113-156   Fibrinogen C-terminal domain-like  
jgi|Dappu1|224393|estExt_fgenesh1_pg.C_230099   0.0000179   328-369   Fibrinogen C-terminal domain-like  
jgi|Dappu1|224775|estExt_fgenesh1_pg.C_250281   0.0000508   106-148   Fibrinogen C-terminal domain-like  
  0.00508   300-337   Fibrinogen C-terminal domain-like  
jgi|Dappu1|224995|estExt_fgenesh1_pg.C_290017   0.00000493   116-173   Fibrinogen C-terminal domain-like  
  0.0147   320-357   Fibrinogen C-terminal domain-like  
jgi|Dappu1|229332|estExt_fgenesh1_pg.C_1730018   0.0000102   63-107   Fibrinogen C-terminal domain-like  
  0.00209   316-354   Fibrinogen C-terminal domain-like  
jgi|Dappu1|233432|SNAP_00001490   0.0000209   41-78   Fibrinogen C-terminal domain-like  
  0.0000404   136-183   Fibrinogen C-terminal domain-like  
jgi|Dappu1|233433|SNAP_00001491   0.0000016   107-172   Fibrinogen C-terminal domain-like  
jgi|Dappu1|241573|SNAP_00009631   0.0000164   99-149   Fibrinogen C-terminal domain-like  
jgi|Dappu1|241867|SNAP_00009925   0.00000299   69-117   Fibrinogen C-terminal domain-like  
  0.00129   252-290   Fibrinogen C-terminal domain-like  
jgi|Dappu1|246486|SNAP_00014544   0.00000767   72-161   Fibrinogen C-terminal domain-like  
  0.00109   237-274   Fibrinogen C-terminal domain-like  
  0.00643   297-339   Fibrinogen C-terminal domain-like  
jgi|Dappu1|248859|SNAP_00016917   0.0000691   50-89   Fibrinogen C-terminal domain-like  
jgi|Dappu1|248880|SNAP_00016938   0.00000963   57-104   Fibrinogen C-terminal domain-like  
jgi|Dappu1|252960|SNAP_00021018   0.000000508   107-157   Fibrinogen C-terminal domain-like  
jgi|Dappu1|257184|SNAP_00025242   0.00000404   98-147   Fibrinogen C-terminal domain-like  
  0.00434   303-346   Fibrinogen C-terminal domain-like  
jgi|Dappu1|257243|SNAP_00025301   0.0000335   68-115   Fibrinogen C-terminal domain-like  
jgi|Dappu1|257264|SNAP_00025322   0.00000344   2-44   Fibrinogen C-terminal domain-like  
  0.0123   201-240   Fibrinogen C-terminal domain-like  
jgi|Dappu1|303745|PASA_GEN_2300109   0.00000329   308-351   Fibrinogen C-terminal domain-like  
  0.000454   99-142   Fibrinogen C-terminal domain-like  
jgi|Dappu1|307466|PASA_GEN_6300061   0.000000748   91-138   Fibrinogen C-terminal domain-like  
  0.00194   295-337   Fibrinogen C-terminal domain-like  
jgi|Dappu1|309407|PASA_GEN_9800007   0.0000224   102-151   Fibrinogen C-terminal domain-like  
jgi|Dappu1|310805|NCBI_GNO_0300156   0.00000254   123-169   Fibrinogen C-terminal domain-like  
  0.000763   327-390   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316232|NCBI_GNO_1700026   0.00000733   129-174   Fibrinogen C-terminal domain-like  
  0.00127   326-372   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316370|NCBI_GNO_1700165   0.00000718   186-235   Fibrinogen C-terminal domain-like  
  0.00284   415-458   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316536|NCBI_GNO_1700331   0.00000254   163-221   Fibrinogen C-terminal domain-like  
  0.000688   371-418   Fibrinogen C-terminal domain-like  
jgi|Dappu1|327477|NCBI_GNO_9100051   0.0000164   64-108   Fibrinogen C-terminal domain-like  
jgi|Dappu1|98763|fgenesh1_pg.C_scaffold_10000186   0.0000239   56-102   Fibrinogen C-terminal domain-like  
  0.0136   261-299   Fibrinogen C-terminal domain-like  
 
Weak hits:
jgi|Dappu1|101053|fgenesh1_pg.C_scaffold_17000004   0.0194   476-514   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101072|fgenesh1_pg.C_scaffold_17000023   0.00837   142-184   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101175|fgenesh1_pg.C_scaffold_17000126   0.00454   106-144   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101186|fgenesh1_pg.C_scaffold_17000137   0.00179   93-135   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101227|fgenesh1_pg.C_scaffold_17000178   0.0733   701-739   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101230|fgenesh1_pg.C_scaffold_17000181   0.0384   571-637   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101288|fgenesh1_pg.C_scaffold_17000239   0.0977   714-774   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101349|fgenesh1_pg.C_scaffold_17000300   0.0366   536-589   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101475|fgenesh1_pg.C_scaffold_18000039   0.000493   94-138   Fibrinogen C-terminal domain-like  
