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LDL receptor-like module superfamily domain assignments
in
Lucilia cuprina

Assignment details

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Lucilia cuprina has 189 significant domains in 33 proteins.

     

Sequence ID   Evalue   Region   Family  
KNC20720   0.0000707   757-795   LDL receptor-like module  
KNC20826   0.0000000000903   507-546   LDL receptor-like module  
  0.000000000209   374-419   LDL receptor-like module  
  0.00000000262   335-370   LDL receptor-like module  
  0.00000000353   463-500   LDL receptor-like module  
  0.000000432   413-460   LDL receptor-like module  
  0.00000458   299-330   LDL receptor-like module  
  0.00000759   243-279   LDL receptor-like module  
KNC21054   0.000000524   2374-2407   LDL receptor-like module  
  0.000000681   2484-2521   LDL receptor-like module  
  0.00000196   984-1023   LDL receptor-like module  
  0.00000301   1835-1872   LDL receptor-like module  
  0.0000034   1495-1530   LDL receptor-like module  
  0.0000131   1768-1805   LDL receptor-like module  
  0.0000301   2413-2448   LDL receptor-like module  
KNC21056   0.0000275   48-77   LDL receptor-like module  
KNC22043   0.0000000000122   107-147   LDL receptor-like module  
  0.0000000000393   73-109   LDL receptor-like module  
  0.000000000209   31-70   LDL receptor-like module  
  0.0000825   153-192   LDL receptor-like module  
KNC22663   0.00000000000432   2803-2846   LDL receptor-like module  
  0.00000000000681   1184-1226   LDL receptor-like module  
  0.0000000000825   2928-2971   LDL receptor-like module  
  0.000000000196   3641-3681   LDL receptor-like module  
  0.000000000249   343-384   LDL receptor-like module  
  0.000000000471   3853-3889   LDL receptor-like module  
  0.000000000654   1226-1264   LDL receptor-like module  
  0.000000000785   168-205   LDL receptor-like module  
  0.00000000196   3893-3930   LDL receptor-like module  
  0.00000000275   2768-2806   LDL receptor-like module  
  0.00000000327   3153-3187   LDL receptor-like module  
  0.00000000432   3109-3148   LDL receptor-like module  
  0.00000000615   1270-1307   LDL receptor-like module  
  0.0000000089   3726-3764   LDL receptor-like module  
  0.00000000929   3068-3104   LDL receptor-like module  
  0.00000000982   3936-3974   LDL receptor-like module  
  0.0000000117   1306-1347   LDL receptor-like module  
  0.0000000144   1393-1429   LDL receptor-like module  
  0.0000000157   2977-3013   LDL receptor-like module  
  0.0000000223   1150-1185   LDL receptor-like module  
  0.0000000262   308-345   LDL receptor-like module  
  0.000000034   3684-3722   LDL receptor-like module  
  0.0000000484   3979-4015   LDL receptor-like module  
  0.0000000497   1358-1390   LDL receptor-like module  
  0.0000000851   2847-2888   LDL receptor-like module  
  0.0000000851   3810-3848   LDL receptor-like module  
  0.000000106   4023-4060   LDL receptor-like module  
  0.00000017   2892-2930   LDL receptor-like module  
  0.000000209   3603-3638   LDL receptor-like module  
  0.000000353   1437-1472   LDL receptor-like module  
  0.00000107   3762-3806   LDL receptor-like module  
  0.00000209   207-253   LDL receptor-like module  
  0.000055   3021-3060   LDL receptor-like module  
  0.0000589   279-305   LDL receptor-like module  
KNC23138   0.0000000000038   280-317   LDL receptor-like module  
  0.0000000000576   236-270   LDL receptor-like module  
KNC23782   0.00000314   877-910   LDL receptor-like module  
KNC24096   0.000000017   44-82   LDL receptor-like module  
KNC25227   0.00000877   500-541   LDL receptor-like module  
KNC25375   0.000000011   229-263   LDL receptor-like module  
