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  Home > Genomes > Daphnia pulex > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Daphnia pulex

Assignment details

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Daphnia pulex has 221 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Dappu1|104316|fgenesh1_pg.C_scaffold_29000195   0.0000000314   29-70   LDL receptor-like module  
jgi|Dappu1|110476|fgenesh1_pg.C_scaffold_75000041   0.000000524   652-693   LDL receptor-like module  
jgi|Dappu1|15616|gw1.193.18.1   0.000000000956   68-105   LDL receptor-like module  
  0.0000000113   26-61   LDL receptor-like module  
  0.000000707   1-23   LDL receptor-like module  
jgi|Dappu1|16163|gw1.1121.4.1   0.000000000511   35-71   LDL receptor-like module  
  0.00000000838   120-153   LDL receptor-like module  
  0.0000000249   76-115   LDL receptor-like module  
  0.0000012   4-30   LDL receptor-like module  
jgi|Dappu1|16724|gw1.118.53.1   0.0000000000654   29-66   LDL receptor-like module  
  0.00000000432   115-149   LDL receptor-like module  
  0.0000000236   71-110   LDL receptor-like module  
  0.00000144   2-25   LDL receptor-like module  
jgi|Dappu1|17040|gw1.1856.3.1   0.0000000000628   34-71   LDL receptor-like module  
  0.00000000838   120-153   LDL receptor-like module  
  0.0000000236   76-115   LDL receptor-like module  
  0.00000128   4-30   LDL receptor-like module  
jgi|Dappu1|18492|gw1.6017.3.1   0.000000000122   35-70   LDL receptor-like module  
  0.00000000223   120-158   LDL receptor-like module  
  0.0000000038   76-114   LDL receptor-like module  
  0.00000301   3-30   LDL receptor-like module  
  0.0000327   166-200   LDL receptor-like module  
jgi|Dappu1|209471|estExt_Genewise1.C_120163   0.000000000314   75-115   LDL receptor-like module  
jgi|Dappu1|227615|estExt_fgenesh1_pg.C_790097   0.0000038   471-502   LDL receptor-like module  
jgi|Dappu1|229736|estExt_fgenesh1_pg.C_2620018   0.000000367   760-794   LDL receptor-like module  
jgi|Dappu1|232495|SNAP_00000553   0.00000000034   662-699   LDL receptor-like module  
  0.00000000209   753-791   LDL receptor-like module  
  0.000000157   532-567   LDL receptor-like module  
  0.000000223   390-422   LDL receptor-like module  
  0.00000089   791-827   LDL receptor-like module  
  0.0000017   822-881   LDL receptor-like module  
  0.0000102   708-744   LDL receptor-like module  
  0.0511   448-479   LDL receptor-like module  
jgi|Dappu1|232498|SNAP_00000556   0.000000000249   491-532   LDL receptor-like module  
  0.000000000445   172-210   LDL receptor-like module  
  0.000000000576   530-570   LDL receptor-like module  
  0.0000000017   578-619   LDL receptor-like module  
  0.00000000209   44-82   LDL receptor-like module  
  0.00000000628   335-373   LDL receptor-like module  
  0.00000000707   297-332   LDL receptor-like module  
  0.0000000157   209-247   LDL receptor-like module  
  0.000000034   256-295   LDL receptor-like module  
  0.000000114   1035-1069   LDL receptor-like module  
  0.000000262   1191-1226   LDL receptor-like module  
  0.000000367   1115-1146   LDL receptor-like module  
  0.000000432   1226-1263   LDL receptor-like module  
  0.000000615   100-139   LDL receptor-like module  
  0.00000124   994-1027   LDL receptor-like module  
  0.00000223   1153-1186   LDL receptor-like module  
  0.0000524   1073-1107   LDL receptor-like module  
jgi|Dappu1|234097|SNAP_00002155   0.000000982   498-530   LDL receptor-like module  
jgi|Dappu1|237406|SNAP_00005464   0.000000000432   105-142   LDL receptor-like module  
  0.00000000733   19-58   LDL receptor-like module  
  0.00000000825   61-98   LDL receptor-like module  
  0.000000017   950-989   LDL receptor-like module  
  0.000000694   151-188   LDL receptor-like module  
  0.0000287   899-930   LDL receptor-like module  
  0.0000733   191-229   LDL receptor-like module  
  0.000209   998-1034   LDL receptor-like module  
  0.0942   1055-1085   LDL receptor-like module  