  0.00957   298-334   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101616|fgenesh1_pg.C_scaffold_18000180   0.000359   54-105   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101617|fgenesh1_pg.C_scaffold_18000181   0.00464   97-141   Fibrinogen C-terminal domain-like  
  0.00673   148-191   Fibrinogen C-terminal domain-like  
jgi|Dappu1|101703|fgenesh1_pg.C_scaffold_18000267   0.000224   340-380   Fibrinogen C-terminal domain-like  
jgi|Dappu1|103274|fgenesh1_pg.C_scaffold_25000031   0.00209   736-780   Fibrinogen C-terminal domain-like  
jgi|Dappu1|105408|fgenesh1_pg.C_scaffold_36000109   0.00314   107-149   Fibrinogen C-terminal domain-like  
jgi|Dappu1|106904|fgenesh1_pg.C_scaffold_46000005   0.00329   138-175   Fibrinogen C-terminal domain-like  
jgi|Dappu1|106993|fgenesh1_pg.C_scaffold_46000094   0.0488   122-157   Fibrinogen C-terminal domain-like  
jgi|Dappu1|106994|fgenesh1_pg.C_scaffold_46000095   0.00299   128-168   Fibrinogen C-terminal domain-like  
jgi|Dappu1|110273|fgenesh1_pg.C_scaffold_72000140   0.000897   97-138   Fibrinogen C-terminal domain-like  
  0.00194   296-334   Fibrinogen C-terminal domain-like  
jgi|Dappu1|112778|fgenesh1_pg.C_scaffold_100000022   0.00152   148-188   Fibrinogen C-terminal domain-like  
jgi|Dappu1|112805|fgenesh1_pg.C_scaffold_100000049   0.000449   128-175   Fibrinogen C-terminal domain-like  
  0.00643   332-368   Fibrinogen C-terminal domain-like  
jgi|Dappu1|115861|fgenesh1_pg.C_scaffold_167000022   0.0157   98-133   Fibrinogen C-terminal domain-like  
jgi|Dappu1|116078|fgenesh1_pg.C_scaffold_174000007   0.00553   456-493   Fibrinogen C-terminal domain-like  
jgi|Dappu1|117183|fgenesh1_pg.C_scaffold_219000035   0.0015   2-36   Fibrinogen C-terminal domain-like  
jgi|Dappu1|120386|fgenesh1_pg.C_scaffold_1411000002   0.00959   95-133   Fibrinogen C-terminal domain-like  
jgi|Dappu1|120794|fgenesh1_pg.C_scaffold_1837000002   0.000703   49-91   Fibrinogen C-terminal domain-like  
jgi|Dappu1|221816|estExt_fgenesh1_pg.C_60406   0.00434   106-145   Fibrinogen C-terminal domain-like  
jgi|Dappu1|223598|estExt_fgenesh1_pg.C_170024   0.00114   95-150   Fibrinogen C-terminal domain-like  
jgi|Dappu1|223679|estExt_fgenesh1_pg.C_170214   0.000613   5-76   Fibrinogen C-terminal domain-like  
jgi|Dappu1|223838|estExt_fgenesh1_pg.C_180179   0.00628   114-152   Fibrinogen C-terminal domain-like  
jgi|Dappu1|223872|estExt_fgenesh1_pg.C_180266   0.000314   295-335   Fibrinogen C-terminal domain-like  
jgi|Dappu1|224885|estExt_fgenesh1_pg.C_280045   0.000374   67-112   Fibrinogen C-terminal domain-like  
  0.00138   270-307   Fibrinogen C-terminal domain-like  
jgi|Dappu1|225479|estExt_fgenesh1_pg.C_360130   0.000164   88-134   Fibrinogen C-terminal domain-like  
jgi|Dappu1|225483|estExt_fgenesh1_pg.C_360136   0.000508   120-158   Fibrinogen C-terminal domain-like  
jgi|Dappu1|226568|estExt_fgenesh1_pg.C_590008   0.000957   37-75   Fibrinogen C-terminal domain-like  
jgi|Dappu1|227614|estExt_fgenesh1_pg.C_790096   0.00194   99-145   Fibrinogen C-terminal domain-like  
  0.00643   325-368   Fibrinogen C-terminal domain-like  
jgi|Dappu1|228384|estExt_fgenesh1_pg.C_1000060   0.00299   100-147   Fibrinogen C-terminal domain-like  
jgi|Dappu1|228386|estExt_fgenesh1_pg.C_1000063   0.00135   132-195   Fibrinogen C-terminal domain-like  
jgi|Dappu1|229321|estExt_fgenesh1_pg.C_1730001   0.00297   260-303   Fibrinogen C-terminal domain-like  
jgi|Dappu1|229419|estExt_fgenesh1_pg.C_1830014   0.0593   341-380   Fibrinogen C-terminal domain-like  
