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  Home > Genomes > Caenorhabditis remanei > Spermadhesin, CUB domain domains


Spermadhesin, CUB domain superfamily domain assignments
in
Caenorhabditis remanei

Assignment details

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Caenorhabditis remanei has 131 significant domains in 84 proteins.

     

Sequence ID   Evalue   Region   Family  
CRE00165   0.000000000353   417-522   Spermadhesin, CUB domain  
CRE00286   1.07e-16   134-266   Spermadhesin, CUB domain  
CRE02547   0.0000406   48-112   Spermadhesin, CUB domain  
CRE02549   0.00000013   289-369   Spermadhesin, CUB domain  
CRE03130   0.0000000131   379-500   Spermadhesin, CUB domain  
CRE03214   0.0000000000981   347-457   Spermadhesin, CUB domain  
CRE05007   9.16e-28   161-265   Spermadhesin, CUB domain  
  1.83e-24   274-378   Spermadhesin, CUB domain  
CRE05008   1.31e-22   292-395   Spermadhesin, CUB domain  
  2.49e-17   166-282   Spermadhesin, CUB domain  
CRE05009   1.96e-24   159-261   Spermadhesin, CUB domain  
  1.31e-22   272-374   Spermadhesin, CUB domain  
CRE05011   7.59e-24   246-348   Spermadhesin, CUB domain  
  1.44e-22   358-461   Spermadhesin, CUB domain  
CRE05074   0.0000471   52-140   Spermadhesin, CUB domain  
CRE06149   0.00000000017   338-437   Spermadhesin, CUB domain  
CRE06152   0.0000000301   383-486   Spermadhesin, CUB domain  
CRE06187   0.0000955   43-132   Spermadhesin, CUB domain  
CRE07294   2.36e-16   489-588   Spermadhesin, CUB domain  
CRE07295   1.14e-19   379-480   Spermadhesin, CUB domain  
  0.0123   146-172,242-272   Spermadhesin, CUB domain  
CRE07486   1.31e-22   564-661   Spermadhesin, CUB domain  
  0.000000589   90-194   Spermadhesin, CUB domain  
  0.0314   301-370   Spermadhesin, CUB domain  
CRE07559   0.0000000000000017   29-148   Spermadhesin, CUB domain  
CRE07806   0.00000000000000222   42-146   Spermadhesin, CUB domain  
CRE08372   0.0000000471   421-504   Spermadhesin, CUB domain  
CRE08443   0.0000000000366   335-435   Spermadhesin, CUB domain  
CRE08678   0.0000000000000353   324-423   Spermadhesin, CUB domain  
CRE09070   0.0000000222   263-353   Spermadhesin, CUB domain  
CRE09072   0.00000013   289-369   Spermadhesin, CUB domain  
CRE09425   0.0000000000196   327-429   Spermadhesin, CUB domain  
CRE09481   3.4e-28   232-330   Spermadhesin, CUB domain  
CRE09482   3.66e-30   172-271   Spermadhesin, CUB domain  
CRE09483   1.83e-29   317-417   Spermadhesin, CUB domain  
CRE09484   6.41e-28   318-420   Spermadhesin, CUB domain  
CRE09485   2.22e-28   331-431   Spermadhesin, CUB domain  
CRE09486   6.02e-25   313-414   Spermadhesin, CUB domain  
CRE09540   1.31e-17   180-281   Spermadhesin, CUB domain  
CRE09543   8.64e-18   349-450   Spermadhesin, CUB domain  
CRE10143   0.00000366   50-87,181-219   Spermadhesin, CUB domain  
CRE11099   5.36e-25   125-230   Spermadhesin, CUB domain  
CRE11909   0.0000000157   398-490   Spermadhesin, CUB domain  
CRE13166   0.0000209   50-90   Spermadhesin, CUB domain  
CRE13170   0.0000576   50-88,189-229   Spermadhesin, CUB domain  
CRE13570   3.4e-28   323-423   Spermadhesin, CUB domain  
CRE13571   0.00000000000236   308-401   Spermadhesin, CUB domain  
CRE13573   3.93e-19   310-416   Spermadhesin, CUB domain  
CRE13613   9.29e-20   283-387   Spermadhesin, CUB domain  
CRE13614   3.27e-18   315-419   Spermadhesin, CUB domain  
CRE14202   3.27e-21   161-301   Spermadhesin, CUB domain  
