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  Home > Genomes > Monodelphis domestica 69_5 > LDL receptor-like module domains


LDL receptor-like module superfamily domain assignments
in
Monodelphis domestica 69_5

Assignment details

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Monodelphis domestica 69_5 has 212 significant domains in 48 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000000251   0.00000000969   396-434   LDL receptor-like module  
ENSMODP00000000529   0.0000000000131   161-198   LDL receptor-like module  
  0.0000000000445   76-112   LDL receptor-like module  
  0.0000000000563   197-238   LDL receptor-like module  
  0.000000000196   4-42   LDL receptor-like module  
  0.000000000602   110-150   LDL receptor-like module  
  0.0000000524   243-275   LDL receptor-like module  
ENSMODP00000000834   0.0000011   491-524   LDL receptor-like module  
  0.0000301   458-491   LDL receptor-like module  
  0.000446   529-567   LDL receptor-like module  
ENSMODP00000002159   0.0000785   12-44   LDL receptor-like module  
  0.0232   48-85   LDL receptor-like module  
ENSMODP00000002406   0.0000000982   26-63   LDL receptor-like module  
ENSMODP00000003423   0.0000000000157   2231-2270   LDL receptor-like module  
  0.000000000759   1417-1458   LDL receptor-like module  
  0.00000000157   2449-2487   LDL receptor-like module  
  0.000000012   1569-1606   LDL receptor-like module  
  0.0000000157   1458-1493   LDL receptor-like module  
  0.000000038   1380-1417   LDL receptor-like module  
  0.0000000537   2391-2430   LDL receptor-like module  
  0.0000000812   1496-1534   LDL receptor-like module  
  0.000000249   1609-1643   LDL receptor-like module  
  0.000209   1662-1687   LDL receptor-like module  
ENSMODP00000003507   0.000000000103   3688-3730   LDL receptor-like module  
  0.000000000117   808-853   LDL receptor-like module  
  0.000000000288   3525-3562   LDL receptor-like module  
  0.000000000406   851-890   LDL receptor-like module  
  0.000000000524   3564-3600   LDL receptor-like module  
  0.000000000576   2823-2864   LDL receptor-like module  
  0.000000000668   2692-2728   LDL receptor-like module  
  0.000000000707   937-973   LDL receptor-like module  
  0.000000000707   3285-3329   LDL receptor-like module  
  0.00000000101   3407-3443   LDL receptor-like module  
  0.00000000196   773-812   LDL receptor-like module  
  0.00000000275   2735-2769   LDL receptor-like module  
  0.00000000275   3486-3520   LDL receptor-like module  
  0.00000000393   3606-3650   LDL receptor-like module  
  0.00000000458   2478-2519   LDL receptor-like module  
  0.00000000563   3442-3482   LDL receptor-like module  
  0.00000000576   3248-3283   LDL receptor-like module  
  0.00000000746   2613-2649   LDL receptor-like module  
  0.0000000089   3368-3404   LDL receptor-like module  
  0.0000000106   985-1021   LDL receptor-like module  
  0.0000000109   2519-2558   LDL receptor-like module  
  0.0000000131   3327-3364   LDL receptor-like module  
  0.0000000157   2652-2689   LDL receptor-like module  
  0.0000000537   2772-2812   LDL receptor-like module  
  0.0000000733   2572-2608   LDL receptor-like module  
  0.000000275   896-936   LDL receptor-like module  
  0.000000367   2443-2480   LDL receptor-like module  
  0.000000589   1032-1064   LDL receptor-like module  
  0.000000628   7-40   LDL receptor-like module  
  0.000000628   1067-1103   LDL receptor-like module  
  0.00000484   3652-3684   LDL receptor-like module  
ENSMODP00000003532   0.0000000000262   2-36   LDL receptor-like module  
ENSMODP00000004183   0.00000016   119-159   LDL receptor-like module  
ENSMODP00000004432   0.00000000000301   233-272   LDL receptor-like module  
  0.00000000000746   30-67   LDL receptor-like module  
  0.0000000000114   147-187   LDL receptor-like module  
  0.00000000017   271-311   LDL receptor-like module  
  0.000000000471   69-107   LDL receptor-like module  
  0.00000000107   186-224   LDL receptor-like module  
  0.00000000785   106-148   LDL receptor-like module  
  0.0000000511   317-351   LDL receptor-like module  
ENSMODP00000006233   0.000000000576   525-561   LDL receptor-like module  
