SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Gallus gallus 76_4 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Gallus gallus 76_4

Assignment details

(show help)


Gallus gallus 76_4 has 222 significant domains in 45 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGALP00000002025   0.000000000301   473-511   LDL receptor-like module  
  0.000000000432   440-475   LDL receptor-like module  
  0.00000000131   509-545   LDL receptor-like module  
  0.000000839   552-592   LDL receptor-like module  
ENSGALP00000006464   0.0000000288   296-332   LDL receptor-like module  
ENSGALP00000007222   0.0000000111   22-59   LDL receptor-like module  
ENSGALP00000007738   0.00000000000654   153-191   LDL receptor-like module  
  0.0000000000157   433-471   LDL receptor-like module  
  0.0000000236   198-239   LDL receptor-like module  
  0.00000101   394-432   LDL receptor-like module  
  0.00000628   356-393   LDL receptor-like module  
ENSGALP00000007857   0.0000000000681   1612-1649   LDL receptor-like module  
  0.000000000524   2475-2514   LDL receptor-like module  
  0.000000000877   1398-1435   LDL receptor-like module  
  0.00000000183   1553-1592   LDL receptor-like module  
  0.00000000275   1477-1514   LDL receptor-like module  
  0.0000000072   2534-2571   LDL receptor-like module  
  0.0000000102   1514-1548   LDL receptor-like module  
  0.000000012   1432-1474   LDL receptor-like module  
  0.0000000314   1359-1394   LDL receptor-like module  
  0.0000000497   1698-1732   LDL receptor-like module  
  0.00000327   1652-1688   LDL receptor-like module  
  0.00000497   2322-2359   LDL receptor-like module  
  0.000249   1746-1774   LDL receptor-like module  
ENSGALP00000009460   0.000000000017   25-67   LDL receptor-like module  
ENSGALP00000010625   0.000000000000262   1406-1446   LDL receptor-like module  
  0.000000000055   1313-1351   LDL receptor-like module  
  0.0000000000772   1359-1395   LDL receptor-like module  
  0.000000000102   1187-1225   LDL receptor-like module  
  0.000000000327   1144-1185   LDL receptor-like module  
  0.00000000144   1067-1105   LDL receptor-like module  
  0.000000038   1462-1499   LDL receptor-like module  
  0.0000000445   1229-1262   LDL receptor-like module  
  0.000000209   1112-1145   LDL receptor-like module  
  0.00000223   1505-1540   LDL receptor-like module  
  0.00000681   1266-1302   LDL receptor-like module  
ENSGALP00000011315   0.000000000602   1173-1208   LDL receptor-like module  
  0.00000000113   1135-1171   LDL receptor-like module  
  0.00000000275   1094-1134   LDL receptor-like module  
ENSGALP00000011316   0.000000000654   1303-1338   LDL receptor-like module  
  0.00000000124   1265-1301   LDL receptor-like module  
  0.00000000314   1224-1264   LDL receptor-like module  
ENSGALP00000011862   0.0000327   43-67   LDL receptor-like module  
ENSGALP00000011964   0.000000511   52-89   LDL receptor-like module  
ENSGALP00000012805   0.0000000000602   25-61   LDL receptor-like module  
  0.000000000301   106-143   LDL receptor-like module  
  0.000000000654   66-103   LDL receptor-like module  
ENSGALP00000012916   0.000000000183   203-242   LDL receptor-like module  
  0.000000000262   155-195   LDL receptor-like module  
  0.0000458   245-282   LDL receptor-like module  
ENSGALP00000013486   0.0000000000223   275-315   LDL receptor-like module  
  0.000000000131   239-277   LDL receptor-like module  
  0.000000000144   320-356   LDL receptor-like module  
  0.000000000196   154-193   LDL receptor-like module  
  0.000000000367   77-116   LDL receptor-like module  
  0.00000000367   198-236   LDL receptor-like module  
  0.00000000576   116-153   LDL receptor-like module  
  0.0000017   37-79   LDL receptor-like module  
ENSGALP00000013785   0.00000000301   343-381   LDL receptor-like module  
ENSGALP00000013830   0.0000000000301   559-597   LDL receptor-like module  
  0.00000000288   341-382   LDL receptor-like module  
  0.00000013   119-155   LDL receptor-like module  
ENSGALP00000014614   0.0000000262   456-496   LDL receptor-like module  
  0.000000301   236-274   LDL receptor-like module  
ENSGALP00000014686   0.0000131   15-47   LDL receptor-like module  
ENSGALP00000015337   0.00000034   31-68   LDL receptor-like module  
ENSGALP00000016512   0.00000000000223   252-291   LDL receptor-like module  
  0.00000000000524   49-86   LDL receptor-like module  
  0.0000000000301   167-206   LDL receptor-like module  
  0.0000000000511   290-330   LDL receptor-like module  
  0.000000000144   206-243   LDL receptor-like module  