  4.19e-21   29-141   Spermadhesin, CUB domain  
CRE14268   2.49e-17   362-476   Spermadhesin, CUB domain  
CRE14502   0.0000000000000103   322-420   Spermadhesin, CUB domain  
CRE14503   0.0000000017   326-425   Spermadhesin, CUB domain  
CRE14634   0.0000000000262   322-427   Spermadhesin, CUB domain  
CRE14636   0.0000000000196   339-439   Spermadhesin, CUB domain  
CRE14637   4.06e-18   278-379   Spermadhesin, CUB domain  
CRE14706   0.0000000602   267-370   Spermadhesin, CUB domain  
CRE14714   0.000000000000051   292-390   Spermadhesin, CUB domain  
CRE15025   0.00000837   46-112   Spermadhesin, CUB domain  
CRE15032   4.32e-25   125-230   Spermadhesin, CUB domain  
CRE15306   1.96e-18   73-191   Spermadhesin, CUB domain  
CRE15389   0.000000000222   364-467   Spermadhesin, CUB domain  
CRE16002   0.00000759   299-403   Spermadhesin, CUB domain  
CRE17239   2.62e-18   360-473   Spermadhesin, CUB domain  
CRE17942   0.00000107   306-431   Spermadhesin, CUB domain  
CRE17957   0.0000981   481-579   Spermadhesin, CUB domain  
  0.000314   49-129   Spermadhesin, CUB domain  
CRE18076   0.00000157   404-512   Spermadhesin, CUB domain  
CRE18785   9.94e-29   134-234   Spermadhesin, CUB domain  
  8.77e-23   21-114   Spermadhesin, CUB domain  
CRE20727   0.000000000471   561-667   Spermadhesin, CUB domain  
CRE20736   5.63e-26   162-267   Spermadhesin, CUB domain  
  1.19e-23   457-575   Spermadhesin, CUB domain  
  5.23e-18   598-717   Spermadhesin, CUB domain  
  0.00000000116   51-134   Spermadhesin, CUB domain  
  0.00000000262   292-440   Spermadhesin, CUB domain  
CRE21231   4.19e-23   163-264   Spermadhesin, CUB domain  
  0.0000000576   276-335   Spermadhesin, CUB domain  
CRE21960   0.0000272   310-419   Spermadhesin, CUB domain  
CRE22350   1.03e-18   560-654   Spermadhesin, CUB domain  
  0.0000000157   50-159   Spermadhesin, CUB domain  
  0.00015   314-348   Spermadhesin, CUB domain  
CRE23368   0.0000445   36-143   Spermadhesin, CUB domain  
CRE24163   8.9e-22   461-580   Spermadhesin, CUB domain  
  0.00000000000051   32-152   Spermadhesin, CUB domain  
  0.00000000000379   166-273   Spermadhesin, CUB domain  
  0.000000209   328-442   Spermadhesin, CUB domain  
CRE24574   0.000000000000602   301-364   Spermadhesin, CUB domain  
CRE24599   0.000000000000115   308-404   Spermadhesin, CUB domain  
CRE24637   2.22e-28   313-412   Spermadhesin, CUB domain  
CRE25103   2.88e-18   373-490   Spermadhesin, CUB domain  
CRE25137   0.0000000000000366   304-407   Spermadhesin, CUB domain  
CRE26118   0.000000116   354-454   Spermadhesin, CUB domain  
CRE27138   9.03e-33   970-1088   Spermadhesin, CUB domain  
  1.83e-26   2379-2488   Spermadhesin, CUB domain  
  1.44e-24   3319-3424   Spermadhesin, CUB domain  
  1.96e-21   3043-3169   Spermadhesin, CUB domain  
  9.94e-20   2913-3038   Spermadhesin, CUB domain  
  1.06e-18   1334-1461   Spermadhesin, CUB domain  
  2.49e-18   672-738,780-840   Spermadhesin, CUB domain  
  5.23e-18   3433-3565   Spermadhesin, CUB domain  
  1.2e-16   546-674   Spermadhesin, CUB domain  
  4.06e-16   2501-2597   Spermadhesin, CUB domain  
  0.00000000000000249   2108-2240   Spermadhesin, CUB domain  
  0.000000000000981   3706-3844   Spermadhesin, CUB domain  
  0.00000000000327   3171-3280   Spermadhesin, CUB domain  
  0.00000000000523   1090-1210   Spermadhesin, CUB domain  
  0.00000000000733   1860-1956   Spermadhesin, CUB domain  
  0.0000000000123   2253-2358   Spermadhesin, CUB domain  
