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  Home > Genomes > Ailuropoda melanoleuca 76_1 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Ailuropoda melanoleuca 76_1

Assignment details

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Ailuropoda melanoleuca 76_1 has 261 significant domains in 52 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMEP00000000530   0.00000000106   117-154   LDL receptor-like module  
  0.0000000249   159-196   LDL receptor-like module  
  0.0000000406   203-238   LDL receptor-like module  
  0.0000000458   242-277   LDL receptor-like module  
  0.0000000746   38-76   LDL receptor-like module  
  0.000000353   83-115   LDL receptor-like module  
  0.00000694   1-35   LDL receptor-like module  
ENSAMEP00000001463   0.0000000000327   1303-1341   LDL receptor-like module  
  0.00000000563   1228-1266   LDL receptor-like module  
  0.00877   1268-1290   LDL receptor-like module  
ENSAMEP00000001487   0.000000000301   997-1033   LDL receptor-like module  
  0.00000000445   920-958   LDL receptor-like module  
  0.00183   960-992   LDL receptor-like module  
ENSAMEP00000002044   0.000000000694   1175-1213   LDL receptor-like module  
  0.00000000115   1096-1136   LDL receptor-like module  
  0.0000000034   1137-1173   LDL receptor-like module  
ENSAMEP00000002120   0.00000000353   155-193   LDL receptor-like module  
ENSAMEP00000002377   0.00000000144   463-500   LDL receptor-like module  
  0.00000000275   499-534   LDL receptor-like module  
  0.00000000288   428-463   LDL receptor-like module  
  0.00000121   540-579   LDL receptor-like module  
ENSAMEP00000002423   0.0000000367   37-74   LDL receptor-like module  
ENSAMEP00000002773   0.00000000432   2211-2249   LDL receptor-like module  
  0.00000000524   1409-1446   LDL receptor-like module  
  0.00000000537   2435-2471   LDL receptor-like module  
  0.0000000183   1484-1522   LDL receptor-like module  
  0.000000034   1368-1404   LDL receptor-like module  
  0.0000000511   1445-1479   LDL receptor-like module  
  0.00000055   2358-2397   LDL receptor-like module  
  0.0000419   1647-1673   LDL receptor-like module  
  0.00301   1600-1633   LDL receptor-like module  
ENSAMEP00000003488   0.00000000367   558-595   LDL receptor-like module  
  0.00000000654   321-359   LDL receptor-like module  
  0.000000017   633-672   LDL receptor-like module  
  0.0000000275   248-285   LDL receptor-like module  
  0.0000000432   284-322   LDL receptor-like module  
  0.0000000942   363-403   LDL receptor-like module  
  0.000000262   599-631   LDL receptor-like module  
ENSAMEP00000004307   0.000000481   101-133   LDL receptor-like module  
ENSAMEP00000004840   0.00000000089   263-300   LDL receptor-like module  
  0.0000000419   228-260   LDL receptor-like module  
ENSAMEP00000004987   0.000000000055   847-889   LDL receptor-like module  
  0.0000000000969   3568-3608   LDL receptor-like module  
  0.00000000017   928-967   LDL receptor-like module  
  0.000000000275   26-65   LDL receptor-like module  
  0.00000000038   3368-3408   LDL receptor-like module  
  0.00000000038   3611-3647   LDL receptor-like module  
  0.000000000393   1012-1049   LDL receptor-like module  
  0.000000000406   2692-2729   LDL receptor-like module  
  0.000000000419   888-930   LDL receptor-like module  
  0.000000000563   973-1010   LDL receptor-like module  
  0.000000000615   3487-3526   LDL receptor-like module  
  0.000000000877   3530-3569   LDL receptor-like module  
  0.00000000196   2732-2766   LDL receptor-like module  
  0.00000000236   2559-2599   LDL receptor-like module  
  0.00000000353   2814-2849   LDL receptor-like module  
  0.00000000419   2851-2891   LDL receptor-like module  
  0.00000000471   3447-3485   LDL receptor-like module  
  0.00000000589   1056-1096   LDL receptor-like module  
  0.00000000877   2599-2638   LDL receptor-like module  
  0.0000000107   3410-3448   LDL receptor-like module  
  0.0000000122   2904-2939   LDL receptor-like module  
  0.0000000131   3330-3365   LDL receptor-like module  