jgi|Dappu1|235623|SNAP_00003681   0.00523   212-248   Fibrinogen C-terminal domain-like  
jgi|Dappu1|237752|SNAP_00005810   0.00224   182-223   Fibrinogen C-terminal domain-like  
  0.0733   307-347   Fibrinogen C-terminal domain-like  
jgi|Dappu1|240822|SNAP_00008880   0.00419   143-182   Fibrinogen C-terminal domain-like  
jgi|Dappu1|240830|SNAP_00008888   0.00523   99-135   Fibrinogen C-terminal domain-like  
jgi|Dappu1|240849|SNAP_00008907   0.0628   346-396   Fibrinogen C-terminal domain-like  
jgi|Dappu1|241138|SNAP_00009196   0.000179   57-101   Fibrinogen C-terminal domain-like  
  0.0449   261-297   Fibrinogen C-terminal domain-like  
jgi|Dappu1|241326|SNAP_00009384   0.0138   99-137   Fibrinogen C-terminal domain-like  
jgi|Dappu1|241333|SNAP_00009391   0.000374   72-140   Fibrinogen C-terminal domain-like  
jgi|Dappu1|244645|SNAP_00012703   0.0349   71-111   Fibrinogen C-terminal domain-like  
jgi|Dappu1|244781|SNAP_00012839   0.0129   58-105   Fibrinogen C-terminal domain-like  
jgi|Dappu1|246062|SNAP_00014120   0.0471   2-49   Fibrinogen C-terminal domain-like  
jgi|Dappu1|246134|SNAP_00014192   0.00401   47-84   Fibrinogen C-terminal domain-like  
jgi|Dappu1|246517|SNAP_00014575   0.00164   2-45   Fibrinogen C-terminal domain-like  
jgi|Dappu1|250255|SNAP_00018313   0.00957   196-231   Fibrinogen C-terminal domain-like  
jgi|Dappu1|252104|SNAP_00020162   0.0152   467-518   Fibrinogen C-terminal domain-like  
jgi|Dappu1|253847|SNAP_00021905   0.000209   84-126   Fibrinogen C-terminal domain-like  
jgi|Dappu1|254743|SNAP_00022801   0.000102   53-96   Fibrinogen C-terminal domain-like  
  0.00927   307-344   Fibrinogen C-terminal domain-like  
jgi|Dappu1|256209|SNAP_00024267   0.000763   2-41   Fibrinogen C-terminal domain-like  
jgi|Dappu1|256561|SNAP_00024619   0.0767   107-142   Fibrinogen C-terminal domain-like  
jgi|Dappu1|257272|SNAP_00025330   0.1   497-534   Fibrinogen C-terminal domain-like  
jgi|Dappu1|259185|SNAP_00027243   0.00994   29-64   Fibrinogen C-terminal domain-like  
jgi|Dappu1|259196|SNAP_00027254   0.00715   110-148   Fibrinogen C-terminal domain-like  
jgi|Dappu1|259214|SNAP_00027272   0.0141   72-110   Fibrinogen C-terminal domain-like  
jgi|Dappu1|259215|SNAP_00027273   0.0314   2-39   Fibrinogen C-terminal domain-like  
jgi|Dappu1|262627|SNAP_00030685   0.00164   141-193   Fibrinogen C-terminal domain-like  
jgi|Dappu1|265459|SNAP_00033517   0.000613   17-54   Fibrinogen C-terminal domain-like  
jgi|Dappu1|274697|SNAP_00042755   0.0889   2-56   Fibrinogen C-terminal domain-like  
jgi|Dappu1|302539|PASA_GEN_1800041   0.0138   96-136   Fibrinogen C-terminal domain-like  
jgi|Dappu1|307295|PASA_GEN_6100067   0.0387   1092-1138   Fibrinogen C-terminal domain-like  
jgi|Dappu1|312486|NCBI_GNO_0600285   0.0366   469-514   Fibrinogen C-terminal domain-like  
jgi|Dappu1|312571|NCBI_GNO_0600370   0.00613   184-221   Fibrinogen C-terminal domain-like  
jgi|Dappu1|314880|NCBI_GNO_1200305   0.000284   36-90   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316218|NCBI_GNO_1700012   0.0227   2-60   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316257|NCBI_GNO_1700051   0.00733   134-172   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316307|NCBI_GNO_1700101   0.00733   123-161   Fibrinogen C-terminal domain-like  
jgi|Dappu1|316492|NCBI_GNO_1700287   0.00493   162-199   Fibrinogen C-terminal domain-like  
  0.012   221-284   Fibrinogen C-terminal domain-like  
jgi|Dappu1|320654|NCBI_GNO_3600132   0.00329   2-57   Fibrinogen C-terminal domain-like  
jgi|Dappu1|320781|NCBI_GNO_3700023   0.0663   213-262   Fibrinogen C-terminal domain-like  
jgi|Dappu1|323209|NCBI_GNO_5200100   0.0209   285-320   Fibrinogen C-terminal domain-like  
jgi|Dappu1|325789|NCBI_GNO_7200155   0.00314   5-43   Fibrinogen C-terminal domain-like  
jgi|Dappu1|326454|NCBI_GNO_7900108   0.000144   130-173   Fibrinogen C-terminal domain-like  
