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  Home > Genomes > Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
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Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)

Assignment details

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Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) has 272 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|112419067|gb|AAI21923|   0.0000000353   295-331   LDL receptor-like module  
gi|113931254|ref|NP_001039074|   0.00000089   390-428   LDL receptor-like module  
gi|118404626|ref|NP_001072912|   0.0000000353   295-331   LDL receptor-like module  
gi|134023951|gb|AAI35754|   0.0000000000798   106-144   LDL receptor-like module  
  0.00000000011   25-61   LDL receptor-like module  
  0.00000000017   65-104   LDL receptor-like module  
gi|156717580|ref|NP_001096330|   0.0000000000798   106-144   LDL receptor-like module  
  0.00000000011   25-61   LDL receptor-like module  
  0.00000000017   65-104   LDL receptor-like module  
gi|158513832|gb|A4IHY6|   0.0000000000798   106-144   LDL receptor-like module  
  0.00000000011   25-61   LDL receptor-like module  
  0.00000000017   65-104   LDL receptor-like module  
gi|166796971|gb|AAI59018|   0.000000412   106-136   LDL receptor-like module  
gi|166796994|gb|AAI59080|   0.000000412   106-136   LDL receptor-like module  
gi|301603656|gb|XP_002931503|   0.0000000000301   238-276   LDL receptor-like module  
  0.0000000000393   152-189   LDL receptor-like module  
  0.0000000000746   187-227   LDL receptor-like module  
  0.000000000458   30-67   LDL receptor-like module  
  0.000000000484   274-315   LDL receptor-like module  
  0.000000000746   66-107   LDL receptor-like module  
  0.00000000733   112-150   LDL receptor-like module  
  0.000000055   320-355   LDL receptor-like module  
gi|301603869|gb|XP_002931586|   0.000000000017   445-483   LDL receptor-like module  
  0.000000000183   161-197   LDL receptor-like module  
  0.000000101   406-444   LDL receptor-like module  
  0.000000196   207-249   LDL receptor-like module  
  0.000000654   369-406   LDL receptor-like module  
gi|301603975|gb|XP_002931633|   0.000000772   101-137   LDL receptor-like module  
gi|301607053|gb|XP_002933130|   0.0000000000249   665-706   LDL receptor-like module  
  0.0000000119   156-195   LDL receptor-like module  
gi|301607196|gb|XP_002933197|   0.000000000367   918-959   LDL receptor-like module  
  0.00000000157   705-746   LDL receptor-like module  
  0.00000000733   1591-1629   LDL receptor-like module  
  0.0000000785   1344-1379   LDL receptor-like module  
  0.000000107   1140-1177   LDL receptor-like module  
  0.000000419   480-518   LDL receptor-like module  
  0.00000458   1551-1588   LDL receptor-like module  
  0.00131   1638-1671   LDL receptor-like module  
gi|301607830|gb|XP_002933508|   0.000000000929   611-650   LDL receptor-like module  
  0.00000000111   295-333   LDL receptor-like module  
  0.00000000131   333-371   LDL receptor-like module  
  0.00000000262   375-412   LDL receptor-like module  
  0.00000000275   536-573   LDL receptor-like module  
  0.0000128   577-609   LDL receptor-like module  
gi|301608382|gb|XP_002933782|   0.00000785   147-181   LDL receptor-like module  
gi|301609009|gb|XP_002934071|   0.000000131   21-58   LDL receptor-like module  
gi|301609344|gb|XP_002934223|   0.00000000000641   26-66   LDL receptor-like module  
  0.00000000000759   146-187   LDL receptor-like module  
  0.0000000000144   233-271   LDL receptor-like module  