  0.0000000000262   1207-1335   Spermadhesin, CUB domain  
  0.0000000000772   3860-3980   Spermadhesin, CUB domain  
  0.000000000393   1464-1587   Spermadhesin, CUB domain  
  0.000000000746   1598-1719   Spermadhesin, CUB domain  
  0.00000000864   3564-3688   Spermadhesin, CUB domain  
  0.000000615   421-532   Spermadhesin, CUB domain  
  0.000000733   848-966   Spermadhesin, CUB domain  
  0.00000196   2619-2729   Spermadhesin, CUB domain  
CRE27653   4.32e-37   677-784   Spermadhesin, CUB domain  
  6.28e-30   361-476   Spermadhesin, CUB domain  
  1.57e-28   521-625   Spermadhesin, CUB domain  
  7.07e-25   784-900   Spermadhesin, CUB domain  
  3.53e-16   246-358   Spermadhesin, CUB domain  
CRE27799   3.93e-26   227-338   Spermadhesin, CUB domain  
  0.00000000785   341-387   Spermadhesin, CUB domain  
CRE27800   0.0000000000000458   68-182   Spermadhesin, CUB domain  
  0.00000000458   2-66   Spermadhesin, CUB domain  
CRE27863   1.96e-18   298-413   Spermadhesin, CUB domain  
CRE27864   4.06e-17   312-411   Spermadhesin, CUB domain  
CRE28046   1.57e-17   168-264   Spermadhesin, CUB domain  
  0.00000000000602   15-87   Spermadhesin, CUB domain  
CRE30801   0.0000406   42-87,194-235   Spermadhesin, CUB domain  
CRE31017   2.88e-28   434-544   Spermadhesin, CUB domain  
  0.00000000000114   305-398   Spermadhesin, CUB domain  
 
Weak hits:
CRE01872   0.0593   2706-2789   Spermadhesin, CUB domain  
CRE01877   0.0136   317-435   Spermadhesin, CUB domain  
CRE02497   0.00785   39-115   Spermadhesin, CUB domain  
CRE02502   0.00144   51-133   Spermadhesin, CUB domain  
CRE05403   0.0344   34-124   Spermadhesin, CUB domain  
CRE05626   0.0192   155-227   Spermadhesin, CUB domain  
CRE05627   0.0192   51-122   Spermadhesin, CUB domain  
CRE05628   0.00445   46-129   Spermadhesin, CUB domain  
CRE05630   0.0301   37-127   Spermadhesin, CUB domain  
CRE05631   0.0209   152-221   Spermadhesin, CUB domain  
CRE07818   0.0194   178-238   Spermadhesin, CUB domain  
CRE09276   0.00471   50-104   Spermadhesin, CUB domain  
CRE10138   0.000994   43-88,189-217   Spermadhesin, CUB domain  
CRE10139   0.00111   17-134   Spermadhesin, CUB domain  
CRE10140   0.00055   192-247   Spermadhesin, CUB domain  
CRE10142   0.0877   57-132   Spermadhesin, CUB domain  
CRE10144   0.00275   580-610   Spermadhesin, CUB domain  
CRE10145   0.000523   23-91   Spermadhesin, CUB domain  
CRE11190   0.0445   219-307   Spermadhesin, CUB domain  
CRE11276   0.00746   271-350   Spermadhesin, CUB domain  
CRE11277   0.00536   294-385   Spermadhesin, CUB domain  
CRE11376   0.0123   23-99   Spermadhesin, CUB domain  
  0.0746   364-474   Spermadhesin, CUB domain  
CRE12454   0.046   31-141   Spermadhesin, CUB domain  
CRE12924   0.000106   48-130   Spermadhesin, CUB domain  
CRE13071   0.00222   52-136   Spermadhesin, CUB domain  
  0.0942   365-461   Spermadhesin, CUB domain  
CRE13169   0.0017   17-134   Spermadhesin, CUB domain  
  0.00667   642-698   Spermadhesin, CUB domain  
CRE15021   0.0353   42-98   Spermadhesin, CUB domain  
  0.0449   434-470,563-603   Spermadhesin, CUB domain  
CRE15879   0.00123   46-126   Spermadhesin, CUB domain  
CRE15916   0.00164   33-143   Spermadhesin, CUB domain  
CRE16041   0.00488   53-81   Spermadhesin, CUB domain  
CRE16043   0.000903   51-110   Spermadhesin, CUB domain  
CRE16045   0.00284   51-118   Spermadhesin, CUB domain  
CRE18473   0.0239   438-557   Spermadhesin, CUB domain  