  0.00374   341-381   Fibrinogen C-terminal domain-like  
jgi|Dappu1|329890|NCBI_GNO_12900018   0.0272   182-227   Fibrinogen C-terminal domain-like  
jgi|Dappu1|330735|NCBI_GNO_14700002   0.000139   804-865   Fibrinogen C-terminal domain-like  
jgi|Dappu1|337195|NCBI_GNO_141100001   0.000658   99-147   Fibrinogen C-terminal domain-like  
jgi|Dappu1|59051|e_gw1.77.101.1   0.09   51-92   Fibrinogen C-terminal domain-like  
jgi|Dappu1|97326|fgenesh1_pg.C_scaffold_6000393   0.00658   239-276   Fibrinogen C-terminal domain-like  
  0.013   50-81   Fibrinogen C-terminal domain-like  
jgi|Dappu1|98761|fgenesh1_pg.C_scaffold_10000184   0.000269   270-311   Fibrinogen C-terminal domain-like  
  0.00129   68-114   Fibrinogen C-terminal domain-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   51642 51642
No Yes Homo sapiens 76_38 Human 101 101
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 30 30
No Yes Gorilla gorilla 76_3.1 Western gorilla 37 37
No Yes Pongo abelii 76_2 Sumatran orangutan 34 34
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 29 29
No Yes Papio anubis 76 Olive baboon 33 32
No Yes Macaca mulatta 76_1 Rhesus monkey 58 58
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 69 69
No Yes Otolemur garnettii 76_3 Small-eared galago 32 32
No Yes Microcebus murinus 76_1 Gray mouse lemur 35 33
No Yes Rattus norvegicus 76_5.0 Norway rat 32 32
No Yes Mus musculus 76_38 House mouse 40 39
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 28 26
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 32 31
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 29 27
No Yes Cavia porcellus 76_3 Domestic guinea pig 37 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 36 36
No Yes Ochotona princeps 76 American pika 30 27
No Yes Tupaia belangeri 76 Northern tree shrew 33 27
No Yes Sus scrofa 76_10.2 Pig 30 30
No Yes Bos taurus 76_3.1 Cattle 35 35
No Yes Ovis aries 76_3.1 Sheep 32 32
No Yes Vicugna pacos 76_1 Alpaca 17 16
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 30 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 76_1 Giant panda 30 30
No Yes Canis familiaris 76_3.1 Dog 36 36
No Yes Felis catus 76_6.2 Domestic cat 26 26
No Yes Equus caballus 76_2 Horse 33 33
No Yes Myotis lucifugus 76_2.0 Little brown bat 25 25
No Yes Pteropus vampyrus 76_1 Large flying fox 28 26
No Yes Sorex araneus 76_1 European shrew 22 21
No Yes Erinaceus europaeus 76 Western European hedgehog 33 30
No Yes Procavia capensis 76_1 Cape rock hyrax 27 26
No Yes Loxodonta africana 76_3 African savanna elephant 38 37
No Yes Echinops telfairi 76 Small Madagascar hedgehog 29 24
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 31 31
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 27 26
No Yes Macropus eugenii 76_1.0 Tammar wallaby 35 29
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 32 32
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 34 34
No Yes Ornithorhynchus anatinus 76_5 Platypus 26 26
No Yes Saccoglossus kowalevskii v3.0   67 65
No Yes Petromyzon marinus 76_7.0 Sea lamprey 25 25
No Yes Meleagris gallopavo 76_2 Turkey 41 41
No Yes Gallus gallus 76_4 Chicken 33 33
No Yes Anas platyrhynchos 76_1.0 Mallard 30 30
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 28 28
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 28 28
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 49 48
No Yes Anolis carolinensis 76_2.0 Green anole 37 37
No Yes Xenopus laevis African clawed frog 89 89
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 81 81
No Yes Latimeria chalumnae 76_1 Coelacanth 42 41
No Yes Lepisosteus oculatus 76 Spotted gar 44 44
No Yes Gadus morhua 76_1 Atlantic cod 50 49
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 56 56
No Yes Takifugu rubripes 76_4 Torafugu 153 153
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 58 58
No Yes Oryzias latipes 76_1 Japanese medaka 54 54
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 49 49
