SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Gadus morhua 76_1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Gadus morhua 76_1

Assignment details

(show help)


Gadus morhua 76_1 has 251 significant domains in 50 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGMOP00000000137   0.0000000011   275-309   LDL receptor-like module  
  0.0000000157   239-275   LDL receptor-like module  
ENSGMOP00000000568   0.00000000000484   192-232   LDL receptor-like module  
  0.00000000000812   106-146   LDL receptor-like module  
  0.000000000183   145-185   LDL receptor-like module  
  0.000000000236   69-107   LDL receptor-like module  
  0.000000000576   230-270   LDL receptor-like module  
  0.000000017   275-311   LDL receptor-like module  
  0.000000055   1-28   LDL receptor-like module  
ENSGMOP00000001458   0.000000000209   39-76   LDL receptor-like module  
ENSGMOP00000001522   0.0000000000602   856-899   LDL receptor-like module  
  0.000000000262   2823-2864   LDL receptor-like module  
  0.00000000034   3409-3446   LDL receptor-like module  
  0.000000000511   2687-2728   LDL receptor-like module  
  0.000000000576   3285-3325   LDL receptor-like module  
  0.000000000812   897-937   LDL receptor-like module  
  0.00000000157   3526-3564   LDL receptor-like module  
  0.0000000017   2612-2649   LDL receptor-like module  
  0.00000000183   819-858   LDL receptor-like module  
  0.00000000196   981-1015   LDL receptor-like module  
  0.00000000209   941-980   LDL receptor-like module  
  0.00000000209   3487-3523   LDL receptor-like module  
  0.00000000223   3368-3404   LDL receptor-like module  
  0.00000000942   3248-3282   LDL receptor-like module  
  0.00000000995   2735-2769   LDL receptor-like module  
  0.0000000144   3444-3484   LDL receptor-like module  
  0.0000000196   3566-3609   LDL receptor-like module  
  0.0000000209   2772-2812   LDL receptor-like module  
  0.0000000209   3608-3652   LDL receptor-like module  
  0.0000000209   3327-3364   LDL receptor-like module  
  0.0000000275   2518-2558   LDL receptor-like module  
  0.0000000484   2652-2689   LDL receptor-like module  
  0.000000123   1030-1066   LDL receptor-like module  
  0.000000157   2443-2480   LDL receptor-like module  
  0.000000236   2478-2520   LDL receptor-like module  
  0.00000126   2575-2607   LDL receptor-like module  
  0.00000615   3653-3686   LDL receptor-like module  
  0.0851   1077-1102   LDL receptor-like module  
ENSGMOP00000001593   0.0000131   71-111   LDL receptor-like module  
  0.000117   35-69   LDL receptor-like module  
ENSGMOP00000001941   0.00000000017   48-87   LDL receptor-like module  
  0.00000000628   5-41   LDL receptor-like module  
ENSGMOP00000002725   0.000000000105   85-122   LDL receptor-like module  
  0.000000000157   3-40   LDL receptor-like module  
  0.000000000524   213-252   LDL receptor-like module  
  0.000000000563   122-159   LDL receptor-like module  
  0.0000000825   256-291   LDL receptor-like module  
  0.00000144   43-75   LDL receptor-like module  
ENSGMOP00000002900   0.0000000000484   1-37   LDL receptor-like module  
  0.00000000131   36-78   LDL receptor-like module  
  0.00000000144   112-149   LDL receptor-like module  
  0.0000000102   153-190   LDL receptor-like module  
  0.0000000589   78-111   LDL receptor-like module  
ENSGMOP00000003463   0.0000000000114   1076-1114   LDL receptor-like module  
  0.000000000017   2705-2746   LDL receptor-like module  
  0.0000000000183   75-116   LDL receptor-like module  
  0.000000000127   3555-3600   LDL receptor-like module  
  0.000000000128   3598-3636   LDL receptor-like module  
  0.000000000157   2872-2910   LDL receptor-like module  
  0.000000000497   2669-2708   LDL receptor-like module  
  0.000000000537   1118-1155   LDL receptor-like module  
  0.000000000903   1039-1073   LDL receptor-like module  
  0.00000000105   3896-3932   LDL receptor-like module  
  0.00000000117   189-229   LDL receptor-like module  