CRE20535   0.0329   52-117   Spermadhesin, CUB domain  
CRE20536   0.0085   60-126   Spermadhesin, CUB domain  
CRE20885   0.009   22-133   Spermadhesin, CUB domain  
CRE21518   0.000314   21-82,186-225   Spermadhesin, CUB domain  
CRE22227   0.000602   51-143   Spermadhesin, CUB domain  
CRE22228   0.00795   31-106   Spermadhesin, CUB domain  
CRE22229   0.000183   48-130   Spermadhesin, CUB domain  
CRE22268   0.0602   23-72   Spermadhesin, CUB domain  
CRE22464   0.068   84-117   Spermadhesin, CUB domain  
CRE23511   0.00144   133-242   Spermadhesin, CUB domain  
CRE23513   0.000968   47-142   Spermadhesin, CUB domain  
CRE23514   0.000877   44-133   Spermadhesin, CUB domain  
CRE24651   0.00085   51-143   Spermadhesin, CUB domain  
CRE24702   0.000288   41-131   Spermadhesin, CUB domain  
CRE24703   0.000196   60-142   Spermadhesin, CUB domain  
CRE27802   0.00436   198-245   Spermadhesin, CUB domain  
CRE30560   0.00942   50-115   Spermadhesin, CUB domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   194765 194765
No Yes Homo sapiens 76_38 Human 549 207
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 156 52
No Yes Gorilla gorilla 76_3.1 Western gorilla 240 78
No Yes Pongo abelii 76_2 Sumatran orangutan 156 55
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 174 54
No Yes Papio anubis 76 Olive baboon 142 57
No Yes Macaca mulatta 76_1 Rhesus monkey 300 105
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 314 109
No Yes Otolemur garnettii 76_3 Small-eared galago 156 52
No Yes Microcebus murinus 76_1 Gray mouse lemur 125 46
No Yes Rattus norvegicus 76_5.0 Norway rat 156 61
No Yes Mus musculus 76_38 House mouse 266 89
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 133 42
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 129 54
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 157 51
No Yes Cavia porcellus 76_3 Domestic guinea pig 145 52
No Yes Oryctolagus cuniculus 76_2 Rabbit 158 53
No Yes Ochotona princeps 76 American pika 133 47
No Yes Tupaia belangeri 76 Northern tree shrew 133 47
No Yes Sus scrofa 76_10.2 Pig 157 76
No Yes Bos taurus 76_3.1 Cattle 164 61
No Yes Ovis aries 76_3.1 Sheep 205 64
No Yes Vicugna pacos 76_1 Alpaca 114 39
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 149 49
No Yes Mustela putorius furo 76_1.0 Domestic ferret 167 54
No Yes Ailuropoda melanoleuca 76_1 Giant panda 178 56
No Yes Canis familiaris 76_3.1 Dog 219 77
No Yes Felis catus 76_6.2 Domestic cat 157 53
No Yes Equus caballus 76_2 Horse 304 67
No Yes Myotis lucifugus 76_2.0 Little brown bat 132 45
No Yes Pteropus vampyrus 76_1 Large flying fox 155 53
No Yes Sorex araneus 76_1 European shrew 103 34
No Yes Erinaceus europaeus 76 Western European hedgehog 135 44
No Yes Procavia capensis 76_1 Cape rock hyrax 130 44
No Yes Loxodonta africana 76_3 African savanna elephant 182 62
No Yes Echinops telfairi 76 Small Madagascar hedgehog 130 42
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 189 68
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 101 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 131 45
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 137 60
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 152 54
No Yes Ornithorhynchus anatinus 76_5 Platypus 140 63
No Yes Saccoglossus kowalevskii v3.0   623 240
No Yes Petromyzon marinus 76_7.0 Sea lamprey 80 30
No Yes Meleagris gallopavo 76_2 Turkey 143 61
No Yes Gallus gallus 76_4 Chicken 147 49
No Yes Anas platyrhynchos 76_1.0 Mallard 150 53