  0.00000000144   490-525   LDL receptor-like module  
  0.0000000017   453-488   LDL receptor-like module  
  0.00000182   563-604   LDL receptor-like module  
ENSMODP00000006446   0.0000000000288   399-436   LDL receptor-like module  
  0.0000000000537   143-183   LDL receptor-like module  
  0.000131   330-354   LDL receptor-like module  
  0.00864   357-398   LDL receptor-like module  
ENSMODP00000006681   0.000000000017   450-488   LDL receptor-like module  
  0.00000000196   164-200   LDL receptor-like module  
  0.000000128   411-449   LDL receptor-like module  
  0.000000236   212-254   LDL receptor-like module  
  0.000000733   374-411   LDL receptor-like module  
ENSMODP00000007833   0.0000000000511   243-281   LDL receptor-like module  
  0.0000000000746   197-235   LDL receptor-like module  
  0.0000000000903   76-113   LDL receptor-like module  
  0.000000000262   153-193   LDL receptor-like module  
  0.000000000301   112-155   LDL receptor-like module  
  0.00000000249   283-321   LDL receptor-like module  
ENSMODP00000008236   0.0000898   68-108   LDL receptor-like module  
  0.000236   31-66   LDL receptor-like module  
ENSMODP00000009960   0.00000000000668   2722-2763   LDL receptor-like module  
  0.0000000000327   1253-1294   LDL receptor-like module  
  0.0000000000432   2844-2884   LDL receptor-like module  
  0.0000000000759   24-62   LDL receptor-like module  
  0.0000000000851   1051-1090   LDL receptor-like module  
  0.000000000106   2972-3015   LDL receptor-like module  
  0.000000000117   3614-3653   LDL receptor-like module  
  0.000000000131   2889-2926   LDL receptor-like module  
  0.000000000183   1010-1048   LDL receptor-like module  
  0.000000000209   101-142   LDL receptor-like module  
  0.000000000393   3013-3055   LDL receptor-like module  
  0.000000000628   3705-3742   LDL receptor-like module  
  0.000000000694   1095-1132   LDL receptor-like module  
  0.000000000798   3784-3822   LDL receptor-like module  
  0.00000000089   3497-3533   LDL receptor-like module  
  0.00000000102   3533-3576   LDL receptor-like module  
  0.00000000103   3056-3096   LDL receptor-like module  
  0.00000000105   3740-3780   LDL receptor-like module  
  0.00000000128   1214-1252   LDL receptor-like module  
  0.00000000131   1135-1172   LDL receptor-like module  
  0.00000000327   3573-3615   LDL receptor-like module  
  0.0000000034   3913-3949   LDL receptor-like module  
  0.00000000393   2685-2723   LDL receptor-like module  
  0.0000000123   3827-3863   LDL receptor-like module  
  0.000000017   1173-1211   LDL receptor-like module  
  0.0000000249   2800-2846   LDL receptor-like module  
  0.0000000249   65-100   LDL receptor-like module  
  0.000000128   2928-2972   LDL receptor-like module  
  0.000000275   3870-3907   LDL receptor-like module  
  0.00000038   146-179   LDL receptor-like module  
  0.000000602   1298-1334   LDL receptor-like module  
  0.000000982   3668-3701   LDL receptor-like module  
  0.00000223   181-217   LDL receptor-like module  
  0.00000419   2766-2805   LDL receptor-like module  
  0.00072   217-253   LDL receptor-like module  
ENSMODP00000011723   0.0000000157   27-64   LDL receptor-like module  
ENSMODP00000011798   0.00000000301   1219-1257   LDL receptor-like module  
  0.0000000038   1002-1044   LDL receptor-like module  
  0.0000000122   1902-1940   LDL receptor-like module  
  0.0000000223   343-381   LDL receptor-like module  
  0.000000103   1859-1898   LDL receptor-like module  
  0.000000114   1643-1679   LDL receptor-like module  
  0.000000209   571-608   LDL receptor-like module  
  0.000000288   1438-1475   LDL receptor-like module  
  0.0000017   782-817   LDL receptor-like module  
  0.000419   1944-1981   LDL receptor-like module  
ENSMODP00000015285   0.0000000000419   264-300   LDL receptor-like module  
  0.00000000017   544-581   LDL receptor-like module  
  0.00000000123   308-349   LDL receptor-like module  
  0.00000314   505-542   LDL receptor-like module  
  0.00000393   463-503   LDL receptor-like module  
ENSMODP00000015541   0.0000000262   145-181   LDL receptor-like module  