  0.0000000000916   270-310   LDL receptor-like module  
  0.000000000209   185-223   LDL receptor-like module  
  0.000000000262   68-107   LDL receptor-like module  
  0.00000000262   105-147   LDL receptor-like module  
  0.0000000301   315-353   LDL receptor-like module  
gi|301609429|gb|XP_002934284|   0.00000111   519-558   LDL receptor-like module  
  0.000017   480-514   LDL receptor-like module  
  0.000055   448-480   LDL receptor-like module  
gi|301610498|gb|XP_002934794|   0.00000123   44-81   LDL receptor-like module  
gi|301611053|gb|XP_002935066|   0.0000000000236   387-427   LDL receptor-like module  
  0.00000000249   230-266   LDL receptor-like module  
gi|301612677|gb|XP_002935840|   0.0000000000144   436-474   LDL receptor-like module  
  0.0000000000406   156-193   LDL receptor-like module  
  0.00000017   201-242   LDL receptor-like module  
  0.000000746   397-434   LDL receptor-like module  
  0.00000144   359-396   LDL receptor-like module  
gi|301613244|gb|XP_002936119|   0.0000000877   14-48   LDL receptor-like module  
gi|301614097|gb|XP_002936534|   0.00000445   315-346   LDL receptor-like module  
  0.0000236   137-172   LDL receptor-like module  
  0.0000327   177-216   LDL receptor-like module  
  0.0000419   272-302   LDL receptor-like module  
  0.0000759   229-260   LDL receptor-like module  
  0.0000772   89-129   LDL receptor-like module  
gi|301614101|gb|XP_002936535|   0.00000034   782-814   LDL receptor-like module  
  0.00000209   315-347   LDL receptor-like module  
  0.00000563   109-140   LDL receptor-like module  
  0.00000589   746-776   LDL receptor-like module  
  0.0000183   232-262   LDL receptor-like module  
  0.0000367   190-220   LDL receptor-like module  
  0.0000419   146-176   LDL receptor-like module  
  0.0000641   274-305   LDL receptor-like module  
gi|301614103|gb|XP_002936536|   0.000000589   220-259   LDL receptor-like module  
  0.00000144   53-90   LDL receptor-like module  
  0.00000288   93-130   LDL receptor-like module  
  0.00000327   175-211   LDL receptor-like module  
  0.0000038   133-170   LDL receptor-like module  
  0.00000641   307-341   LDL receptor-like module  
  0.0000288   266-303   LDL receptor-like module  
  0.000144   23-54   LDL receptor-like module  
gi|301614657|gb|XP_002936802|   0.0000000000034   2760-2802   LDL receptor-like module  
  0.00000000000393   58-93   LDL receptor-like module  
  0.0000000000236   1291-1332   LDL receptor-like module  
  0.0000000000353   1132-1169   LDL receptor-like module  
  0.000000000038   1091-1128   LDL receptor-like module  
  0.0000000000589   3653-3693   LDL receptor-like module  
  0.0000000000825   131-172   LDL receptor-like module  
  0.000000000089   1172-1210   LDL receptor-like module  
  0.0000000000903   2883-2923   LDL receptor-like module  
  0.0000000000969   3052-3094   LDL receptor-like module  
  0.00000000012   3012-3054   LDL receptor-like module  
  0.000000000236   2927-2965   LDL receptor-like module  
  0.000000000353   3823-3861   LDL receptor-like module  
  0.000000000406   92-132   LDL receptor-like module  
  0.000000000707   1048-1086   LDL receptor-like module  
  0.000000000838   245-285   LDL receptor-like module  
  0.00000000113   3866-3900   LDL receptor-like module  
  0.00000000144   3572-3615   LDL receptor-like module  
  0.00000000157   1255-1291   LDL receptor-like module  
  0.00000000157   3536-3571   LDL receptor-like module  
  0.00000000236   3747-3780   LDL receptor-like module  
  0.00000000275   2725-2769   LDL receptor-like module  