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 135 51
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 147 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 171 60
No Yes Anolis carolinensis 76_2.0 Green anole 135 44
No Yes Xenopus laevis African clawed frog 238 98
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 219 83
No Yes Latimeria chalumnae 76_1 Coelacanth 166 71
No Yes Lepisosteus oculatus 76 Spotted gar 215 73
No Yes Gadus morhua 76_1 Atlantic cod 166 59
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 256 95
No Yes Takifugu rubripes 76_4 Torafugu 616 235
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 195 66
No Yes Oryzias latipes 76_1 Japanese medaka 164 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 179 56
No Yes Poecilia formosa 76 Amazon molly 174 60
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 243 93
No Yes Astyanax mexicanus 76 Mexican tetra 184 71
No Yes Danio rerio 76_9 Zebrafish 276 104
No Yes Oikopleura dioica   168 103
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 203 66
No Yes Ciona intestinalis 76 Vase tunicate 132 71
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 606 293
No Yes Adineta vaga   32 27
No Yes Octopus bimaculoides 280   108 50
No Yes Crassostrea gigas 22 Pacific oyster 226 128
No Yes Lottia gigantea Owl limpet 146 79
No Yes Helobdella robusta   83 43
No Yes Capitella sp. I   188 119
No Yes Danaus plexippus OGS1.0 Monarch butterfly 80 33
No Yes Heliconius melpomene Postman butterfly 31 20
No Yes Bombyx mori Domestic silkworm 46 26
No Yes Nasonia vitripennis Jewel wasp 57 22
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 213 44
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 64 22
No Yes Linepithema humile v1.1 Argentine ant 74 29
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 32
No Yes Solenopsis invicta v.2.2.3 Red fire ant 61 28
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 68 25
No Yes Atta cephalotes v1.1   67 31
No Yes Camponotus floridanus v3.3 Florida carpenter ant 69 25
No Yes Lucilia cuprina Australian sheep blowfly 95 28
No Yes Drosophila grimshawi 1.3   102 32
No Yes Drosophila willistoni 1.3   93 32
No Yes Drosophila pseudoobscura 2.13   96 32
No Yes Drosophila persimilis 1.3   89 31
No Yes Drosophila suzukii   129 33
No Yes Drosophila yakuba 1.3   96 31
No Yes Drosophila simulans 1.3   63 29
No Yes Drosophila sechellia 1.3   81 30
No Yes Drosophila melanogaster 76_5 Fruit fly 150 48
No Yes Drosophila erecta 1.3   95 32
No Yes Drosophila ananassae 1.3   94 32
No Yes Drosophila virilis 1.2   93 31
No Yes Drosophila mojavensis 1.3   95 33
No Yes Megaselia scalaris 22   25 17
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 109 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 75 31
No Yes Anopheles darlingi 22 American malaria mosquito 60 19
No Yes Anopheles gambiae 49_3j African malaria mosquito 65 25
No Yes Tribolium castaneum 3.0 Red flour beetle 76 29
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 24
No Yes Acyrthosiphon pisum Pea aphid 92 16
No Yes Rhodnius prolixus 22   93 39
No Yes Daphnia pulex Common water flea 170 98
No Yes Strigamia maritima 22   104 39
No Yes Sarcoptes scabiei   63 27
No Yes Tetranychus urticae Two-spotted spider mite 109 48
No Yes Ixodes scapularis (Preliminary) Black-legged tick 94 44
No Yes Pristionchus pacificus   144 115
No Yes Meloidogyne incognita Southern root-knot nematode 56 27
No Yes Meloidogyne hapla   28 14