ENSMODP00000015860   0.000000000262   26-65   LDL receptor-like module  
ENSMODP00000016097   0.0000000123   296-332   LDL receptor-like module  
ENSMODP00000016287   0.00000000000157   1422-1461   LDL receptor-like module  
  0.0000000000445   1159-1200   LDL receptor-like module  
  0.0000000000537   1202-1240   LDL receptor-like module  
  0.0000000000877   1330-1366   LDL receptor-like module  
  0.00000000131   1082-1120   LDL receptor-like module  
  0.00000000196   1375-1410   LDL receptor-like module  
  0.0000000038   1245-1278   LDL receptor-like module  
  0.0000000131   1477-1514   LDL receptor-like module  
  0.0000000314   1517-1556   LDL receptor-like module  
  0.000000144   1123-1161   LDL receptor-like module  
  0.00000275   1281-1317   LDL receptor-like module  
ENSMODP00000016964   0.00000432   33-69   LDL receptor-like module  
ENSMODP00000019385   0.00000969   20-51   LDL receptor-like module  
ENSMODP00000020041   0.000000000471   325-362   LDL receptor-like module  
  0.000000000694   282-319   LDL receptor-like module  
  0.00000000275   368-411   LDL receptor-like module  
  0.0000000681   196-235   LDL receptor-like module  
ENSMODP00000020958   0.00000000628   310-347   LDL receptor-like module  
ENSMODP00000021636   0.00000209   197-235   LDL receptor-like module  
  0.00000615   433-469   LDL receptor-like module  
ENSMODP00000022562   0.000000000117   469-506   LDL receptor-like module  
  0.00000284   545-584   LDL receptor-like module  
  0.000183   505-541   LDL receptor-like module  
ENSMODP00000022743   0.000000000838   1325-1363   LDL receptor-like module  
  0.00000000131   1246-1286   LDL receptor-like module  
  0.00000000393   1287-1323   LDL receptor-like module  
ENSMODP00000023728   0.0000000000746   2102-2142   LDL receptor-like module  
  0.000000000144   2144-2180   LDL receptor-like module  
  0.000000000183   2186-2231   LDL receptor-like module  
  0.000000000209   2020-2060   LDL receptor-like module  
  0.000000000223   1227-1264   LDL receptor-like module  
  0.000000000249   1902-1942   LDL receptor-like module  
  0.000000000314   1094-1134   LDL receptor-like module  
  0.000000000497   2064-2103   LDL receptor-like module  
  0.000000000838   1349-1383   LDL receptor-like module  
  0.0000000017   1981-2018   LDL receptor-like module  
  0.00000000223   1267-1302   LDL receptor-like module  
  0.00000000615   1134-1173   LDL receptor-like module  
  0.00000000681   1944-1982   LDL receptor-like module  
  0.00000000772   1386-1426   LDL receptor-like module  
  0.0000000144   1865-1900   LDL receptor-like module  
  0.000000017   2277-2310   LDL receptor-like module  
  0.0000000196   1307-1341   LDL receptor-like module  
  0.0000000275   1058-1095   LDL receptor-like module  
  0.000000694   1191-1223   LDL receptor-like module  
  0.000017   2228-2264   LDL receptor-like module  
ENSMODP00000024751   0.000000000109   117-154   LDL receptor-like module  
  0.00000000106   77-114   LDL receptor-like module  
  0.0000000111   45-72   LDL receptor-like module  
ENSMODP00000024825   0.0000000000288   272-312   LDL receptor-like module  
  0.00000000017   236-274   LDL receptor-like module  
  0.000000000183   317-353   LDL receptor-like module  
  0.000000000236   151-191   LDL receptor-like module  
  0.000000000353   74-113   LDL receptor-like module  
  0.00000000445   195-233   LDL receptor-like module  
  0.00000000458   112-150   LDL receptor-like module  
  0.00000157   34-76   LDL receptor-like module  
ENSMODP00000025382   0.0000000681   141-173   LDL receptor-like module  
ENSMODP00000025394   0.0000000929   83-122   LDL receptor-like module  
ENSMODP00000025406   0.000028   105-138   LDL receptor-like module  
ENSMODP00000025791   0.000000000916   649-686   LDL receptor-like module  
  0.00000000445   373-411   LDL receptor-like module  
  0.0000000072   411-449   LDL receptor-like module  
  0.00000000812   452-493   LDL receptor-like module  
  0.0000000209   338-375   LDL receptor-like module  
  0.0000000236   723-762   LDL receptor-like module  
  0.00000196   689-721   LDL receptor-like module  
ENSMODP00000026218   0.0000000668   106-146   LDL receptor-like module  