jgi|Dappu1|247827|SNAP_00015885   0.000000000301   365-405   LDL receptor-like module  
jgi|Dappu1|248813|SNAP_00016871   0.0000236   557-579   LDL receptor-like module  
jgi|Dappu1|249169|SNAP_00017227   0.0000000236   25-63   LDL receptor-like module  
  0.0327   61-85   LDL receptor-like module  
jgi|Dappu1|254140|SNAP_00022198   0.00000746   55-95   LDL receptor-like module  
jgi|Dappu1|254628|SNAP_00022686   0.00000000113   96-132   LDL receptor-like module  
jgi|Dappu1|263601|SNAP_00031659   0.0000000406   677-711   LDL receptor-like module  
  0.00000157   46-81   LDL receptor-like module  
  0.000262   1100-1136   LDL receptor-like module  
jgi|Dappu1|263759|SNAP_00031817   0.00000144   37-77   LDL receptor-like module  
jgi|Dappu1|264276|SNAP_00032334   0.000000524   143-184   LDL receptor-like module  
jgi|Dappu1|266349|SNAP_00034407   0.0000628   46-71   LDL receptor-like module  
jgi|Dappu1|267420|SNAP_00035478   0.0000628   46-71   LDL receptor-like module  
jgi|Dappu1|267643|SNAP_00035701   0.00000000864   587-622   LDL receptor-like module  
  0.000000017   349-385   LDL receptor-like module  
  0.000000615   389-428   LDL receptor-like module  
  0.000122   431-470   LDL receptor-like module  
  0.00302   311-344   LDL receptor-like module  
  0.0072   550-571   LDL receptor-like module  
jgi|Dappu1|269232|SNAP_00037290   0.00000000851   579-614   LDL receptor-like module  
  0.0000000196   340-376   LDL receptor-like module  
  0.000000602   381-420   LDL receptor-like module  
  0.000123   423-462   LDL receptor-like module  
  0.00183   300-335   LDL receptor-like module  
  0.0072   542-563   LDL receptor-like module  
jgi|Dappu1|27153|gw1.45.86.1   0.000000000511   35-71   LDL receptor-like module  
  0.00000000838   120-153   LDL receptor-like module  
  0.0000000249   76-115   LDL receptor-like module  
  0.0000012   4-30   LDL receptor-like module  
jgi|Dappu1|290667|MRW_gw1.77.131.1   0.0000000301   20-60   LDL receptor-like module  
jgi|Dappu1|302236|PASA_GEN_16600007   0.00000000109   529-568   LDL receptor-like module  
jgi|Dappu1|304684|PASA_GEN_0300154   0.000000000017   1028-1068   LDL receptor-like module  
  0.000000000017   1157-1198   LDL receptor-like module  
  0.0000000000249   1208-1246   LDL receptor-like module  
  0.0000000000471   1072-1110   LDL receptor-like module  
  0.000000000877   1121-1158   LDL receptor-like module  
  0.00000000144   1358-1395   LDL receptor-like module  
  0.00000000406   991-1030   LDL receptor-like module  
  0.00000000458   1264-1301   LDL receptor-like module  
  0.000000157   1314-1346   LDL receptor-like module  
jgi|Dappu1|305193|PASA_GEN_35000001   0.000000000694   195-231   LDL receptor-like module  
  0.0000956   594-632   LDL receptor-like module  
jgi|Dappu1|306243|PASA_GEN_4700050   0.000000000275   150-184   LDL receptor-like module  
  0.000000000458   27-61   LDL receptor-like module  
  0.00000000123   67-106   LDL receptor-like module  
  0.0000000017   104-147   LDL receptor-like module  
  0.0000000183   191-227   LDL receptor-like module  
  0.000000314   319-354   LDL receptor-like module  
jgi|Dappu1|307561|PASA_GEN_6500041   0.00000000000327   3277-3317   LDL receptor-like module  
  0.000000000114   3648-3684   LDL receptor-like module  
  0.000000000119   3400-3440   LDL receptor-like module  
  0.000000000236   3448-3485   LDL receptor-like module  
  0.000000000772   2435-2477   LDL receptor-like module  
  0.00000000127   2802-2841   LDL receptor-like module  
  0.00000000144   3525-3562   LDL receptor-like module  
  0.0000000017   3601-3643   LDL receptor-like module  
  0.00000000209   3564-3602   LDL receptor-like module  
  0.00000000301   2622-2657   LDL receptor-like module  
  0.00000000471   879-920   LDL receptor-like module  
  0.00000000497   3483-3523   LDL receptor-like module  
  0.00000000654   2753-2790   LDL receptor-like module  
  0.00000000668   2476-2511   LDL receptor-like module  
  0.00000000812   2398-2437   LDL receptor-like module  