No Yes Poecilia formosa 76 Amazon molly 52 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 66 66
No Yes Astyanax mexicanus 76 Mexican tetra 48 47
No Yes Danio rerio 76_9 Zebrafish 87 87
No Yes Oikopleura dioica   12 10
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 112 106
No Yes Ciona intestinalis 76 Vase tunicate 55 55
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 66 62
No Yes Adineta vaga   14 14
No Yes Octopus bimaculoides 280   15 15
No Yes Crassostrea gigas 22 Pacific oyster 228 199
No Yes Lottia gigantea Owl limpet 72 72
No Yes Helobdella robusta   119 117
No Yes Capitella sp. I   142 142
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 3
No Yes Heliconius melpomene Postman butterfly 3 3
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 3 3
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 3 3
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 22 19
No Yes Drosophila grimshawi 1.3   45 43
No Yes Drosophila willistoni 1.3   38 35
No Yes Drosophila pseudoobscura 2.13   30 30
No Yes Drosophila persimilis 1.3   29 28
No Yes Drosophila suzukii   45 41
No Yes Drosophila yakuba 1.3   14 14
No Yes Drosophila simulans 1.3   15 15
No Yes Drosophila sechellia 1.3   15 15
No Yes Drosophila melanogaster 76_5 Fruit fly 24 24
No Yes Drosophila erecta 1.3   16 16
No Yes Drosophila ananassae 1.3   44 43
No Yes Drosophila virilis 1.2   34 34
No Yes Drosophila mojavensis 1.3   22 22
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 35 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 99 93
No Yes Anopheles darlingi 22 American malaria mosquito 37 36
No Yes Anopheles gambiae 49_3j African malaria mosquito 49 49
No Yes Tribolium castaneum 3.0 Red flour beetle 8 8
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 3 3
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 42 40
No Yes Strigamia maritima 22   19 19
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 27 27
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   2 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   5 5
No Yes Caenorhabditis brenneri   8 8
No Yes Caenorhabditis remanei   8 8
No Yes Caenorhabditis elegans 76_235 Roundworm 8 8
No Yes Caenorhabditis briggsae 2   5 5
No Yes Trichinella spiralis 22   3 3
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   194 172
No Yes Nematostella vectensis 1.0 Starlet sea anemone 147 142
No Yes Hydra vulgaris   20 17
No Yes Amphimedon queenslandica   271 257
No Yes Trichoplax adhaerens   15 15
No Yes Proterospongia sp. ATCC 50818   7 7
No Yes Monosiga brevicollis   19 9
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Babesia bovis T2Bo   4 4
No Yes Theileria parva   2 2
No Yes Theileria annulata   2 2
No Yes Plasmodium falciparum 3D7   2 2
No Yes Plasmodium vivax SaI-1 7.0   2 2
No Yes Plasmodium knowlesi strain H   2 2
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   2 2
No Yes Naegleria gruberi   14 14
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Ilumatobacter coccineus   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Rothia mucilaginosa DY-18   4 3
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Bacteriovorax marinus SJ   6 2
No Yes Bdellovibrio bacteriovorus HD100   4 2
No Yes Haliangium ochraceum DSM 14365   9 9
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 113 112
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 23 23
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 49 49
No Yes Ascaris suum Victoria/Ghent Pig roundworm 6 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 7 7
No Yes Plasmodium falciparum HB3   2 2
No Yes Plasmodium falciparum Dd2   2 2
No Yes Actinomyces odontolyticus ATCC 17982   2 2
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   4 2
No Yes Sorangium cellulosum So0157-2   2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 100 100
No Yes Homo sapiens (NCBI version) Human 47 47