No Yes Onchocerca volvulus 22   62 23
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 74 26
No Yes Caenorhabditis japonica   79 39
No Yes Caenorhabditis brenneri   149 99
No Yes Caenorhabditis remanei   131 84
No Yes Caenorhabditis elegans 76_235 Roundworm 143 86
No Yes Caenorhabditis briggsae 2   108 61
No Yes Trichinella spiralis 22   94 30
No Yes Hymenolepis microstoma   13 4
No Yes Echinococcus multilocularis   14 5
No Yes Echinococcus granulosus   14 5
No Yes Taenia solium Pork tapeworm 9 7
No Yes Schistosoma mansoni   18 10
No Yes Mnemiopsis leidyi Sea walnut 18 10
No Yes Thelohanellus kitauei   2 2
No Yes Acropora digitifera v1.0   253 159
No Yes Nematostella vectensis 1.0 Starlet sea anemone 130 76
No Yes Hydra vulgaris   70 28
No Yes Amphimedon queenslandica   10 8
No Yes Trichoplax adhaerens   63 24
No Yes Proterospongia sp. ATCC 50818   6 4
No Yes Monosiga brevicollis   4 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   7 6
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Actinidia chinensis Hongyang   2 1
No Yes Amborella trichopoda 22   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   2 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Thecamonas trahens ATCC 50062   39 25
No Yes Bigelowiella natans CCMP2755 22   5 3
No Yes Cyanophora paradoxa   80 32
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium vexans DAOM BR484 22   3 2
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Symbiodinium minutum clade B1 v1.2   15 13
No Yes Trichomonas vaginalis   3 3
No Yes Guillardia theta CCMP2712 v1.0   20 18
No Yes Emiliania huxleyi CCMP1516   34 31
No Yes [Ruminococcus] obeum   1 1
No Yes Saprospira grandis str. Lewin   3 2
No Yes Flexibacter litoralis DSM 6794   3 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Fluviicola taffensis DSM 16823   4 4
No Yes Lacinutrix sp. 5H-3-7-4   2 2
No Yes Croceibacter atlanticus HTCC2559   4 2
No Yes Aequorivita sublithincola DSM 14238   2 2
No Yes Zobellia galactanivorans   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   3 3
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   4 2
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   4 3
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 244 107
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 120 38
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 73 29
No Yes Ascaris suum Victoria/Ghent Pig roundworm 61 24
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 136 80
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Nonlabens dokdonensis DSW-6   4 4
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   5 4
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 594 229
No Yes Homo sapiens (NCBI version) Human 274 99
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 162 54
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 59 22
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 55 35
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 40 15
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Homo sapiens 69_37 Human 167 55
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 156 52
No Yes Gorilla gorilla 69_3.1 Western gorilla 160 55
No Yes Pongo abelii 69_2 Sumatran orangutan 152 53
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 153 50
No Yes Macaca mulatta 69_1 Rhesus monkey 168 58
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 156 53
No Yes Otolemur garnettii 69_3 Small-eared galago 156 52
No Yes Microcebus murinus 69_1 Gray mouse lemur 125 46