KNC26180   0.0000000000157   2734-2773   LDL receptor-like module  
  0.000000000196   2819-2855   LDL receptor-like module  
  0.000000000236   2650-2690   LDL receptor-like module  
  0.000000000406   2776-2811   LDL receptor-like module  
  0.000000000602   1834-1877   LDL receptor-like module  
  0.00000000122   1798-1837   LDL receptor-like module  
  0.00000000123   3015-3053   LDL receptor-like module  
  0.00000000123   2933-2970   LDL receptor-like module  
  0.00000000615   1877-1914   LDL receptor-like module  
  0.00000000772   2968-3011   LDL receptor-like module  
  0.00000000851   2853-2893   LDL receptor-like module  
  0.0000000157   1960-2004   LDL receptor-like module  
  0.0000000196   358-396   LDL receptor-like module  
  0.0000000223   2180-2218   LDL receptor-like module  
  0.0000000393   2895-2934   LDL receptor-like module  
  0.0000000589   2614-2648   LDL receptor-like module  
  0.0000000929   2093-2129   LDL receptor-like module  
  0.000000249   2041-2075   LDL receptor-like module  
  0.000000301   1926-1956   LDL receptor-like module  
  0.000000301   2007-2039   LDL receptor-like module  
  0.00000288   270-302   LDL receptor-like module  
  0.00000288   224-261   LDL receptor-like module  
  0.00000602   408-442   LDL receptor-like module  
  0.00000628   2140-2175   LDL receptor-like module  
  0.00000746   305-342   LDL receptor-like module  
  0.0000798   2694-2735   LDL receptor-like module  
KNC26298   0.00000000012   44-81   LDL receptor-like module  
  0.000000000733   1106-1142   LDL receptor-like module  
  0.000000000798   1060-1096   LDL receptor-like module  
  0.00000000838   1146-1184   LDL receptor-like module  
  0.0000000119   142-179   LDL receptor-like module  
  0.0000000196   1237-1273   LDL receptor-like module  
  0.0000000275   1013-1052   LDL receptor-like module  
  0.0000000812   181-222   LDL receptor-like module  
  0.000000314   972-1005   LDL receptor-like module  
  0.0000017   229-261   LDL receptor-like module  
  0.00000877   85-124   LDL receptor-like module  
  0.0000126   1289-1324   LDL receptor-like module  
KNC26442   0.00000000107   526-565   LDL receptor-like module  
KNC27261   0.000000038   1773-1813   LDL receptor-like module  
  0.000000641   1630-1663   LDL receptor-like module  
KNC27667   0.000000223   60-91   LDL receptor-like module  
KNC27685   0.000000000183   165-205   LDL receptor-like module  
KNC28501   0.0000000119   1306-1342   LDL receptor-like module  
  0.000000327   1255-1304   LDL receptor-like module  
  0.0000017   1345-1380   LDL receptor-like module  
KNC28525   0.00000000903   158-194   LDL receptor-like module  
KNC28526   0.00000000576   120-157   LDL receptor-like module  
KNC29905   0.00000017   430-461   LDL receptor-like module  
KNC30893   0.00000000995   24-60   LDL receptor-like module  
KNC31237   0.000000000223   776-815   LDL receptor-like module  
  0.0000000563   547-584   LDL receptor-like module  
  0.000000628   585-622   LDL receptor-like module  
KNC31657   0.000000000017   3439-3478   LDL receptor-like module  
  0.000000000209   3354-3395   LDL receptor-like module  
  0.000000000223   3477-3515   LDL receptor-like module  
  0.000000000353   3525-3561   LDL receptor-like module  
  0.000000000707   2539-2582   LDL receptor-like module  
  0.00000000144   3638-3674   LDL receptor-like module  
  0.00000000144   2503-2542   LDL receptor-like module  
  0.00000000144   3720-3758   LDL receptor-like module  
  0.0000000072   2582-2619   LDL receptor-like module  
  0.0000000106   3673-3716   LDL receptor-like module  
  0.0000000123   3558-3598   LDL receptor-like module  