  0.000000000563   88-126   LDL receptor-like module  
  0.0000000038   125-167   LDL receptor-like module  
  0.000000055   335-372   LDL receptor-like module  
ENSGALP00000017370   0.000000000017   160-196   LDL receptor-like module  
  0.0000000000196   125-161   LDL receptor-like module  
  0.000000000034   208-246   LDL receptor-like module  
  0.0000000000484   244-285   LDL receptor-like module  
  0.000000000301   4-41   LDL receptor-like module  
  0.00000000327   40-79   LDL receptor-like module  
  0.0000000183   79-122   LDL receptor-like module  
  0.000000101   290-325   LDL receptor-like module  
ENSGALP00000017612   0.0000000294   104-145   LDL receptor-like module  
ENSGALP00000017617   0.000000445   117-150   LDL receptor-like module  
ENSGALP00000017630   0.00000000000432   2719-2761   LDL receptor-like module  
  0.0000000000144   1050-1087   LDL receptor-like module  
  0.0000000000223   9-50   LDL receptor-like module  
  0.0000000000275   89-131   LDL receptor-like module  
  0.000000000055   1250-1291   LDL receptor-like module  
  0.0000000000602   2888-2924   LDL receptor-like module  
  0.0000000000746   1091-1129   LDL receptor-like module  
  0.0000000000969   2842-2881   LDL receptor-like module  
  0.000000000109   3611-3652   LDL receptor-like module  
  0.000000000131   2970-3013   LDL receptor-like module  
  0.000000000288   1007-1045   LDL receptor-like module  
  0.000000000471   3011-3053   LDL receptor-like module  
  0.000000000497   3910-3947   LDL receptor-like module  
  0.000000000995   205-244   LDL receptor-like module  
  0.00000000144   170-206   LDL receptor-like module  
  0.00000000144   3782-3820   LDL receptor-like module  
  0.00000000144   3495-3531   LDL receptor-like module  
  0.00000000157   2683-2722   LDL receptor-like module  
  0.00000000196   3704-3739   LDL receptor-like module  
  0.00000000236   1132-1169   LDL receptor-like module  
  0.00000000275   1214-1249   LDL receptor-like module  
  0.0000000038   3571-3613   LDL receptor-like module  
  0.00000000707   3533-3574   LDL receptor-like module  
  0.00000000864   46-89   LDL receptor-like module  
  0.0000000101   3825-3861   LDL receptor-like module  
  0.0000000157   3058-3095   LDL receptor-like module  
  0.0000000196   2798-2844   LDL receptor-like module  
  0.0000000288   3738-3778   LDL receptor-like module  
  0.0000000301   2926-2970   LDL receptor-like module  
  0.0000000314   1170-1208   LDL receptor-like module  
  0.000000249   135-168   LDL receptor-like module  
  0.000000668   3868-3905   LDL receptor-like module  
  0.000000812   3661-3701   LDL receptor-like module  
  0.00000102   1295-1331   LDL receptor-like module  
  0.00000196   2760-2802   LDL receptor-like module  
ENSGALP00000018818   0.000000000877   1330-1368   LDL receptor-like module  
  0.00000000209   1251-1291   LDL receptor-like module  
  0.00000000406   1292-1328   LDL receptor-like module  
ENSGALP00000019783   0.00000000114   212-250   LDL receptor-like module  
  0.00000000497   252-296   LDL receptor-like module  
ENSGALP00000020245   0.0000000000956   1006-1048   LDL receptor-like module  
  0.000000000262   3757-3794   LDL receptor-like module  
  0.000000000275   1047-1086   LDL receptor-like module  
  0.000000000288   1130-1166   LDL receptor-like module  
  0.000000000288   1091-1129   LDL receptor-like module  
  0.000000000419   3478-3522   LDL receptor-like module  
  0.000000000432   967-1006   LDL receptor-like module  
  0.000000000563   3601-3637   LDL receptor-like module  
  0.000000000628   3718-3755   LDL receptor-like module  
  0.000000000838   3880-3921   LDL receptor-like module  
  0.000000000995   2885-2921   LDL receptor-like module  
  0.00000000131   3016-3057   LDL receptor-like module  
  0.00000000144   3799-3843   LDL receptor-like module  
  0.00000000209   2805-2842   LDL receptor-like module  
  0.00000000236   2928-2962   LDL receptor-like module  
  0.00000000288   3561-3597   LDL receptor-like module  
  0.00000000314   3440-3475   LDL receptor-like module  
  0.00000000327   3678-3713   LDL receptor-like module  
  0.0000000038   1178-1214   LDL receptor-like module  
  0.00000000484   2671-2712   LDL receptor-like module  
  0.0000000105   2716-2751   LDL receptor-like module  
  0.0000000126   3635-3675   LDL receptor-like module  
  0.0000000144   3520-3557   LDL receptor-like module  
  0.0000000183   2964-3005   LDL receptor-like module  
  0.000000089   155-191   LDL receptor-like module  
  0.00000011   2845-2887   LDL receptor-like module  
  0.000000327   1225-1257   LDL receptor-like module  