  0.0000000196   2772-2806   LDL receptor-like module  
  0.0000000406   3736-3772   LDL receptor-like module  
  0.000000118   2523-2560   LDL receptor-like module  
  0.000000249   1142-1177   LDL receptor-like module  
  0.000000668   1105-1139   LDL receptor-like module  
  0.000000798   73-108   LDL receptor-like module  
  0.00000101   2657-2688   LDL receptor-like module  
  0.00000419   3652-3694   LDL receptor-like module  
  0.0000367   3691-3727   LDL receptor-like module  
ENSAMEP00000005136   0.0000000196   296-332   LDL receptor-like module  
ENSAMEP00000005171   0.0000000000249   54-90   LDL receptor-like module  
  0.000000000055   131-168   LDL receptor-like module  
ENSAMEP00000005610   0.0000311   120-152   LDL receptor-like module  
ENSAMEP00000005843   0.000000851   187-226   LDL receptor-like module  
ENSAMEP00000006028   0.000000000017   450-488   LDL receptor-like module  
  0.00000000055   164-200   LDL receptor-like module  
  0.00000013   411-449   LDL receptor-like module  
  0.000000236   212-254   LDL receptor-like module  
  0.000000733   374-411   LDL receptor-like module  
ENSAMEP00000006378   0.000000000327   136-175   LDL receptor-like module  
  0.00000000589   96-132   LDL receptor-like module  
  0.0000432   179-216   LDL receptor-like module  
ENSAMEP00000007401   0.000000103   134-166   LDL receptor-like module  
ENSAMEP00000007510   0.0000000000262   247-287   LDL receptor-like module  
  0.000000000144   211-249   LDL receptor-like module  
  0.000000000484   49-88   LDL receptor-like module  
  0.000000000524   126-166   LDL receptor-like module  
  0.000000000589   292-328   LDL receptor-like module  
  0.00000000511   87-125   LDL receptor-like module  
  0.00000000615   170-208   LDL receptor-like module  
  0.00000157   9-51   LDL receptor-like module  
ENSAMEP00000007681   0.0000000000301   399-436   LDL receptor-like module  
  0.0000000000903   140-177   LDL receptor-like module  
  0.0000707   329-354   LDL receptor-like module  
  0.00105   356-398   LDL receptor-like module  
ENSAMEP00000008236   0.0000000236   265-301   LDL receptor-like module  
  0.000707   431-459   LDL receptor-like module  
ENSAMEP00000008752   0.00000000017   165-202   LDL receptor-like module  
  0.00000000144   211-250   LDL receptor-like module  
  0.000000209   447-481   LDL receptor-like module  
  0.00000209   408-445   LDL receptor-like module  
  0.000445   383-407   LDL receptor-like module  
ENSAMEP00000008780   0.0000000000406   1374-1411   LDL receptor-like module  
  0.0000000000484   1153-1191   LDL receptor-like module  
  0.000000000111   1110-1151   LDL receptor-like module  
  0.000000000144   1281-1317   LDL receptor-like module  
  0.00000000183   1327-1361   LDL receptor-like module  
  0.00000000209   1034-1074   LDL receptor-like module  
  0.0000000157   1196-1229   LDL receptor-like module  
  0.0000000236   1428-1465   LDL receptor-like module  
  0.0000000458   1468-1507   LDL receptor-like module  
  0.000000209   1078-1111   LDL receptor-like module  
  0.00000288   1233-1268   LDL receptor-like module  
ENSAMEP00000008783   0.0000000000419   1380-1417   LDL receptor-like module  
  0.0000000000484   1159-1197   LDL receptor-like module  
  0.000000000111   1116-1157   LDL receptor-like module  
  0.000000000144   1287-1323   LDL receptor-like module  
  0.00000000183   1333-1367   LDL receptor-like module  
  0.00000000209   1040-1080   LDL receptor-like module  
  0.0000000157   1202-1235   LDL receptor-like module  
  0.0000000236   1434-1471   LDL receptor-like module  
  0.0000000458   1474-1513   LDL receptor-like module  
  0.000000209   1084-1117   LDL receptor-like module  
  0.00000288   1239-1274   LDL receptor-like module  
ENSAMEP00000009201   0.00000000929   41-80   LDL receptor-like module  
ENSAMEP00000010106   0.0000000000563   261-300   LDL receptor-like module  
  0.000000000262   54-97   LDL receptor-like module  
  0.000000000458   135-170   LDL receptor-like module  
  0.000000000654   13-50   LDL receptor-like module  
  0.00000000956   88-132   LDL receptor-like module  