  0.00000000838   796-837   LDL receptor-like module  
  0.0000000144   3364-3399   LDL receptor-like module  
  0.000000017   966-1007   LDL receptor-like module  
  0.0000000393   2661-2698   LDL receptor-like module  
  0.0000000524   2529-2560   LDL receptor-like module  
  0.000000124   2713-2749   LDL receptor-like module  
  0.000000144   754-790   LDL receptor-like module  
  0.000000249   3241-3278   LDL receptor-like module  
  0.000000785   1012-1049   LDL receptor-like module  
  0.00000445   2578-2619   LDL receptor-like module  
  0.00000969   3316-3362   LDL receptor-like module  
  0.0000196   841-878   LDL receptor-like module  
  0.0000877   922-960   LDL receptor-like module  
jgi|Dappu1|308138|PASA_GEN_7500047   0.000000000393   39-76   LDL receptor-like module  
  0.00000000432   906-942   LDL receptor-like module  
  0.0000000327   3-32   LDL receptor-like module  
  0.0000000393   991-1029   LDL receptor-like module  
  0.0000000471   948-986   LDL receptor-like module  
  0.000000196   1132-1171   LDL receptor-like module  
  0.0000011   84-120   LDL receptor-like module  
  0.0000262   869-901   LDL receptor-like module  
  0.000288   127-162   LDL receptor-like module  
  0.000367   1037-1073   LDL receptor-like module  
  0.000576   1089-1126   LDL receptor-like module  
jgi|Dappu1|309273|PASA_GEN_9400015   0.000000000223   193-229   LDL receptor-like module  
jgi|Dappu1|309932|NCBI_GNO_0100465   0.00000000589   222-260   LDL receptor-like module  
jgi|Dappu1|310287|NCBI_GNO_0200224   0.0000000144   1311-1346   LDL receptor-like module  
  0.00000017   1259-1309   LDL receptor-like module  
  0.00000916   1346-1378   LDL receptor-like module  
jgi|Dappu1|310333|NCBI_GNO_0200270   0.00000000746   36-69   LDL receptor-like module  
  0.0000393   1076-1113   LDL receptor-like module  
jgi|Dappu1|315174|NCBI_GNO_1300236   0.000000000406   127-164   LDL receptor-like module  
jgi|Dappu1|316225|NCBI_GNO_1700019   0.000000000615   751-787   LDL receptor-like module  
  0.0000000144   870-906   LDL receptor-like module  
  0.0000000432   1019-1058   LDL receptor-like module  
jgi|Dappu1|317027|NCBI_GNO_1900024   0.00000000484   1136-1172   LDL receptor-like module  
  0.0000000877   47-88   LDL receptor-like module  
  0.000000301   599-640   LDL receptor-like module  
  0.000000681   1085-1120   LDL receptor-like module  
  0.0000017   530-564   LDL receptor-like module  
  0.00000196   1178-1221   LDL receptor-like module  
  0.0288   25-44   LDL receptor-like module  
  0.0314   647-669   LDL receptor-like module  
jgi|Dappu1|319571|NCBI_GNO_3000052   0.0000000314   67-105   LDL receptor-like module  
jgi|Dappu1|320142|NCBI_GNO_3300158   0.0000537   642-675   LDL receptor-like module  
jgi|Dappu1|320143|NCBI_GNO_3300159   0.0000275   695-732   LDL receptor-like module  
jgi|Dappu1|320145|NCBI_GNO_3300161   0.0000641   671-704   LDL receptor-like module  
jgi|Dappu1|326443|NCBI_GNO_7900097   0.000000393   461-495   LDL receptor-like module  
  0.000877   418-457   LDL receptor-like module  
jgi|Dappu1|327753|NCBI_GNO_9400063   0.00000000105   107-143   LDL receptor-like module  
jgi|Dappu1|327801|NCBI_GNO_9500037   0.00000000000838   111-149   LDL receptor-like module  
  0.000000000929   71-108   LDL receptor-like module  
  0.00000000327   250-293   LDL receptor-like module  
  0.00000000497   204-240   LDL receptor-like module  
  0.00000000537   163-199   LDL receptor-like module  
  0.000000011   291-332   LDL receptor-like module  
  0.00000249   31-66   LDL receptor-like module  
jgi|Dappu1|330728|NCBI_GNO_14600041   0.00000131   119-142   LDL receptor-like module  
jgi|Dappu1|331029|NCBI_GNO_15500028   0.0000000000196   171-209   LDL receptor-like module  
  0.00000000367   295-329   LDL receptor-like module  
  0.000000288   255-287   LDL receptor-like module  
  0.0000524   211-250   LDL receptor-like module  
jgi|Dappu1|332908|NCBI_GNO_21200002   0.000012   214-241   LDL receptor-like module  