  0.000000393   2635-2673   LDL receptor-like module  
  0.000000497   1260-1296   LDL receptor-like module  
  0.000000825   202-235   LDL receptor-like module  
  0.000000982   2768-2801   LDL receptor-like module  
  0.0000157   3845-3877   LDL receptor-like module  
ENSGALP00000020367   0.00000419   469-501   LDL receptor-like module  
  0.0000419   435-467   LDL receptor-like module  
ENSGALP00000022274   0.0000000236   291-327   LDL receptor-like module  
ENSGALP00000022844   0.00000000126   656-697   LDL receptor-like module  
  0.00000000157   388-429   LDL receptor-like module  
  0.00000000654   347-385   LDL receptor-like module  
  0.00000000746   581-618   LDL receptor-like module  
  0.0000000128   309-344   LDL receptor-like module  
  0.000000017   275-309   LDL receptor-like module  
  0.00000128   622-654   LDL receptor-like module  
ENSGALP00000023901   0.00000523   78-119   LDL receptor-like module  
ENSGALP00000023910   0.0000000131   140-173   LDL receptor-like module  
ENSGALP00000024779   0.0000000000196   465-511   LDL receptor-like module  
  0.0000000183   540-579   LDL receptor-like module  
  0.0000357   499-536   LDL receptor-like module  
ENSGALP00000024780   0.000000224   332-370   LDL receptor-like module  
  0.000641   288-325   LDL receptor-like module  
ENSGALP00000025859   0.0000000000183   534-572   LDL receptor-like module  
  0.00000000602   249-285   LDL receptor-like module  
  0.000000127   296-338   LDL receptor-like module  
  0.000000131   495-533   LDL receptor-like module  
  0.00000106   458-495   LDL receptor-like module  
ENSGALP00000025956   0.00000000458   100-142   LDL receptor-like module  
ENSGALP00000026009   0.0000000196   133-170   LDL receptor-like module  
ENSGALP00000031163   0.000000000615   54-90   LDL receptor-like module  
ENSGALP00000032390   0.0000000236   42-80   LDL receptor-like module  
  0.00000288   93-124   LDL receptor-like module  
  0.00275   130-170   LDL receptor-like module  
ENSGALP00000034553   0.00000000183   30-71   LDL receptor-like module  
ENSGALP00000037133   0.0000000000707   1089-1129   LDL receptor-like module  
  0.000000000406   1135-1173   LDL receptor-like module  
  0.0000000017   143-183   LDL receptor-like module  
  0.00000000196   74-109   LDL receptor-like module  
  0.000000038   972-1011   LDL receptor-like module  
  0.0000000497   192-232   LDL receptor-like module  
  0.0000000681   1223-1262   LDL receptor-like module  
  0.0000000916   1178-1217   LDL receptor-like module  
  0.000000353   1014-1052   LDL receptor-like module  
  0.000000733   108-145   LDL receptor-like module  
  0.00000157   1060-1091   LDL receptor-like module  
  0.0000157   33-66   LDL receptor-like module  
ENSGALP00000039646   0.0000000275   458-498   LDL receptor-like module  
  0.000000301   235-273   LDL receptor-like module  
ENSGALP00000039648   0.0000000262   457-497   LDL receptor-like module  
  0.000000288   237-275   LDL receptor-like module  
ENSGALP00000040482   0.000000000851   31-72   LDL receptor-like module  
ENSGALP00000040865   0.0000000000733   2508-2548   LDL receptor-like module  
  0.00000000013   2592-2637   LDL receptor-like module  
  0.000000000262   2308-2348   LDL receptor-like module  
  0.000000000301   2426-2467   LDL receptor-like module  
  0.000000000419   1636-1672   LDL receptor-like module  
  0.000000000576   2470-2509   LDL receptor-like module  
  0.000000000615   1679-1714   LDL receptor-like module  
  0.000000000694   8-53   LDL receptor-like module  
  0.00000000113   2550-2586   LDL receptor-like module  
  0.00000000209   1761-1797   LDL receptor-like module  
  0.00000000262   1501-1542   LDL receptor-like module  
  0.00000000262   2390-2425   LDL receptor-like module  
  0.00000000406   1718-1753   LDL receptor-like module  
  0.00000000668   2350-2388   LDL receptor-like module  
  0.00000000916   1541-1582   LDL receptor-like module  
  0.0000000102   1799-1838   LDL receptor-like module  
  0.0000000157   2271-2305   LDL receptor-like module  
  0.0000000262   2683-2716   LDL receptor-like module  
  0.0000000877   89-124   LDL receptor-like module  
  0.000000144   1598-1630   LDL receptor-like module  
  0.000000353   1465-1503   LDL receptor-like module  
  0.000000497   52-86   LDL receptor-like module  
  0.0000249   2633-2671   LDL receptor-like module  
 
Weak hits:
ENSGALP00000014021   0.0183   238-266   LDL receptor-like module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a LDL receptor-like module domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.