  0.000000393   304-340   LDL receptor-like module  
ENSAMEP00000010216   0.000000209   56-94   LDL receptor-like module  
  0.0000327   145-186   LDL receptor-like module  
  0.0000759   107-136   LDL receptor-like module  
ENSAMEP00000011090   0.0000157   67-107   LDL receptor-like module  
  0.000301   30-65   LDL receptor-like module  
ENSAMEP00000011121   0.0000000183   128-168   LDL receptor-like module  
ENSAMEP00000011312   0.0000000000301   2706-2747   LDL receptor-like module  
  0.0000000000563   1237-1278   LDL receptor-like module  
  0.0000000000733   1119-1156   LDL receptor-like module  
  0.0000000000798   3687-3724   LDL receptor-like module  
  0.0000000000851   1078-1116   LDL receptor-like module  
  0.0000000000877   1038-1074   LDL receptor-like module  
  0.000000000131   3001-3040   LDL receptor-like module  
  0.000000000157   3762-3802   LDL receptor-like module  
  0.00000000017   2828-2867   LDL receptor-like module  
  0.000000000445   3556-3596   LDL receptor-like module  
  0.000000000484   2956-2998   LDL receptor-like module  
  0.000000000497   3597-3637   LDL receptor-like module  
  0.000000000785   2-37   LDL receptor-like module  
  0.000000000812   3722-3762   LDL receptor-like module  
  0.00000000106   994-1032   LDL receptor-like module  
  0.0000000012   76-117   LDL receptor-like module  
  0.00000000124   3481-3515   LDL receptor-like module  
  0.00000000144   3040-3080   LDL receptor-like module  
  0.00000000144   3517-3559   LDL receptor-like module  
  0.00000000144   156-193   LDL receptor-like module  
  0.00000000183   3895-3931   LDL receptor-like module  
  0.00000000223   190-230   LDL receptor-like module  
  0.0000000038   2669-2707   LDL receptor-like module  
  0.0000000072   2875-2911   LDL receptor-like module  
  0.00000000812   3809-3845   LDL receptor-like module  
  0.00000000942   1201-1236   LDL receptor-like module  
  0.000000012   40-75   LDL receptor-like module  
  0.0000000537   1157-1194   LDL receptor-like module  
  0.000000113   3851-3889   LDL receptor-like module  
  0.000000131   2915-2958   LDL receptor-like module  
  0.000000236   2792-2830   LDL receptor-like module  
  0.000000275   3650-3683   LDL receptor-like module  
  0.000000327   1282-1318   LDL receptor-like module  
  0.000000746   120-154   LDL receptor-like module  
  0.00000223   2751-2788   LDL receptor-like module  
ENSAMEP00000011413   0.0000000000209   155-195   LDL receptor-like module  
  0.000000000034   116-157   LDL receptor-like module  
  0.0000000000982   211-247   LDL receptor-like module  
  0.000000000157   37-75   LDL receptor-like module  
  0.000000000458   245-286   LDL receptor-like module  
  0.0000000641   80-117   LDL receptor-like module  
ENSAMEP00000011822   0.0000000000759   28-67   LDL receptor-like module  
ENSAMEP00000012829   0.00000000000157   250-290   LDL receptor-like module  
ENSAMEP00000012963   0.00000000000209   32-68   LDL receptor-like module  
  0.0000000000131   235-274   LDL receptor-like module  
  0.0000000000157   149-188   LDL receptor-like module  
  0.000000000122   272-312   LDL receptor-like module  
  0.000000000209   70-108   LDL receptor-like module  
  0.000000000367   187-225   LDL receptor-like module  
  0.000000017   107-149   LDL receptor-like module  
  0.0000000995   318-355   LDL receptor-like module  
ENSAMEP00000013154   0.0000000000406   3688-3728   LDL receptor-like module  
  0.000000000124   808-853   LDL receptor-like module  
  0.000000000223   772-809   LDL receptor-like module  
  0.000000000275   3562-3598   LDL receptor-like module  
  0.000000000288   851-891   LDL receptor-like module  
  0.000000000484   2821-2862   LDL receptor-like module  
  0.000000000641   3483-3518   LDL receptor-like module  
  0.000000000785   3283-3327   LDL receptor-like module  
  0.000000000785   2691-2726   LDL receptor-like module  
  0.000000000812   896-934   LDL receptor-like module  
  0.000000000982   935-971   LDL receptor-like module  
  0.00000000124   2476-2517   LDL receptor-like module  