ENSMODP00000026288   0.00000000785   93-132   LDL receptor-like module  
ENSMODP00000026754   0.0000000654   14-48   LDL receptor-like module  
ENSMODP00000027497   0.000000000314   581-620   LDL receptor-like module  
  0.000000000851   541-579   LDL receptor-like module  
ENSMODP00000030146   0.0000000000681   38-77   LDL receptor-like module  
ENSMODP00000032224   0.000000252   144-183   LDL receptor-like module  
ENSMODP00000032356   0.000000144   175-207   LDL receptor-like module  
ENSMODP00000034265   0.000000000109   117-154   LDL receptor-like module  
  0.000000000798   77-114   LDL receptor-like module  
  0.00000000668   34-71   LDL receptor-like module  
ENSMODP00000036977   0.00000000183   258-293   LDL receptor-like module  
  0.000000157   223-255   LDL receptor-like module  
ENSMODP00000037028   0.00000000798   108-150   LDL receptor-like module  
ENSMODP00000040834   0.0000000812   255-290   LDL receptor-like module  
 
Weak hits:
ENSMODP00000016975   0.000131   144-168   LDL receptor-like module  
ENSMODP00000038778   0.000327   197-238   LDL receptor-like module  

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Select to display   Genome       Domains   Proteins
No Yes ALL   327216 327216
No Yes Homo sapiens 76_38 Human 548 151
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 216 47
No Yes Gorilla gorilla 76_3.1 Western gorilla 276 65
No Yes Pongo abelii 76_2 Sumatran orangutan 204 46
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 205 51
No Yes Papio anubis 76 Olive baboon 223 47
No Yes Macaca mulatta 76_1 Rhesus monkey 283 70
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 461 115
No Yes Otolemur garnettii 76_3 Small-eared galago 203 44
No Yes Microcebus murinus 76_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 76_5.0 Norway rat 208 49
No Yes Mus musculus 76_38 House mouse 402 97
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 224 46
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 238 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 223 51
No Yes Oryctolagus cuniculus 76_2 Rabbit 225 50
No Yes Ochotona princeps 76 American pika 188 39
No Yes Tupaia belangeri 76 Northern tree shrew 156 37
No Yes Sus scrofa 76_10.2 Pig 167 58
No Yes Bos taurus 76_3.1 Cattle 211 52
No Yes Ovis aries 76_3.1 Sheep 271 58
No Yes Vicugna pacos 76_1 Alpaca 117 23
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 76_1.0 Domestic ferret 233 47
No Yes Ailuropoda melanoleuca 76_1 Giant panda 261 52
No Yes Canis familiaris 76_3.1 Dog 374 66
No Yes Felis catus 76_6.2 Domestic cat 246 53
No Yes Equus caballus 76_2 Horse 321 60
No Yes Myotis lucifugus 76_2.0 Little brown bat 187 45
No Yes Pteropus vampyrus 76_1 Large flying fox 203 43
No Yes Sorex araneus 76_1 European shrew 106 25
No Yes Erinaceus europaeus 76 Western European hedgehog 139 33
No Yes Procavia capensis 76_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 76_3 African savanna elephant 236 56
No Yes Echinops telfairi 76 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 268 57
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 76_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 228 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 214 49
No Yes Ornithorhynchus anatinus 76_5 Platypus 206 53
No Yes Saccoglossus kowalevskii v3.0   1261 297
No Yes Petromyzon marinus 76_7.0 Sea lamprey 203 25
No Yes Meleagris gallopavo 76_2 Turkey 201 50
No Yes Gallus gallus 76_4 Chicken 222 45
No Yes Anas platyrhynchos 76_1.0 Mallard 185 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 193 44
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 218 43
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 212 59
No Yes Anolis carolinensis 76_2.0 Green anole 230 49
No Yes Xenopus laevis African clawed frog 176 45
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 231 62
No Yes Latimeria chalumnae 76_1 Coelacanth 249 52
No Yes Lepisosteus oculatus 76 Spotted gar 373 70
No Yes Gadus morhua 76_1 Atlantic cod 251 50
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 445 69
No Yes Takifugu rubripes 76_4 Torafugu 1153 201
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 365 68