No Yes Rattus norvegicus 69_3.4 Norway rat 132 51
No Yes Mus musculus 69_38 House mouse 154 53
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 133 42
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 115 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 141 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 127 51
No Yes Ochotona princeps 69 American pika 133 47
No Yes Tupaia belangeri 69 Northern tree shrew 133 47
No Yes Sus scrofa 69_10.2 Pig 126 57
No Yes Bos taurus 69_3.1 Cattle 153 55
No Yes Vicugna pacos 69_1 Alpaca 114 39
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 149 49
No Yes Mustela putorius furo 69_1.0 Domestic ferret 153 52
No Yes Ailuropoda melanoleuca 69_1 Giant panda 138 49
No Yes Canis familiaris 69_3.1 Dog 156 53
No Yes Felis catus 69 Domestic cat 112 42
No Yes Equus caballus 69_2 Horse 151 48
No Yes Myotis lucifugus 69_2.0 Little brown bat 131 44
No Yes Pteropus vampyrus 69_1 Large flying fox 155 53
No Yes Sorex araneus 69_1 European shrew 103 34
No Yes Erinaceus europaeus 69 Western European hedgehog 135 44
No Yes Procavia capensis 69_1 Cape rock hyrax 130 44
No Yes Loxodonta africana 69_3 African savanna elephant 140 47
No Yes Echinops telfairi 69 Small Madagascar hedgehog 130 42
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 115 47
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 101 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 131 45
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 121 49
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 151 53
No Yes Ornithorhynchus anatinus 69_5 Platypus 136 61
No Yes Petromyzon marinus 69_7.0 Sea lamprey 79 29
No Yes Meleagris gallopavo 69_2 Turkey 118 50
No Yes Gallus gallus 69_2 Chicken 137 45
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 131 48
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 146 50
No Yes Anolis carolinensis 69_2.0 Green anole 131 44
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 191 68
No Yes Latimeria chalumnae 69_1 Coelacanth 144 62
No Yes Gadus morhua 69_1 Atlantic cod 165 58
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 176 70
No Yes Takifugu rubripes 69_4 Torafugu 154 61
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 175 57
No Yes Oryzias latipes 69_1 Japanese medaka 137 46
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 179 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 194 63
No Yes Danio rerio 69_9 Zebrafish 164 69
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 91 36
No Yes Ciona intestinalis 69 Vase tunicate 131 70
No Yes Drosophila melanogaster 69_5 Fruit fly 98 29
No Yes Caenorhabditis elegans 69_215 Roundworm 121 70
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   6 6
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   8 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   81204 31567
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Protozoadb 2010_08 (Protozoadb)   9 9
No Yes Sludge/US, Phrap Assembly (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   6977 2935
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   58517 26023
No Yes Global Ocean Sampling Expedition (GOS)   118 110
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   8 7
No Yes Protein Data Bank (all PDB sequenc)   106 66
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   174 174
No Yes TargetDB (Targets)   125 63
No Yes UniProt viral sequences (Viral)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.