  0.00000000314   3611-3654   LDL receptor-like module  
  0.00000000353   3951-3988   LDL receptor-like module  
  0.00000000458   210-247   LDL receptor-like module  
  0.00000000759   3779-3819   LDL receptor-like module  
  0.0000000144   2839-2885   LDL receptor-like module  
  0.0000000144   1212-1250   LDL receptor-like module  
  0.0000000759   3100-3140   LDL receptor-like module  
  0.0000000785   2969-3012   LDL receptor-like module  
  0.0000000982   3908-3946   LDL receptor-like module  
  0.00000011   1336-1372   LDL receptor-like module  
  0.00000017   176-209   LDL receptor-like module  
  0.00000223   2808-2844   LDL receptor-like module  
  0.00000903   3707-3740   LDL receptor-like module  
gi|301615896|gb|XP_002937402|   0.0000000000942   912-957   LDL receptor-like module  
  0.00000000017   1040-1075   LDL receptor-like module  
  0.000000000209   956-995   LDL receptor-like module  
  0.000000000262   2639-2675   LDL receptor-like module  
  0.000000000563   2849-2890   LDL receptor-like module  
  0.000000000812   2718-2754   LDL receptor-like module  
  0.000000000838   1087-1123   LDL receptor-like module  
  0.0000000011   877-911   LDL receptor-like module  
  0.00000000196   2761-2795   LDL receptor-like module  
  0.0000000038   1001-1038   LDL receptor-like module  
  0.00000000524   2545-2584   LDL receptor-like module  
  0.0000000127   2678-2720   LDL receptor-like module  
  0.0000000209   2504-2545   LDL receptor-like module  
  0.0000000353   66-105   LDL receptor-like module  
  0.0000000615   2598-2634   LDL receptor-like module  
  0.0000000759   2798-2838   LDL receptor-like module  
  0.000000249   2469-2506   LDL receptor-like module  
  0.000000367   1169-1205   LDL receptor-like module  
  0.000000432   1134-1166   LDL receptor-like module  
  0.000000694   110-145   LDL receptor-like module  
gi|301618385|gb|XP_002938609|   0.00000000000445   432-470   LDL receptor-like module  
  0.0000000000196   506-549   LDL receptor-like module  
  0.00000000484   596-633   LDL receptor-like module  
  0.0000000115   475-505   LDL receptor-like module  
  0.000000275   548-587   LDL receptor-like module  
gi|301619095|gb|XP_002938937|   0.000000402   101-131   LDL receptor-like module  
gi|301620455|gb|XP_002939591|   0.0000000183   318-355   LDL receptor-like module  
gi|301620806|gb|XP_002939758|   0.0000000000733   927-967   LDL receptor-like module  
  0.0000000000825   3676-3713   LDL receptor-like module  
  0.000000000111   106-146   LDL receptor-like module  
  0.000000000118   3634-3674   LDL receptor-like module  
  0.000000000223   3718-3762   LDL receptor-like module  
  0.000000000301   1009-1048   LDL receptor-like module  
  0.000000000301   2768-2804   LDL receptor-like module  
  0.000000000393   3434-3474   LDL receptor-like module  
  0.000000000419   1092-1129   LDL receptor-like module  
  0.000000000694   968-1010   LDL receptor-like module  
  0.00000000131   3596-3635   LDL receptor-like module  
  0.0000000017   1136-1176   LDL receptor-like module  
  0.00000000288   1053-1090   LDL receptor-like module  
  0.00000000314   2889-2925   LDL receptor-like module  
  0.00000000393   3553-3592   LDL receptor-like module  
  0.0000000055   2847-2881   LDL receptor-like module  
  0.00000000654   3516-3552   LDL receptor-like module  
  0.0000000117   2807-2840   LDL receptor-like module  
  0.0000000183   3476-3514   LDL receptor-like module  
  0.0000000209   3397-3432   LDL receptor-like module  
  0.0000000262   2633-2674   LDL receptor-like module  
  0.0000000262   2927-2966   LDL receptor-like module  
