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  Home > Genomes > STRING v9.0.5 > BRCA2 tower domain domains


BRCA2 tower domain superfamily domain assignments
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STRING v9.0.5

Assignment details

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STRING v9.0.5 (STRING) has 43 significant domains in 42 proteins.

     

Sequence ID   Evalue   Region   Family  
10090.ENSMUSP00000038576   2.09e-60   2752-2887   BRCA2 tower domain  
10116.ENSRNOP00000001475   2.75e-56   2761-2896   BRCA2 tower domain  
10141.ENSCPOP00000004635   1.03e-51   2724-2860   BRCA2 tower domain  
121224.XP_002432323   0.0000916   62-166   BRCA2 tower domain  
13616.ENSMODP00000033276   9.55e-52   2811-2948   BRCA2 tower domain  
15368.BRADI2G03990.1   2.22e-29   1141-1254   BRCA2 tower domain  
28377.ENSACAP00000004459   2.62e-51   353-489   BRCA2 tower domain  
29760.GSVIVG00037396001   7.26e-20   532-650   BRCA2 tower domain  
31033.ENSTRUP00000015030   5.1e-51   352-486   BRCA2 tower domain  
3694.eugene3.00141368   7.26e-16   826-940   BRCA2 tower domain  
3702.AT4G00020.2-P   7.85e-16   778-896   BRCA2 tower domain  
3702.AT5G01630.1-P   2.75e-16   787-905   BRCA2 tower domain  
39946.BGIOSIBCE000504   2.35e-37   1123-1236   BRCA2 tower domain  
39947.LOC_Os01g07110.1   5.49e-38   1173-1286   BRCA2 tower domain  
45351.JGI11039   2.75e-23   309-439   BRCA2 tower domain  
59689.fgenesh2_kg.6__43__AT4G00020.1   2.35e-16   783-900   BRCA2 tower domain  
59729.ENSTGUP00000012130   1.57e-57   2747-2884   BRCA2 tower domain  
69293.ENSGACP00000015199   1.7e-42   343-477   BRCA2 tower domain  
6945.ISCW017529-PA   0.0000000000216   1126-1257   BRCA2 tower domain  
7159.AAEL010133-PA   0.000000222   804-921   BRCA2 tower domain  
7159.AAEL014774-PA   0.00000068   1284-1399   BRCA2 tower domain  
7165.AGAP007032-PA   0.00000262   1611-1715   BRCA2 tower domain  
7176.CPIJ012893-PA   0.00000131   1293-1405   BRCA2 tower domain  
7668.A5A3F7   2.62e-28   3016-3156   BRCA2 tower domain  
7668.XP_001186736   0.00000000000275   2-48   BRCA2 tower domain  
7668.XP_789722   1.96e-29   275-415   BRCA2 tower domain  
7739.JGI109602   1.12e-19   324-444   BRCA2 tower domain  
  0.00000000576   266-315   BRCA2 tower domain  
  0.000114   2-54   BRCA2 tower domain  
7955.ENSDARP00000099674   3.14e-55   2376-2510   BRCA2 tower domain  
8364.ENSXETP00000037057   1.11e-49   353-491   BRCA2 tower domain  
9031.ENSGALP00000027524   6.02e-60   2776-2913   BRCA2 tower domain  
9258.ENSOANP00000024376   1.44e-49   2878-3015   BRCA2 tower domain  
9361.ENSDNOP00000013476   8.76e-56   2819-2955   BRCA2 tower domain  
9544.ENSMMUP00000009432   2.75e-57   2749-2885   BRCA2 tower domain  
9598.ENSPTRP00000009810   2.09e-51   2831-2962   BRCA2 tower domain  
9600.ENSPPYP00000005997   1.96e-56   2828-2964   BRCA2 tower domain  
9606.ENSP00000369497   2.88e-57   2831-2967   BRCA2 tower domain  
9615.ENSCAFP00000009557   2.49e-59   2850-2986   BRCA2 tower domain  
9796.ENSECAP00000013146   4.58e-57   2835-2971   BRCA2 tower domain  