  0.00000000157   3723-3763   LDL receptor-like module  
  0.00000000157   3688-3725   LDL receptor-like module  
  0.00000000196   993-1031   LDL receptor-like module  
  0.00000000236   2957-2998   LDL receptor-like module  
  0.00000000249   1-36   LDL receptor-like module  
  0.00000000471   155-192   LDL receptor-like module  
  0.00000000746   2829-2868   LDL receptor-like module  
  0.0000000102   3518-3559   LDL receptor-like module  
  0.0000000131   1156-1194   LDL receptor-like module  
  0.0000000157   3763-3802   LDL receptor-like module  
  0.000000017   1247-1286   LDL receptor-like module  
  0.0000000602   2784-2829   LDL receptor-like module  
  0.0000000838   235-271   LDL receptor-like module  
  0.000000183   38-74   LDL receptor-like module  
  0.000000236   119-153   LDL receptor-like module  
  0.000000576   2998-3032   LDL receptor-like module  
  0.000000851   3853-3890   LDL receptor-like module  
  0.0000017   3651-3684   LDL receptor-like module  
  0.00000236   2914-2958   LDL receptor-like module  
  0.0000157   2751-2789   LDL receptor-like module  
  0.000017   3480-3516   LDL receptor-like module  
  0.0000589   1200-1231   LDL receptor-like module  
  0.0000687   1284-1318   LDL receptor-like module  
ENSGMOP00000003951   0.0000000445   274-310   LDL receptor-like module  
ENSGMOP00000004100   0.000000000072   23-59   LDL receptor-like module  
  0.000000000825   104-143   LDL receptor-like module  
  0.00000000144   63-101   LDL receptor-like module  
ENSGMOP00000004172   0.000000000301   413-451   LDL receptor-like module  
  0.00000000209   256-293   LDL receptor-like module  
ENSGMOP00000004408   0.00000000000995   815-856   LDL receptor-like module  
  0.00000000038   858-900   LDL receptor-like module  
  0.000000000825   2685-2719   LDL receptor-like module  
  0.000000000929   2644-2680   LDL receptor-like module  
  0.00000000106   3304-3345   LDL receptor-like module  
  0.00000000111   983-1021   LDL receptor-like module  
  0.00000000275   1031-1066   LDL receptor-like module  
  0.00000000327   3-42   LDL receptor-like module  
  0.00000000471   2725-2759   LDL receptor-like module  
  0.0000000119   2509-2550   LDL receptor-like module  
  0.000000017   2770-2803   LDL receptor-like module  
  0.0000000262   3268-3302   LDL receptor-like module  
  0.0000000288   3354-3392   LDL receptor-like module  
  0.0000000288   2840-2880   LDL receptor-like module  
  0.0000000419   2549-2589   LDL receptor-like module  
  0.0000000825   49-84   LDL receptor-like module  
  0.000000654   1072-1110   LDL receptor-like module  
  0.00000223   2473-2511   LDL receptor-like module  
  0.00000628   2607-2639   LDL receptor-like module  
  0.0393   2804-2828   LDL receptor-like module  
ENSGMOP00000005539   0.0000000000458   824-865   LDL receptor-like module  
  0.0000000000982   3525-3565   LDL receptor-like module  
  0.000000000419   2642-2678   LDL receptor-like module  
  0.000000000445   865-907   LDL receptor-like module  
  0.000000000497   3486-3525   LDL receptor-like module  
  0.00000000089   3566-3602   LDL receptor-like module  
  0.000000000982   2686-2719   LDL receptor-like module  
  0.00000000103   3609-3654   LDL receptor-like module  
  0.00000000106   906-945   LDL receptor-like module  
  0.00000000119   2859-2900   LDL receptor-like module  
  0.00000000157   2511-2552   LDL receptor-like module  
  0.00000000157   3443-3483   LDL receptor-like module  
  0.00000000209   3-42   LDL receptor-like module  
  0.00000000262   2772-2807   LDL receptor-like module  
  0.0000000034   2727-2761   LDL receptor-like module  
  0.00000000353   3326-3363   LDL receptor-like module  
  0.00000000419   2551-2591   LDL receptor-like module  
  0.00000000772   3406-3441   LDL receptor-like module  
  0.0000000236   1034-1071   LDL receptor-like module  
  0.0000000537   2809-2848   LDL receptor-like module  
  0.0000000628   3366-3404   LDL receptor-like module  