  0.0000000563   2674-2713   LDL receptor-like module  
  0.000000209   154-189   LDL receptor-like module  
  0.000000353   1222-1258   LDL receptor-like module  
  0.000000746   3759-3796   LDL receptor-like module  
  0.000000798   2597-2635   LDL receptor-like module  
  0.00000109   1187-1219   LDL receptor-like module  
  0.00000144   2732-2763   LDL receptor-like module  
gi|301621490|gb|XP_002940084|   0.000000157   185-225   LDL receptor-like module  
gi|301621662|gb|XP_002940163|   0.0000021   80-121   LDL receptor-like module  
gi|301621664|gb|XP_002940164|   0.00000000223   141-174   LDL receptor-like module  
gi|301622373|gb|XP_002940514|   0.000000017   92-132   LDL receptor-like module  
gi|301622397|gb|XP_002940520|   0.0000000249   290-326   LDL receptor-like module  
gi|301624012|gb|XP_002941305|   0.00000000563   316-353   LDL receptor-like module  
gi|301624534|gb|XP_002941562|   0.000000000249   230-268   LDL receptor-like module  
  0.00000838   192-228   LDL receptor-like module  
  0.0000458   4-27   LDL receptor-like module  
  0.000209   165-190   LDL receptor-like module  
gi|301624793|gb|XP_002941683|   0.00000000000223   1412-1449   LDL receptor-like module  
  0.0000000000157   1313-1350   LDL receptor-like module  
  0.0000000000798   1143-1184   LDL receptor-like module  
  0.000000000262   1187-1225   LDL receptor-like module  
  0.000000000772   1357-1394   LDL receptor-like module  
  0.000000000825   1066-1104   LDL receptor-like module  
  0.000000013   1229-1262   LDL receptor-like module  
  0.000000183   1464-1504   LDL receptor-like module  
  0.000000236   1107-1145   LDL receptor-like module  
  0.00000249   1265-1302   LDL receptor-like module  
  0.00000733   1509-1544   LDL receptor-like module  
gi|301624799|gb|XP_002941689|   0.00000000196   1325-1360   LDL receptor-like module  
  0.00000000327   1246-1286   LDL receptor-like module  
  0.00000000327   1287-1323   LDL receptor-like module  
gi|301625410|gb|XP_002941898|   0.0000000000288   194-234   LDL receptor-like module  
  0.000000000124   240-275   LDL receptor-like module  
  0.000000000144   158-196   LDL receptor-like module  
  0.000000000471   41-79   LDL receptor-like module  
  0.00000000107   120-158   LDL receptor-like module  
  0.00000000524   77-115   LDL receptor-like module  
  0.0000105   4-40   LDL receptor-like module  
gi|301626898|gb|XP_002942623|   0.000000000445   1422-1460   LDL receptor-like module  
  0.000000000668   1639-1676   LDL receptor-like module  
  0.00000000131   1579-1618   LDL receptor-like module  
  0.00000000223   3155-3194   LDL receptor-like module  
  0.00000000668   2351-2391   LDL receptor-like module  
  0.0000000127   1503-1540   LDL receptor-like module  
  0.0000000131   3217-3253   LDL receptor-like module  
  0.0000000183   2401-2439   LDL receptor-like module  
  0.0000000209   1458-1500   LDL receptor-like module  
  0.0000000301   1725-1759   LDL receptor-like module  
  0.0000000367   1539-1574   LDL receptor-like module  
  0.000000209   1386-1420   LDL receptor-like module  
  0.000000353   2727-2765   LDL receptor-like module  
  0.00000131   1678-1714   LDL receptor-like module  
  0.000275   1773-1802   LDL receptor-like module  
gi|301627002|gb|XP_002942671|   0.0000000000157   265-302   LDL receptor-like module  
  0.000000000223   224-261   LDL receptor-like module  
  0.00000000301   125-163   LDL receptor-like module  
  0.00000000458   309-351   LDL receptor-like module  
gi|301627004|gb|XP_002942668|   0.0000038   203-238   LDL receptor-like module  