  0.0000000196   2665-2709   LDL receptor-like module  
  0.0000000223   1063-1101   LDL receptor-like module  
  0.0000000249   2885-2923   LDL receptor-like module  
  0.0000000458   3600-3639   LDL receptor-like module  
  0.0000000746   3319-3353   LDL receptor-like module  
  0.000000109   2798-2834   LDL receptor-like module  
  0.000000275   2746-2780   LDL receptor-like module  
  0.000000353   2631-2661   LDL receptor-like module  
  0.000000353   2712-2743   LDL receptor-like module  
  0.00000055   25-63   LDL receptor-like module  
  0.00000327   929-966   LDL receptor-like module  
  0.0000034   975-1007   LDL receptor-like module  
  0.00000707   1113-1147   LDL receptor-like module  
  0.00000733   2845-2880   LDL receptor-like module  
  0.0000089   1010-1047   LDL receptor-like module  
  0.0000929   3399-3440   LDL receptor-like module  
KNC31690   0.0000000000497   2074-2110   LDL receptor-like module  
  0.000000000127   1722-1762   LDL receptor-like module  
  0.000000000128   1303-1340   LDL receptor-like module  
  0.000000000929   2030-2066   LDL receptor-like module  
  0.00000000183   1122-1166   LDL receptor-like module  
  0.00000000694   1014-1053   LDL receptor-like module  
  0.0000000111   1989-2026   LDL receptor-like module  
  0.0000000157   1253-1291   LDL receptor-like module  
  0.0000000589   1513-1552   LDL receptor-like module  
  0.0000000602   4186-4229   LDL receptor-like module  
  0.0000000995   1436-1472   LDL receptor-like module  
  0.000000144   1683-1718   LDL receptor-like module  
  0.00000017   1357-1395   LDL receptor-like module  
  0.000000196   1398-1435   LDL receptor-like module  
  0.000000419   841-880   LDL receptor-like module  
  0.000000471   928-969   LDL receptor-like module  
  0.000000524   1643-1680   LDL receptor-like module  
  0.000000851   1806-1843   LDL receptor-like module  
  0.00000113   805-842   LDL receptor-like module  
  0.00000144   1214-1250   LDL receptor-like module  
  0.00000236   1605-1643   LDL receptor-like module  
  0.0000038   661-697   LDL receptor-like module  
  0.00000511   885-922   LDL receptor-like module  
  0.0000288   1563-1599   LDL receptor-like module  
  0.0000563   969-1004   LDL receptor-like module  
KNC31820   0.0000288   69-95   LDL receptor-like module  
KNC32971   0.00000000111   1363-1404   LDL receptor-like module  
  0.00000000877   626-666   LDL receptor-like module  
  0.0000000114   1674-1714   LDL receptor-like module  
  0.0000000249   72-108   LDL receptor-like module  
  0.0000000275   156-195   LDL receptor-like module  
  0.0000000432   843-879   LDL receptor-like module  
  0.0000000537   800-836   LDL receptor-like module  
  0.0000000628   30-71   LDL receptor-like module  
  0.0000000707   673-710   LDL receptor-like module  
  0.000000367   119-154   LDL receptor-like module  
  0.00000131   890-925   LDL receptor-like module  
  0.00000183   932-965   LDL receptor-like module  
KNC32980   0.000000000275   61-102   LDL receptor-like module  
  0.000000000275   152-193   LDL receptor-like module  
  0.0000000301   24-58   LDL receptor-like module  
  0.0000000537   119-154   LDL receptor-like module  
KNC33098   0.0000000000798   386-422   LDL receptor-like module  
KNC34228   0.00000000707   31-70   LDL receptor-like module  
KNC34711   0.00000000288   1833-1870   LDL receptor-like module  
  0.000000017   1789-1823   LDL receptor-like module  
  0.0000000327   1877-1918   LDL receptor-like module  
KNC34716   0.0000000249   465-498   LDL receptor-like module  
KNC34858   0.000000393   118-154   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

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