9823.ENSSSCP00000009970   5.1e-59   2802-2938   BRCA2 tower domain  
9913.ENSBTAP00000001311   4.45e-59   2790-2926   BRCA2 tower domain  
9986.ENSOCUP00000014514   2.88e-56   2813-2949   BRCA2 tower domain  
99883.ENSTNIP00000002435   2.35e-56   602-737   BRCA2 tower domain  
 
Weak hits:
10090.ENSMUSP00000080301   0.0412   127-180   BRCA2 tower domain  
10090.ENSMUSP00000081670   0.0137   361-419   BRCA2 tower domain  
10116.ENSRNOP00000007276   0.0412   127-180   BRCA2 tower domain  
10116.ENSRNOP00000011714   0.000844   359-418   BRCA2 tower domain  
10141.ENSCPOP00000011672   0.0785   127-176   BRCA2 tower domain  
103690.alr4247   0.0569   285-331   BRCA2 tower domain  
135651.CBN05032   0.0824   72-144   BRCA2 tower domain  
13616.ENSMODP00000012155   0.0863   191-222   BRCA2 tower domain  
164328.JGI77442   0.0357   30-98   BRCA2 tower domain  
164328.JGI77443   0.0667   42-115   BRCA2 tower domain  
176299.Atu4492   0.00235   25-127   BRCA2 tower domain  
198094.BA_3639   0.0667   33-62   BRCA2 tower domain  
222523.BCE_3598   0.051   24-62   BRCA2 tower domain  
226900.BC3581   0.0628   25-62   BRCA2 tower domain  
246197.MXAN_3841   0.0235   92-152   BRCA2 tower domain  
251221.gll1308   0.0804   53-123   BRCA2 tower domain  
260799.BAS3374   0.0667   33-62   BRCA2 tower domain  
261594.GBAA3639   0.0667   33-62   BRCA2 tower domain  
264201.pc0178   0.053   242-273   BRCA2 tower domain  
269798.CHU_1070   0.0275   772-809   BRCA2 tower domain  
281309.BT9727_1604   0.0706   30-67   BRCA2 tower domain  
281309.BT9727_3337   0.0275   32-62   BRCA2 tower domain  
281687.CJA03949   0.0102   437-520   BRCA2 tower domain  
288681.BCZK3288   0.0589   16-62   BRCA2 tower domain  
31234.CRE04802   0.00216   228-308   BRCA2 tower domain  
31234.CRE10763   0.0294   353-437   BRCA2 tower domain  
315730.BcerKBAB4_3267   0.0549   33-62   BRCA2 tower domain  
3218.JGI19684   0.0608   25-56   BRCA2 tower domain  
323098.Nwi_1165   0.0271   38-77   BRCA2 tower domain  
323848.NmulC_2780   0.0569   209-270   BRCA2 tower domain  
325240.Sbal_3202   0.0824   287-333   BRCA2 tower domain  
349521.HCH_00832   0.0216   225-293   BRCA2 tower domain  
35128.JGI34596   0.0373   630-696   BRCA2 tower domain  
361100.BCQ_3375   0.0549   16-62   BRCA2 tower domain  
362242.MUL_2509   0.0667   4-47   BRCA2 tower domain  
365044.Pnap_0362   0.0746   556-634   BRCA2 tower domain  
3702.AT2G07590.1-P   0.0163   356-409   BRCA2 tower domain  
37692.ATP_00408   0.00275   40-74   BRCA2 tower domain  
381754.PSPA7_1469   0.0137   498-561   BRCA2 tower domain  
395019.Bmul_4659   0.0118   47-125   BRCA2 tower domain  
395492.Rleg2_0103   0.0049   118-188   BRCA2 tower domain  
399742.Ent638_3414   0.051   53-112   BRCA2 tower domain  
405532.BCB4264_A3690   0.0589   24-62   BRCA2 tower domain  
405534.BCAH187_A3605   0.0471   22-62   BRCA2 tower domain  
405535.BCAH820_3588   0.0824   33-62   BRCA2 tower domain  
407976.Sbal223_1171   0.0824   287-333   BRCA2 tower domain  
412694.BALH_3218   0.0824   33-62   BRCA2 tower domain  