No Yes Oryzias latipes 76_1 Japanese medaka 304 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 308 56
No Yes Poecilia formosa 76 Amazon molly 313 57
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 440 81
No Yes Astyanax mexicanus 76 Mexican tetra 293 73
No Yes Danio rerio 76_9 Zebrafish 537 103
No Yes Oikopleura dioica   54 30
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 454 80
No Yes Ciona intestinalis 76 Vase tunicate 156 67
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 601 193
No Yes Adineta vaga   274 125
No Yes Octopus bimaculoides 280   398 81
No Yes Crassostrea gigas 22 Pacific oyster 237 86
No Yes Lottia gigantea Owl limpet 212 60
No Yes Helobdella robusta   208 57
No Yes Capitella sp. I   359 115
No Yes Danaus plexippus OGS1.0 Monarch butterfly 163 38
No Yes Heliconius melpomene Postman butterfly 145 29
No Yes Bombyx mori Domestic silkworm 97 41
No Yes Nasonia vitripennis Jewel wasp 89 27
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 323 64
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 128 38
No Yes Linepithema humile v1.1 Argentine ant 122 43
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 116 43
No Yes Solenopsis invicta v.2.2.3 Red fire ant 98 38
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 126 36
No Yes Atta cephalotes v1.1   125 40
No Yes Camponotus floridanus v3.3 Florida carpenter ant 131 35
No Yes Lucilia cuprina Australian sheep blowfly 189 33
No Yes Drosophila grimshawi 1.3   174 37
No Yes Drosophila willistoni 1.3   172 39
No Yes Drosophila pseudoobscura 2.13   181 42
No Yes Drosophila persimilis 1.3   170 43
No Yes Drosophila suzukii   171 33
No Yes Drosophila yakuba 1.3   172 38
No Yes Drosophila simulans 1.3   99 33
No Yes Drosophila sechellia 1.3   155 40
No Yes Drosophila melanogaster 76_5 Fruit fly 643 97
No Yes Drosophila erecta 1.3   173 37
No Yes Drosophila ananassae 1.3   157 32
No Yes Drosophila virilis 1.2   158 36
No Yes Drosophila mojavensis 1.3   171 37
No Yes Megaselia scalaris 22   44 19
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 166 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 107 38
No Yes Anopheles darlingi 22 American malaria mosquito 118 28
No Yes Anopheles gambiae 49_3j African malaria mosquito 161 32
No Yes Tribolium castaneum 3.0 Red flour beetle 179 43
No Yes Pediculus humanus corporis (Early assembly) Human body louse 171 34
No Yes Acyrthosiphon pisum Pea aphid 150 36
No Yes Rhodnius prolixus 22   125 30
No Yes Daphnia pulex Common water flea 221 61
No Yes Strigamia maritima 22   202 47
No Yes Sarcoptes scabiei   128 42
No Yes Tetranychus urticae Two-spotted spider mite 193 71
No Yes Ixodes scapularis (Preliminary) Black-legged tick 139 44
No Yes Pristionchus pacificus   91 28
No Yes Meloidogyne incognita Southern root-knot nematode 95 18
No Yes Meloidogyne hapla   27 13
No Yes Onchocerca volvulus 22   73 17
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 129 27
No Yes Caenorhabditis japonica   103 24
No Yes Caenorhabditis brenneri   168 39
No Yes Caenorhabditis remanei   123 29
No Yes Caenorhabditis elegans 76_235 Roundworm 177 44
No Yes Caenorhabditis briggsae 2   118 26
No Yes Trichinella spiralis 22   119 32
No Yes Hymenolepis microstoma   45 11
No Yes Echinococcus multilocularis   39 13
No Yes Echinococcus granulosus   38 12
No Yes Taenia solium Pork tapeworm 35 17
No Yes Schistosoma mansoni   18 9
No Yes Mnemiopsis leidyi Sea walnut 413 204
No Yes Thelohanellus kitauei   270 126
No Yes Acropora digitifera v1.0   105 35
No Yes Nematostella vectensis 1.0 Starlet sea anemone 144 35
No Yes Hydra vulgaris   77 17
No Yes Amphimedon queenslandica   13 3
No Yes Trichoplax adhaerens   103 18
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   17 17
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 3 3
No Yes Triticum aestivum 22 Bread wheat 5 5
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   8 6
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Haliangium ochraceum DSM 14365   4 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 272 61
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 446 71
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 209 34
