SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Helobdella robusta > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Helobdella robusta

Assignment details

(show help)


Helobdella robusta has 57 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Helro1|158315   0.0000526   879-937   Complement control module/SCR domain  
jgi|Helro1|158373   0.000000000000945   376-446   Complement control module/SCR domain  
  0.0000000000445   431-494   Complement control module/SCR domain  
  0.00000000135   608-663   Complement control module/SCR domain  
jgi|Helro1|158375   0.00000000000000459   1602-1671   Complement control module/SCR domain  
  0.0000000000000167   124-191   Complement control module/SCR domain  
  0.000000000000181   1655-1716   Complement control module/SCR domain  
  0.000000000000347   301-367   Complement control module/SCR domain  
  0.000000000000375   987-1048   Complement control module/SCR domain  
  0.0000000000025   182-245   Complement control module/SCR domain  
  0.0000000000121   1486-1554   Complement control module/SCR domain  
  0.000000000032   413-481   Complement control module/SCR domain  
  0.0000000000375   239-312   Complement control module/SCR domain  
  0.0000000000959   945-995   Complement control module/SCR domain  
  0.000000000195   358-421   Complement control module/SCR domain  
  0.000000000306   754-808   Complement control module/SCR domain  
  0.000000000431   692-742   Complement control module/SCR domain  
  0.000000000473   599-667   Complement control module/SCR domain  
  0.0000000025   802-864   Complement control module/SCR domain  
  0.00000000306   476-542   Complement control module/SCR domain  
  0.00000000653   1544-1607   Complement control module/SCR domain  
  0.0000000542   540-604   Complement control module/SCR domain  
  0.000000153   855-917   Complement control module/SCR domain  
jgi|Helro1|159828   0.0000000000375   580-630   Complement control module/SCR domain  
  0.0000000612   621-684   Complement control module/SCR domain  
jgi|Helro1|163750   0.0000000000000222   309-377   Complement control module/SCR domain  
  0.000000000000347   272-325   Complement control module/SCR domain  
  0.000000000000473   11-67   Complement control module/SCR domain  
  0.00000000446   184-235   Complement control module/SCR domain  
jgi|Helro1|166364   0.0000000129   2084-2154   Complement control module/SCR domain  
  0.0000000195   1325-1399   Complement control module/SCR domain  
  0.0000000653   1459-1530   Complement control module/SCR domain  
  0.000000431   1970-2024   Complement control module/SCR domain  
  0.00000167   1608-1673   Complement control module/SCR domain  
  0.00000208   2802-2861   Complement control module/SCR domain  
  0.00000278   1037-1092   Complement control module/SCR domain  
  0.00000292   2023-2087   Complement control module/SCR domain  
  0.0000139   1406-1465   Complement control module/SCR domain  
  0.0000306   1086-1156   Complement control module/SCR domain  
  0.0000328   1783-1866   Complement control module/SCR domain  
  0.0000334   1698-1772   Complement control module/SCR domain  
  0.0000667   2298-2365   Complement control module/SCR domain  
  0.000195   2357-2428   Complement control module/SCR domain  
  0.000222   2734-2795   Complement control module/SCR domain  
  0.000612   2426-2484   Complement control module/SCR domain  
  0.00082   2237-2305   Complement control module/SCR domain  
  0.00352   2857-2925   Complement control module/SCR domain  
  0.00545   1561-1614   Complement control module/SCR domain  
  0.0139   1173-1245   Complement control module/SCR domain  
  0.0139   1272-1333   Complement control module/SCR domain  
  0.0375   1896-1947   Complement control module/SCR domain  
  0.0459   2526-2586   Complement control module/SCR domain  
  0.057   2484-2532   Complement control module/SCR domain  
jgi|Helro1|168802   0.0000786   843-902   Complement control module/SCR domain  
jgi|Helro1|174963   3.34e-17   226-294   Complement control module/SCR domain  
  3.15e-16   168-236   Complement control module/SCR domain  
  0.00000000000089   107-172   Complement control module/SCR domain  
  0.00000000000216   34-92   Complement control module/SCR domain  
  0.0000000000639   408-472   Complement control module/SCR domain  
  0.0000000000971   285-348   Complement control module/SCR domain  
  0.000000000116   455-530   Complement control module/SCR domain  
  0.00000112   341-400   Complement control module/SCR domain  
jgi|Helro1|180074   0.000000139   398-463   Complement control module/SCR domain  
  0.00000361   798-866   Complement control module/SCR domain  
  0.000108   864-925   Complement control module/SCR domain  
  0.000125   741-804   Complement control module/SCR domain  
  0.00264   603-676   Complement control module/SCR domain  
  0.0208   948-997   Complement control module/SCR domain  
  0.0336   693-743   Complement control module/SCR domain  
jgi|Helro1|189328   0.000000000418   104-169   Complement control module/SCR domain  
  0.00000000175   154-227   Complement control module/SCR domain  
  0.000648   36-89   Complement control module/SCR domain  
  0.000987   6-43   Complement control module/SCR domain  
jgi|Helro1|193921   0.00000000126   111-185   Complement control module/SCR domain  
  0.000000167   49-120   Complement control module/SCR domain  
 
Weak hits:
jgi|Helro1|161907   0.00116   322-366   Complement control module/SCR domain  
jgi|Helro1|168056   0.000949   31-68   Complement control module/SCR domain  
jgi|Helro1|168935   0.000511   861-920   Complement control module/SCR domain  
jgi|Helro1|171146   0.0177   86-138   Complement control module/SCR domain  
jgi|Helro1|180474   0.0134   215-265   Complement control module/SCR domain  
jgi|Helro1|183268   0.000124   91-133   Complement control module/SCR domain  
jgi|Helro1|190270   0.003   41-95   Complement control module/SCR domain  
jgi|Helro1|190685   0.0019   390-440   Complement control module/SCR domain  
jgi|Helro1|191892   0.000917   32-69   Complement control module/SCR domain  
jgi|Helro1|192925   0.012   12-45   Complement control module/SCR domain  
jgi|Helro1|193427   0.000577   165-192   Complement control module/SCR domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Complement control module/SCR domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.