  0.0000458   184-207   LDL receptor-like module  
jgi|Dappu1|334828|NCBI_GNO_41900003   0.00000458   99-125   LDL receptor-like module  
  0.0000183   67-91   LDL receptor-like module  
jgi|Dappu1|338542|NCBI_GNO_242000001   0.00000589   25-51   LDL receptor-like module  
jgi|Dappu1|43397|e_gw1.6.377.1   0.0000000000209   70-110   LDL receptor-like module  
  0.0000000000484   935-976   LDL receptor-like module  
  0.000000000353   974-1013   LDL receptor-like module  
  0.000000000471   2620-2662   LDL receptor-like module  
  0.000000000511   2928-2967   LDL receptor-like module  
  0.000000000694   3454-3494   LDL receptor-like module  
  0.000000000982   1018-1056   LDL receptor-like module  
  0.00000000196   1054-1096   LDL receptor-like module  
  0.00000000236   2886-2920   LDL receptor-like module  
  0.00000000262   2584-2622   LDL receptor-like module  
  0.00000000589   3540-3577   LDL receptor-like module  
  0.00000000798   3497-3535   LDL receptor-like module  
  0.00000000812   2750-2788   LDL receptor-like module  
  0.00000000929   2794-2830   LDL receptor-like module  
  0.0000000262   3793-3828   LDL receptor-like module  
  0.0000000301   3666-3703   LDL receptor-like module  
  0.0000000314   2708-2747   LDL receptor-like module  
  0.0000000419   2976-3014   LDL receptor-like module  
  0.0000000589   1142-1179   LDL receptor-like module  
  0.0000000628   900-934   LDL receptor-like module  
  0.0000000681   3751-3786   LDL receptor-like module  
  0.0000000733   3707-3745   LDL receptor-like module  
  0.0000000785   3837-3874   LDL receptor-like module  
  0.0000000812   1186-1222   LDL receptor-like module  
  0.0000000864   1103-1139   LDL receptor-like module  
  0.000000105   3416-3453   LDL receptor-like module  
  0.000000122   32-70   LDL receptor-like module  
  0.000000275   3623-3661   LDL receptor-like module  
  0.000000484   3575-3619   LDL receptor-like module  
  0.0000011   2661-2695   LDL receptor-like module  
  0.00000458   2838-2879   LDL receptor-like module  
  0.0000128   1-27   LDL receptor-like module  
jgi|Dappu1|44063|e_gw1.6.147.1   0.00000000000288   1-32   LDL receptor-like module  
  0.00000000249   35-80   LDL receptor-like module  
jgi|Dappu1|52974|e_gw1.32.142.1   0.0000000733   274-313   LDL receptor-like module  
jgi|Dappu1|5691|gw1.111.25.1   0.00000000367   1-35   LDL receptor-like module  
  0.000000106   39-78   LDL receptor-like module  
  0.0000223   81-120   LDL receptor-like module  
  0.0000576   175-214   LDL receptor-like module  
jgi|Dappu1|61405|e_gw1.100.116.1   0.000000000131   46-84   LDL receptor-like module  
  0.000000000157   127-163   LDL receptor-like module  
  0.000000000275   86-123   LDL receptor-like module  
  0.00000000353   203-239   LDL receptor-like module  
  0.00000000393   9-44   LDL receptor-like module  
jgi|Dappu1|65845|e_gw1.262.20.1   0.000000157   232-264   LDL receptor-like module  
jgi|Dappu1|9229|gw1.727.1.1   0.00000000288   1-35   LDL receptor-like module  
  0.0000654   62-84   LDL receptor-like module  
jgi|Dappu1|98236|fgenesh1_pg.C_scaffold_9000029   0.000000275   131-163   LDL receptor-like module  
 
Weak hits:
jgi|Dappu1|194601|estExt_Genewise1Plus.C_130130   0.000668   49-83   LDL receptor-like module  
  0.00223   85-124   LDL receptor-like module  
jgi|Dappu1|220982|estExt_fgenesh1_pg.C_30506   0.000255   82-116   LDL receptor-like module  
jgi|Dappu1|319843|NCBI_GNO_3100140   0.000668   176-205   LDL receptor-like module  
jgi|Dappu1|320144|NCBI_GNO_3300160   0.000124   705-737   LDL receptor-like module  
jgi|Dappu1|325447|NCBI_GNO_7000066   0.0025   501-527   LDL receptor-like module  
jgi|Dappu1|331990|NCBI_GNO_17800016   0.00182   635-662   LDL receptor-like module  
jgi|Dappu1|51037|e_gw1.24.139.1   0.00288   640-674   LDL receptor-like module  
jgi|Dappu1|97244|fgenesh1_pg.C_scaffold_6000311   0.0011   363-400   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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