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  Home > Genomes > Gasterosteus aculeatus 69_1 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Gasterosteus aculeatus 69_1

Assignment details

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Gasterosteus aculeatus 69_1 has 270 significant domains in 53 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000002266   0.0000000000000203   975-1036   Complement control module/SCR domain  
  0.00000000000027   87-152   Complement control module/SCR domain  
  0.00000000000417   572-633   Complement control module/SCR domain  
  0.000000000111   141-207   Complement control module/SCR domain  
  0.000000000877   205-271   Complement control module/SCR domain  
  0.00000000202   918-977   Complement control module/SCR domain  
  0.000000189   266-336   Complement control module/SCR domain  
  0.00000189   329-393   Complement control module/SCR domain  
  0.00111   44-93   Complement control module/SCR domain  
  0.0124   468-505   Complement control module/SCR domain  
ENSGACP00000004247   0.0000000000000202   286-352   Complement control module/SCR domain  
  0.00000000000125   344-409   Complement control module/SCR domain  
  0.00000000000223   85-144   Complement control module/SCR domain  
  0.00000000000764   149-207   Complement control module/SCR domain  
  0.00000000000877   399-460   Complement control module/SCR domain  
  0.00000000944   240-296   Complement control module/SCR domain  
  0.000000391   26-99   Complement control module/SCR domain  
ENSGACP00000004369   0.0000000000000136   110-171   Complement control module/SCR domain  
  0.00000000000514   256-314   Complement control module/SCR domain  
  0.00000114   57-124   Complement control module/SCR domain  
ENSGACP00000004861   0.000000000639   670-726   Complement control module/SCR domain  
ENSGACP00000005199   1.16e-20   3113-3184   Complement control module/SCR domain  
  7.23e-19   2997-3065   Complement control module/SCR domain  
  1.05e-18   3173-3242   Complement control module/SCR domain  
  1.35e-18   2758-2826   Complement control module/SCR domain  
  7.29e-18   2873-2946   Complement control module/SCR domain  
  8.36e-18   2815-2883   Complement control module/SCR domain  
  4.45e-17   3054-3124   Complement control module/SCR domain  
  0.00000000000000167   2929-2990   Complement control module/SCR domain  
  0.00000000000000361   2510-2583   Complement control module/SCR domain  
  0.00000000000000639   2699-2768   Complement control module/SCR domain  
  0.0000000000000101   2165-2233   Complement control module/SCR domain  
  0.0000000000000208   427-498   Complement control module/SCR domain  
  0.0000000000000264   3293-3360   Complement control module/SCR domain  
  0.0000000000000297   1469-1533   Complement control module/SCR domain  
  0.000000000000054   1642-1707   Complement control module/SCR domain  
  0.0000000000000702   1819-1883   Complement control module/SCR domain  
  0.0000000000000715   2572-2639   Complement control module/SCR domain  
  0.000000000000114   1993-2055   Complement control module/SCR domain  
  0.000000000000117   951-1010   Complement control module/SCR domain  
  0.000000000000167   605-667   Complement control module/SCR domain  
  0.000000000000347   118-182   Complement control module/SCR domain  
  0.000000000000751   776-846   Complement control module/SCR domain  
  0.000000000000796   1295-1357   Complement control module/SCR domain  
  0.00000000000132   3225-3287   Complement control module/SCR domain  
  0.00000000000148   1124-1186   Complement control module/SCR domain  
  0.0000000000135   2647-2710   Complement control module/SCR domain  
  0.0000000000195   3352-3410   Complement control module/SCR domain  
  0.000000000702   2336-2400   Complement control module/SCR domain  
ENSGACP00000005554   0.000000000278   818-877   Complement control module/SCR domain  
ENSGACP00000006289   0.000000000000115   148-207   Complement control module/SCR domain  
  0.0000000000292   92-159   Complement control module/SCR domain  
  0.00000000153   30-99   Complement control module/SCR domain  
ENSGACP00000006353   0.0000000000000181   274-344   Complement control module/SCR domain  
  0.0000000195   341-404   Complement control module/SCR domain  
ENSGACP00000007054   0.00000000000000556   83-140   Complement control module/SCR domain  
ENSGACP00000007430   0.00000000473   706-759   Complement control module/SCR domain  
ENSGACP00000007495   0.000000000139   659-714   Complement control module/SCR domain  
ENSGACP00000007791   0.0000000000000121   673-741   Complement control module/SCR domain  
  0.0000000000000611   984-1045   Complement control module/SCR domain  