431947.PGN_0165   0.0745   11-34   BRCA2 tower domain  
436017.A4RZZ4   0.00432   98-142   BRCA2 tower domain  
43989.cce_5301   0.0175   132-168   BRCA2 tower domain  
452637.Oter_4572   0.00373   43-107   BRCA2 tower domain  
45351.JGI238530   0.0589   4-95   BRCA2 tower domain  
4558.Sb0013s007040.1   0.00432   670-695   BRCA2 tower domain  
478009.OE1556F   0.00155   62-104   BRCA2 tower domain  
478801.Ksed_19850   0.00765   489-551   BRCA2 tower domain  
485918.Cpin_0988   0.049   97-152   BRCA2 tower domain  
485918.Cpin_6588   0.00353   53-115   BRCA2 tower domain  
498214.CLK_A0168   0.011   35-62   BRCA2 tower domain  
500485.B6HV75   0.0981   593-624   BRCA2 tower domain  
5141.NCU02681.1   0.0745   132-203   BRCA2 tower domain  
51511.ENSCSAVP00000001952   0.0222   163-219   BRCA2 tower domain  
519441.Smon_0834   0.0235   48-95   BRCA2 tower domain  
5270.UM03189.1   0.0981   40-79   BRCA2 tower domain  
5671.LinJ02.0070   0.000883   62-146   BRCA2 tower domain  
568206.BAMEG_0995   0.0667   33-62   BRCA2 tower domain  
5722.A2DRX7   0.0357   4-51   BRCA2 tower domain  
5722.A2EF29   0.0942   90-156   BRCA2 tower domain  
5722.A2EXT0   0.0451   111-156   BRCA2 tower domain  
5722.A2F3D7   0.0726   106-156   BRCA2 tower domain  
5722.A2G218   0.0294   106-156   BRCA2 tower domain  
5722.A2GUJ8   0.0235   56-106   BRCA2 tower domain  
5722.A2GY58   0.0334   106-156   BRCA2 tower domain  
5722.A2GZB9   0.1   106-156   BRCA2 tower domain  
5722.A2H986   0.0569   106-156   BRCA2 tower domain  
5722.A2HAN4   0.0883   106-156   BRCA2 tower domain  
5722.A2HMY0   0.0647   106-156   BRCA2 tower domain  
5722.A2HV04   0.0981   200-252   BRCA2 tower domain  
5722.A2HZ41   0.0961   34-79   BRCA2 tower domain  
572264.BCA_3674   0.0589   32-62   BRCA2 tower domain  
573370.DMR_01430   0.0314   6-56   BRCA2 tower domain  
573370.DMR_01650   0.0255   6-56   BRCA2 tower domain  
5850.PKH_145630   0.00251   234-339   BRCA2 tower domain  
5911.XP_001021550   0.0549   30-80   BRCA2 tower domain  
5911.XP_001021586   0.0196   1659-1690   BRCA2 tower domain  
5911.XP_001024052   0.0388   24-92   BRCA2 tower domain  
592021.BAA_3665   0.0667   33-62   BRCA2 tower domain  
59689.fgenesh2_kg.1__2297__AT1G21060.1   0.0641   406-443   BRCA2 tower domain  
59689.fgenesh2_kg.5__2730__AT3G62340.1   0.0765   59-114   BRCA2 tower domain  
59729.ENSTGUP00000009643   0.0167   175-218   BRCA2 tower domain  
59729.ENSTGUP00000015874   0.0235   175-216   BRCA2 tower domain  
6238.CBG13657   0.0628   296-335   BRCA2 tower domain  
6239.T28A8.3   0.0824   438-535   BRCA2 tower domain  
64091.VNG0373H   0.00179   71-113   BRCA2 tower domain  
64471.sync_1693   0.0628   37-86   BRCA2 tower domain  
665079.A7EMD3   0.0388   40-91   BRCA2 tower domain  
67593.JGI129389   0.0804   157-205   BRCA2 tower domain  
7070.XP_968201   0.051   35-78   BRCA2 tower domain  
7070.XP_972671   0.0981   93-129   BRCA2 tower domain  
7159.AAEL001317-PA   0.0432   137-192   BRCA2 tower domain  
7222.FBpp0156755   0.0118   50-115   BRCA2 tower domain  