gi|301627062|gb|XP_002942697|   0.000000000995   1287-1325   LDL receptor-like module  
  0.00000000484   1209-1247   LDL receptor-like module  
  0.00000000694   1249-1284   LDL receptor-like module  
gi|301627452|gb|XP_002942891|   0.000000000055   144-185   LDL receptor-like module  
  0.0000000000576   27-65   LDL receptor-like module  
  0.0000000000877   195-232   LDL receptor-like module  
  0.00000000038   64-107   LDL receptor-like module  
  0.00000000102   234-271   LDL receptor-like module  
  0.00000000327   109-146   LDL receptor-like module  
  0.000000131   275-310   LDL receptor-like module  
gi|301627689|gb|XP_002943002|   0.000000419   135-172   LDL receptor-like module  
gi|301627695|gb|XP_002943005|   0.00000000000262   271-316   LDL receptor-like module  
  0.0000000000353   30-70   LDL receptor-like module  
  0.00000000011   149-189   LDL receptor-like module  
  0.000000000223   192-227   LDL receptor-like module  
  0.000000000772   231-269   LDL receptor-like module  
  0.000000000956   114-150   LDL receptor-like module  
  0.00000000183   356-393   LDL receptor-like module  
  0.00000000196   73-110   LDL receptor-like module  
  0.0000000654   1-28   LDL receptor-like module  
  0.00000288   317-350   LDL receptor-like module  
gi|49522799|gb|AAH74554|   0.00000013   87-128   LDL receptor-like module  
gi|49900216|gb|AAH76994|   0.000000000471   435-476   LDL receptor-like module  
  0.00000000196   511-548   LDL receptor-like module  
  0.0000000038   474-513   LDL receptor-like module  
  0.000000209   551-590   LDL receptor-like module  
gi|50370300|gb|AAH76972|   0.00000000497   140-173   LDL receptor-like module  
gi|52346064|ref|NP_001005075|   0.000000000471   435-476   LDL receptor-like module  
  0.00000000196   511-548   LDL receptor-like module  
  0.0000000038   474-513   LDL receptor-like module  
  0.000000209   551-590   LDL receptor-like module  
gi|53749700|ref|NP_001005445|   0.00000013   87-128   LDL receptor-like module  
gi|55741966|ref|NP_001006864|   0.00000000497   140-173   LDL receptor-like module  
gi|56789647|gb|AAH88556|   0.000000402   103-133   LDL receptor-like module  
gi|62857413|ref|NP_001016840|   0.00000000000484   25-67   LDL receptor-like module  
gi|66990056|gb|AAH98090|   0.000000017   218-256   LDL receptor-like module  
  0.000000746   262-293   LDL receptor-like module  
gi|73853846|ref|NP_001027508|   0.000000017   218-256   LDL receptor-like module  
  0.000000746   262-293   LDL receptor-like module  
gi|89268696|gb|CAJ82714|   0.00000000000236   137-178   LDL receptor-like module  
  0.00000000000733   203-246   LDL receptor-like module  
  0.000000000017   99-138   LDL receptor-like module  
  0.0000000223   251-289   LDL receptor-like module  
  0.0000000432   176-209   LDL receptor-like module  
gi|89273413|gb|CAJ82632|   0.00000000000484   25-67   LDL receptor-like module  
gi|89273918|gb|CAJ81839|   0.00000089   390-428   LDL receptor-like module  
 
Weak hits:
gi|159155377|gb|AAI54891|   0.000458   71-110   LDL receptor-like module  
  0.000576   38-69   LDL receptor-like module  
gi|301621677|gb|XP_002940173|   0.00825   131-149   LDL receptor-like module  
gi|301627687|gb|XP_002943001|   0.000812   63-97   LDL receptor-like module  
gi|39850058|gb|AAH64160|   0.000458   71-110   LDL receptor-like module  
  0.000576   38-69   LDL receptor-like module  
gi|45361559|ref|NP_989356|   0.000458   71-110   LDL receptor-like module  
  0.000576   38-69   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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