  0.00000000126   3405-3441   LDL receptor-like module  
  0.00000000144   3604-3648   LDL receptor-like module  
  0.00000000196   3523-3560   LDL receptor-like module  
  0.00000000249   2733-2767   LDL receptor-like module  
  0.0000000034   983-1019   LDL receptor-like module  
  0.00000000576   3246-3281   LDL receptor-like module  
  0.00000000589   3440-3480   LDL receptor-like module  
  0.00000000628   2611-2647   LDL receptor-like module  
  0.00000000864   3366-3402   LDL receptor-like module  
  0.0000000105   2517-2556   LDL receptor-like module  
  0.0000000144   3325-3362   LDL receptor-like module  
  0.0000000249   2650-2692   LDL receptor-like module  
  0.0000000956   2769-2810   LDL receptor-like module  
  0.000000157   2570-2606   LDL receptor-like module  
  0.000000249   2441-2478   LDL receptor-like module  
  0.000000798   1065-1101   LDL receptor-like module  
  0.00000114   1029-1062   LDL receptor-like module  
  0.00000121   7-40   LDL receptor-like module  
  0.00000367   3650-3682   LDL receptor-like module  
ENSAMEP00000013165   0.00000000000798   256-301   LDL receptor-like module  
  0.0000000000123   299-339   LDL receptor-like module  
  0.0000000000288   221-260   LDL receptor-like module  
  0.0000000000563   391-428   LDL receptor-like module  
  0.000000000681   429-462   LDL receptor-like module  
ENSAMEP00000013167   0.0000000000785   1367-1404   LDL receptor-like module  
  0.000000000101   625-666   LDL receptor-like module  
  0.000000000183   1211-1247   LDL receptor-like module  
  0.000000000196   1289-1324   LDL receptor-like module  
  0.000000000223   1089-1133   LDL receptor-like module  
  0.000000000223   495-530   LDL receptor-like module  
  0.000000000511   1329-1366   LDL receptor-like module  
  0.000000000694   537-571   LDL receptor-like module  
  0.000000000929   1051-1086   LDL receptor-like module  
  0.0000000017   415-451   LDL receptor-like module  
  0.00000000183   285-322   LDL receptor-like module  
  0.00000000196   1246-1286   LDL receptor-like module  
  0.00000000236   1172-1208   LDL receptor-like module  
  0.00000000419   1131-1168   LDL receptor-like module  
  0.00000000563   454-491   LDL receptor-like module  
  0.00000000668   324-361   LDL receptor-like module  
  0.0000000262   573-614   LDL receptor-like module  
  0.0000000432   374-410   LDL receptor-like module  
  0.000000114   244-281   LDL receptor-like module  
ENSAMEP00000013671   0.000000471   6-37   LDL receptor-like module  
ENSAMEP00000013962   0.0000000103   226-263   LDL receptor-like module  
  0.0000746   457-495   LDL receptor-like module  
  0.0196   25-52   LDL receptor-like module  
ENSAMEP00000013985   0.0000000942   63-101   LDL receptor-like module  
ENSAMEP00000014286   0.0000000288   291-327   LDL receptor-like module  
ENSAMEP00000014553   0.0000000000157   17-53   LDL receptor-like module  
  0.000000000484   98-135   LDL receptor-like module  
  0.000000000825   58-95   LDL receptor-like module  
ENSAMEP00000015174   0.000000157   166-197   LDL receptor-like module  
ENSAMEP00000015316   0.000000000916   282-319   LDL receptor-like module  
  0.0000000012   367-410   LDL receptor-like module  
  0.00000000275   324-360   LDL receptor-like module  
  0.0000000563   195-234   LDL receptor-like module  
ENSAMEP00000016133   0.0000000055   141-173   LDL receptor-like module  
ENSAMEP00000016257   0.0000417   78-119   LDL receptor-like module  
ENSAMEP00000017829   0.0000000103   332-369   LDL receptor-like module  
ENSAMEP00000018064   0.000000209   102-134   LDL receptor-like module  
ENSAMEP00000018731   0.0000000759   14-48   LDL receptor-like module  
ENSAMEP00000019176   0.0000000000131   467-505   LDL receptor-like module  
  0.000000055   544-583   LDL receptor-like module  
  0.0000393   503-539   LDL receptor-like module  
ENSAMEP00000021199   0.0000000000196   3-36   LDL receptor-like module  
 
Weak hits:
ENSAMEP00000003973   0.00017   170-194   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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