7222.FBpp0157877   0.0706   97-165   BRCA2 tower domain  
7237.FBpp0279539   0.0902   245-340   BRCA2 tower domain  
7260.FBpp0241570   0.0706   12-65   BRCA2 tower domain  
7260.FBpp0248966   0.0706   19-45   BRCA2 tower domain  
7260.FBpp0252609   0.00942   61-129   BRCA2 tower domain  
74547.PMT0236   0.0549   124-189   BRCA2 tower domain  
7460.XP_001121504   0.0159   307-417   BRCA2 tower domain  
7460.XP_001121670   0.0785   28-87   BRCA2 tower domain  
7460.XP_001122078   0.0804   503-548   BRCA2 tower domain  
7739.JGI118833   0.0381   29-95   BRCA2 tower domain  
7739.JGI74852   0.0647   42-90   BRCA2 tower domain  
7955.ENSDARP00000071267   0.0235   22-83   BRCA2 tower domain  
8090.ENSORLP00000011104   0.0785   129-187   BRCA2 tower domain  
8090.ENSORLP00000023256   0.0353   127-176   BRCA2 tower domain  
8364.ENSXETP00000029225   0.0366   128-172   BRCA2 tower domain  
9258.ENSOANP00000024812   0.1   102-151   BRCA2 tower domain  
9544.ENSMMUP00000022684   0.0785   127-176   BRCA2 tower domain  
9598.ENSPTRP00000021742   0.0785   127-176   BRCA2 tower domain  
9598.ENSPTRP00000053717   0.0186   14-68   BRCA2 tower domain  
9600.ENSPPYP00000014528   0.0746   127-176   BRCA2 tower domain  
9606.ENSP00000338788   0.0785   127-176   BRCA2 tower domain  
9615.ENSCAFP00000031789   0.0184   396-451   BRCA2 tower domain  
9685.ENSFCAP00000007612   0.0608   127-176   BRCA2 tower domain  
9685.ENSFCAP00000008182   0.0745   341-416   BRCA2 tower domain  
9796.ENSECAP00000015012   0.0883   159-208   BRCA2 tower domain  
9823.ENSSSCP00000005769   0.0706   354-419   BRCA2 tower domain  
9823.ENSSSCP00000016981   0.0785   127-176   BRCA2 tower domain  
9913.ENSBTAP00000029007   0.0785   127-176   BRCA2 tower domain  
9986.ENSOCUP00000010230   0.0785   127-176   BRCA2 tower domain  
9986.ENSOCUP00000010234   0.0785   127-176   BRCA2 tower domain  
99883.ENSTNIP00000004257   0.0785   57-121   BRCA2 tower domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   1748 1748
No Yes Homo sapiens 76_38 Human 3 3
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Oikopleura dioica   2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Strigamia maritima 22   1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Amphimedon queenslandica   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 3 3
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 1 1
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 3 3
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 6 6
No Yes Oryza meridionalis 22   4 4
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Naegleria gruberi   1 1
No Yes Acetobacterium woodii DSM 1030   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 3 3
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes NCBI 2017_08 genome   751 751
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   43 42
No Yes Uniprot 2018_03 genome   577 576
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   10 10
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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