No Yes Ascaris suum Victoria/Ghent Pig roundworm 106 28
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 150 35
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 505 148
No Yes Homo sapiens (NCBI version) Human 303 75
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 220 45
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 74 20
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 63 26
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Homo sapiens 69_37 Human 219 45
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 212 44
No Yes Gorilla gorilla 69_3.1 Western gorilla 191 46
No Yes Pongo abelii 69_2 Sumatran orangutan 201 44
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 188 47
No Yes Macaca mulatta 69_1 Rhesus monkey 192 45
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 216 49
No Yes Otolemur garnettii 69_3 Small-eared galago 202 43
No Yes Microcebus murinus 69_1 Gray mouse lemur 178 42
No Yes Rattus norvegicus 69_3.4 Norway rat 203 51
No Yes Mus musculus 69_38 House mouse 222 47
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 182 41
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 193 41
No Yes Cavia porcellus 69_3 Domestic guinea pig 199 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 202 46
No Yes Ochotona princeps 69 American pika 188 39
No Yes Tupaia belangeri 69 Northern tree shrew 156 37
No Yes Sus scrofa 69_10.2 Pig 143 48
No Yes Bos taurus 69_3.1 Cattle 205 47
No Yes Vicugna pacos 69_1 Alpaca 117 23
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 196 45
No Yes Mustela putorius furo 69_1.0 Domestic ferret 230 46
No Yes Ailuropoda melanoleuca 69_1 Giant panda 224 48
No Yes Canis familiaris 69_3.1 Dog 243 49
No Yes Felis catus 69 Domestic cat 141 37
No Yes Equus caballus 69_2 Horse 223 52
No Yes Myotis lucifugus 69_2.0 Little brown bat 183 43
No Yes Pteropus vampyrus 69_1 Large flying fox 203 43
No Yes Sorex araneus 69_1 European shrew 106 25
No Yes Erinaceus europaeus 69 Western European hedgehog 139 33
No Yes Procavia capensis 69_1 Cape rock hyrax 174 36
No Yes Loxodonta africana 69_3 African savanna elephant 187 43
No Yes Echinops telfairi 69 Small Madagascar hedgehog 144 32
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 144 28
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 117 25
No Yes Macropus eugenii 69_1.0 Tammar wallaby 183 39
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 181 44
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 212 48
No Yes Ornithorhynchus anatinus 69_5 Platypus 175 47
No Yes Petromyzon marinus 69_7.0 Sea lamprey 168 21
No Yes Meleagris gallopavo 69_2 Turkey 169 44
No Yes Gallus gallus 69_2 Chicken 171 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 187 40
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 175 46
No Yes Anolis carolinensis 69_2.0 Green anole 223 47
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 220 53
No Yes Latimeria chalumnae 69_1 Coelacanth 192 43
No Yes Gadus morhua 69_1 Atlantic cod 237 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 307 53
No Yes Takifugu rubripes 69_4 Torafugu 272 48
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 314 55
No Yes Oryzias latipes 69_1 Japanese medaka 275 44
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 308 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 337 58
No Yes Danio rerio 69_9 Zebrafish 342 61
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 155 51
No Yes Ciona intestinalis 69 Vase tunicate 143 62
No Yes Drosophila melanogaster 69_5 Fruit fly 168 35
No Yes Caenorhabditis elegans 69_215 Roundworm 126 26
No Yes 1_Upper_euphotic (meta-genome)   3 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   143684 28917
No Yes Protozoadb 2010_08 (Protozoadb)   18 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   10524 2529
No Yes Uniprot 2018_03 genome   103788 23713
No Yes Global Ocean Sampling Expedition (GOS)   193 113
No Yes PDB chains (SCOP 1.75) (PDB)   26 18
No Yes Protein Data Bank (all PDB sequenc)   207 160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   96 34

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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