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 32 31
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 5 5
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 37 37
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 30 30
No Yes Gorilla gorilla 69_3.1 Western gorilla 31 31
No Yes Pongo abelii 69_2 Sumatran orangutan 32 32
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 29 29
No Yes Macaca mulatta 69_1 Rhesus monkey 32 32
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 28 28
No Yes Otolemur garnettii 69_3 Small-eared galago 32 32
No Yes Microcebus murinus 69_1 Gray mouse lemur 35 33
No Yes Rattus norvegicus 69_3.4 Norway rat 29 29
No Yes Mus musculus 69_38 House mouse 33 32
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 28 26
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 29 28
No Yes Cavia porcellus 69_3 Domestic guinea pig 32 32
No Yes Oryctolagus cuniculus 69_2 Rabbit 31 30
No Yes Ochotona princeps 69 American pika 30 27
No Yes Tupaia belangeri 69 Northern tree shrew 33 27
No Yes Sus scrofa 69_10.2 Pig 29 29
No Yes Bos taurus 69_3.1 Cattle 28 28
No Yes Vicugna pacos 69_1 Alpaca 17 16
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 30 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 31 31
No Yes Ailuropoda melanoleuca 69_1 Giant panda 30 30
No Yes Canis familiaris 69_3.1 Dog 27 27
No Yes Felis catus 69 Domestic cat 25 24
No Yes Equus caballus 69_2 Horse 30 30
No Yes Myotis lucifugus 69_2.0 Little brown bat 24 24
No Yes Pteropus vampyrus 69_1 Large flying fox 28 26
No Yes Sorex araneus 69_1 European shrew 22 21
No Yes Erinaceus europaeus 69 Western European hedgehog 33 30
No Yes Procavia capensis 69_1 Cape rock hyrax 27 26
No Yes Loxodonta africana 69_3 African savanna elephant 31 30
No Yes Echinops telfairi 69 Small Madagascar hedgehog 29 24
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 29 23
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 27 26
No Yes Macropus eugenii 69_1.0 Tammar wallaby 35 29
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 26 26
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 32 32
No Yes Ornithorhynchus anatinus 69_5 Platypus 23 23
No Yes Petromyzon marinus 69_7.0 Sea lamprey 24 24
No Yes Meleagris gallopavo 69_2 Turkey 28 28
No Yes Gallus gallus 69_2 Chicken 32 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 27 27
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 43 42
No Yes Anolis carolinensis 69_2.0 Green anole 34 34
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 61 61
No Yes Latimeria chalumnae 69_1 Coelacanth 37 36
No Yes Gadus morhua 69_1 Atlantic cod 37 36
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 45 45
No Yes Takifugu rubripes 69_4 Torafugu 42 42
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 40 40
No Yes Oryzias latipes 69_1 Japanese medaka 44 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 48 48
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 50 50
No Yes Danio rerio 69_9 Zebrafish 57 57
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 79 73
No Yes Ciona intestinalis 69 Vase tunicate 49 49
No Yes Drosophila melanogaster 69_5 Fruit fly 14 14
No Yes Caenorhabditis elegans 69_215 Roundworm 5 5
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   4 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   18019 17713
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Protozoadb 2010_08 (Protozoadb)   36 36
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   2190 2119
No Yes Uniprot 2018_03 genome   16498 15843
No Yes Global Ocean Sampling Expedition (GOS)   78 77
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   14 14
No Yes PDB chains (SCOP 1.75) (PDB)   21 21
No Yes Protein Data Bank (all PDB sequenc)   307 307
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   994 994
No Yes TargetDB (Targets)   20 20
No Yes UniProt viral sequences (Viral)   2 2

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