  0.000000000000256   87-152   Complement control module/SCR domain  
  0.0000000000111   561-622   Complement control module/SCR domain  
  0.0000000000607   141-207   Complement control module/SCR domain  
  0.000000000175   205-271   Complement control module/SCR domain  
  0.000000000661   926-981   Complement control module/SCR domain  
  0.00000000202   791-858   Complement control module/SCR domain  
  0.00000000499   727-795   Complement control module/SCR domain  
  0.000000202   266-336   Complement control module/SCR domain  
  0.00000195   329-393   Complement control module/SCR domain  
  0.00111   44-93   Complement control module/SCR domain  
  0.00795   456-494   Complement control module/SCR domain  
  0.0275   498-554   Complement control module/SCR domain  
  0.0715   628-678   Complement control module/SCR domain  
ENSGACP00000007865   0.00000000000222   167-223   Complement control module/SCR domain  
  0.00000000000737   100-163   Complement control module/SCR domain  
  0.00000806   36-86   Complement control module/SCR domain  
ENSGACP00000007937   0.000000000000264   39-99   Complement control module/SCR domain  
  0.00000000089   109-169   Complement control module/SCR domain  
ENSGACP00000008333   0.000000000000125   130-195   Complement control module/SCR domain  
ENSGACP00000008358   5.53e-19   1908-1976   Complement control module/SCR domain  
  1.12e-18   1965-2033   Complement control module/SCR domain  
  1.81e-17   2204-2274   Complement control module/SCR domain  
  2.5e-17   2263-2335   Complement control module/SCR domain  
  5.7e-17   2147-2215   Complement control module/SCR domain  
  7.64e-17   2024-2090   Complement control module/SCR domain  
  5.26e-16   2324-2393   Complement control module/SCR domain  
  8.2e-16   2444-2512   Complement control module/SCR domain  
  0.00000000000000126   2079-2140   Complement control module/SCR domain  
  0.00000000000000528   2383-2439   Complement control module/SCR domain  
  0.0000000000000167   1141-1203   Complement control module/SCR domain  
  0.0000000000000459   860-925   Complement control module/SCR domain  
  0.0000000000000709   1658-1731   Complement control module/SCR domain  
  0.0000000000000723   686-750   Complement control module/SCR domain  
  0.000000000000189   1313-1382   Complement control module/SCR domain  
  0.000000000000283   1720-1782   Complement control module/SCR domain  
  0.000000000000334   1849-1906   Complement control module/SCR domain  
  0.000000000000584   2503-2560   Complement control module/SCR domain  
  0.000000000000648   168-227   Complement control module/SCR domain  
  0.000000000000661   1794-1860   Complement control module/SCR domain  
  0.000000000000863   341-403   Complement control module/SCR domain  
  0.0000000000122   1484-1549   Complement control module/SCR domain  
  0.0000000000167   512-574   Complement control module/SCR domain  
  0.00000000792   1-59   Complement control module/SCR domain  
ENSGACP00000009161   0.0000000000000115   572-633   Complement control module/SCR domain  
  0.0000025   627-684   Complement control module/SCR domain  
ENSGACP00000009810   9.31e-19   3093-3162   Complement control module/SCR domain  
  6.25e-18   3033-3104   Complement control module/SCR domain  
  1.48e-17   2677-2745   Complement control module/SCR domain  
  7.37e-17   2917-2984   Complement control module/SCR domain  
  1.62e-16   2734-2802   Complement control module/SCR domain  
  0.00000000000000135   2405-2478   Complement control module/SCR domain  
  0.00000000000000681   2794-2862   Complement control module/SCR domain  
  0.00000000000000681   2974-3044   Complement control module/SCR domain  
  0.0000000000000135   1537-1600   Complement control module/SCR domain  
  0.0000000000000195   3213-3277   Complement control module/SCR domain  
  0.0000000000000639   321-390   Complement control module/SCR domain  
  0.0000000000000792   2594-2650   Complement control module/SCR domain  
  0.000000000000148   2468-2534   Complement control module/SCR domain  
  0.000000000000167   1364-1429   Complement control module/SCR domain  
  0.00000000000027   1714-1779   Complement control module/SCR domain  
  0.000000000000292   845-905   Complement control module/SCR domain  
  0.00000000000031   117-177   Complement control module/SCR domain  
  0.000000000000347   1189-1254   Complement control module/SCR domain  
  0.000000000000584   1888-1950   Complement control module/SCR domain  
  0.000000000000737   499-564   Complement control module/SCR domain  
  0.00000000000135   2061-2129   Complement control module/SCR domain  
  0.00000000000195   670-733   Complement control module/SCR domain  