  0.000000511   3693-3732   LDL receptor-like module  
  0.000000668   2476-2513   LDL receptor-like module  
  0.00000144   3654-3687   LDL receptor-like module  
  0.00122   950-975   LDL receptor-like module  
ENSGMOP00000006742   0.0000000288   279-315   LDL receptor-like module  
ENSGMOP00000006899   0.000000000236   258-297   LDL receptor-like module  
  0.000000000471   23-58   LDL receptor-like module  
  0.000000000576   169-205   LDL receptor-like module  
  0.0000000127   102-140   LDL receptor-like module  
  0.0000000367   301-339   LDL receptor-like module  
  0.00641   146-174   LDL receptor-like module  
ENSGMOP00000007199   0.0000000681   208-242   LDL receptor-like module  
  0.00123   3-24   LDL receptor-like module  
ENSGMOP00000007521   0.0000000144   160-198   LDL receptor-like module  
  0.000157   321-357   LDL receptor-like module  
ENSGMOP00000007530   0.000000144   290-326   LDL receptor-like module  
ENSGMOP00000007977   0.00000000432   121-158   LDL receptor-like module  
  0.0000000864   2-35   LDL receptor-like module  
  0.0000000908   202-241   LDL receptor-like module  
  0.000000327   80-119   LDL receptor-like module  
  0.000000419   44-75   LDL receptor-like module  
  0.00000183   167-197   LDL receptor-like module  
ENSGMOP00000007995   0.00000017   77-116   LDL receptor-like module  
  0.000000314   1-32   LDL receptor-like module  
  0.000000471   41-71   LDL receptor-like module  
ENSGMOP00000008004   0.00000000131   244-279   LDL receptor-like module  
  0.00000000929   113-154   LDL receptor-like module  
  0.00000038   40-70   LDL receptor-like module  
  0.000000864   73-110   LDL receptor-like module  
  0.00000131   1-31   LDL receptor-like module  
  0.00000196   163-193   LDL receptor-like module  
ENSGMOP00000008009   0.00000000288   105-142   LDL receptor-like module  
  0.000000314   33-63   LDL receptor-like module  
  0.000000641   66-103   LDL receptor-like module  
  0.00000131   151-181   LDL receptor-like module  
  0.0000367   1-24   LDL receptor-like module  
ENSGMOP00000008014   0.000000432   75-109   LDL receptor-like module  
ENSGMOP00000008674   0.00000028   39-73   LDL receptor-like module  
ENSGMOP00000009144   0.0000000131   354-390   LDL receptor-like module  
  0.0000000432   391-418   LDL receptor-like module  
  0.00000072   456-494   LDL receptor-like module  
ENSGMOP00000010039   0.0000000000929   248-288   LDL receptor-like module  
  0.000000000183   212-250   LDL receptor-like module  
  0.000000000223   127-167   LDL receptor-like module  
  0.000000000314   294-329   LDL receptor-like module  
  0.00000000106   52-90   LDL receptor-like module  
  0.00000000275   89-126   LDL receptor-like module  
  0.00000000327   171-209   LDL receptor-like module  
  0.00000126   10-52   LDL receptor-like module  
ENSGMOP00000010667   0.00000000419   279-315   LDL receptor-like module  
ENSGMOP00000010682   0.0000000327   144-176   LDL receptor-like module  
ENSGMOP00000010703   0.00000000157   57-97   LDL receptor-like module  
ENSGMOP00000011341   0.000000000942   543-586   LDL receptor-like module  
  0.00000123   106-143   LDL receptor-like module  
ENSGMOP00000012356   0.000000038   271-308   LDL receptor-like module  
ENSGMOP00000014154   0.00000000484   8-45   LDL receptor-like module  
ENSGMOP00000014157   0.0000755   241-273   LDL receptor-like module  
ENSGMOP00000014367   0.00000000419   500-535   LDL receptor-like module  
  0.00000000654   464-500   LDL receptor-like module  
  0.0000000196   429-464   LDL receptor-like module  
  0.00000365   539-579   LDL receptor-like module  
ENSGMOP00000015619   0.00000107   9-35   LDL receptor-like module  
ENSGMOP00000015681   0.00000000262   553-590   LDL receptor-like module  
  0.00000000798   484-516   LDL receptor-like module  
  0.00000000929   73-109   LDL receptor-like module  
  0.0000000113   322-360   LDL receptor-like module  
  0.0000000128   635-671   LDL receptor-like module  
  0.000000017   196-233   LDL receptor-like module  
  0.0000000209   277-306   LDL receptor-like module  
  0.0000000602   405-437   LDL receptor-like module  
  0.000000089   598-630   LDL receptor-like module  
  0.0000000956   233-261   LDL receptor-like module  
  0.0000000956   364-398   LDL receptor-like module  
  0.000000105   152-185   LDL receptor-like module  
  0.000000124   4-40   LDL receptor-like module  
  0.000000144   116-150   LDL receptor-like module  
  0.000000144   675-708   LDL receptor-like module  
  0.000000288   439-474   LDL receptor-like module  
  0.000000511   522-554   LDL receptor-like module  
  0.00000144   43-71   LDL receptor-like module  
ENSGMOP00000015708   0.00000000406   2301-2340   LDL receptor-like module  
  0.00000000432   2343-2380   LDL receptor-like module  
  0.0000000072   1457-1496   LDL receptor-like module  
  0.000000012   1383-1418   LDL receptor-like module  
  0.00000017   1417-1453   LDL receptor-like module  
  0.000000288   1345-1381   LDL receptor-like module  
  0.00000055   1538-1563   LDL receptor-like module  
  0.00000131   2163-2188   LDL receptor-like module  
  0.00000314   1566-1600   LDL receptor-like module  
ENSGMOP00000016128   0.0000000144   445-480   LDL receptor-like module  
  0.00000144   519-558   LDL receptor-like module  
  0.00000484   479-515   LDL receptor-like module  
ENSGMOP00000016153   0.0000000000327   18-53   LDL receptor-like module  
  0.00000000367   95-125   LDL receptor-like module  
  0.0000515   133-168   LDL receptor-like module  
  0.000654   55-91   LDL receptor-like module  
ENSGMOP00000016441   0.0000000000314   588-625   LDL receptor-like module  
  0.0000000000668   757-796   LDL receptor-like module  
  0.0000000000969   628-665   LDL receptor-like module  
  0.000000000122   510-549   LDL receptor-like module  
  0.0000000011   800-836   LDL receptor-like module  
  0.000000144   674-704   LDL receptor-like module  
  0.000000353   707-744   LDL receptor-like module  
  0.0000445   557-584   LDL receptor-like module  
ENSGMOP00000017065   0.0000000000288   330-368   LDL receptor-like module  
  0.000000236   83-121   LDL receptor-like module  
  0.000484   304-329   LDL receptor-like module  
ENSGMOP00000018204   0.000000000903   1310-1347   LDL receptor-like module  
  0.00000000982   1234-1272   LDL receptor-like module  
  0.00000223   1274-1308   LDL receptor-like module  
ENSGMOP00000018458   0.000000131   87-123   LDL receptor-like module  
ENSGMOP00000018479   0.0000000633   34-76   LDL receptor-like module  
ENSGMOP00000018551   0.0000000000301   1-37   LDL receptor-like module  
  0.0000000000851   78-117   LDL receptor-like module  
  0.000000000117   117-156   LDL receptor-like module  
  0.000000000131   167-203   LDL receptor-like module  
  0.000000000681   206-243   LDL receptor-like module  
  0.0000000107   41-78   LDL receptor-like module  
ENSGMOP00000019048   0.0000000113   238-276   LDL receptor-like module  
ENSGMOP00000019236   0.0000000000654   140-176   LDL receptor-like module  
  0.00000000746   418-456   LDL receptor-like module  
  0.000000982   180-222   LDL receptor-like module  
  0.00000144   338-378   LDL receptor-like module  
  0.00000183   380-417   LDL receptor-like module  
ENSGMOP00000019586   0.00000000707   16-52   LDL receptor-like module  
ENSGMOP00000020493   0.000000602   168-198   LDL receptor-like module  
  0.00106   361-396   LDL receptor-like module  
 
Weak hits:
ENSGMOP00000000015   0.000124   2-28   LDL receptor-like module  
ENSGMOP00000003962   0.000877   70-109   LDL receptor-like module  
  0.00613   38-68   LDL receptor-like module  
ENSGMOP00000008243   0.011   58-103   LDL receptor-like module  
ENSGMOP00000009807   0.000982   2-22   LDL receptor-like module  
ENSGMOP00000011873   0.000432   55-85   LDL receptor-like module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a LDL receptor-like module domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.