  0.0000000000025   2849-2910   Complement control module/SCR domain  
  0.00000000000417   3146-3207   Complement control module/SCR domain  
  0.00000000000796   1018-1087   Complement control module/SCR domain  
  0.0000000000364   2231-2295   Complement control module/SCR domain  
  0.000000000167   3268-3329   Complement control module/SCR domain  
  0.000000000299   2540-2605   Complement control module/SCR domain  
ENSGACP00000010402   0.00000000000189   12-75   Complement control module/SCR domain  
  0.000000000709   79-140   Complement control module/SCR domain  
ENSGACP00000011253   0.000000000000025   60-118   Complement control module/SCR domain  
ENSGACP00000013420   0.00000000000025   315-385   Complement control module/SCR domain  
  0.0000000000598   382-454   Complement control module/SCR domain  
ENSGACP00000013480   0.0000000000417   3406-3466   Complement control module/SCR domain  
ENSGACP00000014119   9.31e-20   244-323   Complement control module/SCR domain  
  0.0000000000000351   177-241   Complement control module/SCR domain  
  0.00000000000364   125-193   Complement control module/SCR domain  
  0.000000108   46-107   Complement control module/SCR domain  
ENSGACP00000014578   0.00000000000000202   138-205   Complement control module/SCR domain  
  0.0000000000000473   81-149   Complement control module/SCR domain  
  0.00000000000153   193-256   Complement control module/SCR domain  
  0.00000000000848   39-91   Complement control module/SCR domain  
ENSGACP00000015060   0.0000000000959   281-344   Complement control module/SCR domain  
ENSGACP00000015433   8.76e-16   324-397   Complement control module/SCR domain  
  0.0000000000000236   260-335   Complement control module/SCR domain  
  0.00000000000012   386-461   Complement control module/SCR domain  
  0.000000000000389   205-265   Complement control module/SCR domain  
  0.00000000000103   516-580   Complement control module/SCR domain  
  0.00000000000542   472-530   Complement control module/SCR domain  
  0.000000945   592-642   Complement control module/SCR domain  
ENSGACP00000016298   0.00000000148   36-96   Complement control module/SCR domain  
ENSGACP00000016955   0.0000000000000153   579-644   Complement control module/SCR domain  
  0.000000000000375   639-700   Complement control module/SCR domain  
  0.0000000000011   707-766   Complement control module/SCR domain  
  0.00000000000153   221-285   Complement control module/SCR domain  
  0.000000000405   401-466   Complement control module/SCR domain  
ENSGACP00000017374   0.0000000000361   1155-1215   Complement control module/SCR domain  
ENSGACP00000017637   0.00000000000025   144-213   Complement control module/SCR domain  
  0.00000000000153   204-266   Complement control module/SCR domain  
ENSGACP00000017692   0.000000000653   113-167   Complement control module/SCR domain  
  0.00000764   63-110   Complement control module/SCR domain  
ENSGACP00000018101   0.000000000132   156-219   Complement control module/SCR domain  
  0.0386   2-32   Complement control module/SCR domain  
ENSGACP00000018900   0.0000000195   1256-1329   Complement control module/SCR domain  
  0.0000000514   1194-1259   Complement control module/SCR domain  
  0.00000032   1320-1378   Complement control module/SCR domain  
  0.0221   1129-1198   Complement control module/SCR domain  
ENSGACP00000019453   0.000000000000292   507-564   Complement control module/SCR domain  
  0.00000000000135   574-635   Complement control module/SCR domain  
  0.00000000000584   153-215   Complement control module/SCR domain  
  0.00000000347   329-393   Complement control module/SCR domain  
ENSGACP00000020030   0.000000000111   1088-1148   Complement control module/SCR domain  
ENSGACP00000020501   0.0000000000834   1388-1446   Complement control module/SCR domain  
ENSGACP00000021028   0.0000000000000459   80-148   Complement control module/SCR domain  
ENSGACP00000021184   9.71e-19   3041-3112   Complement control module/SCR domain  
  2.22e-18   2924-2993   Complement control module/SCR domain  
  3.1e-18   2740-2809   Complement control module/SCR domain  
  5.8e-18   2683-2751   Complement control module/SCR domain  
  3.91e-16   3101-3170   Complement control module/SCR domain  
  4.18e-16   2982-3052   Complement control module/SCR domain  
  0.00000000000000431   346-416   Complement control module/SCR domain  
  0.00000000000000667   1392-1462   Complement control module/SCR domain  
  0.00000000000000834   525-587   Complement control module/SCR domain  
  0.0000000000000138   3221-3289   Complement control module/SCR domain  
  0.0000000000000264   2089-2158   Complement control module/SCR domain  
  0.0000000000000292   2434-2507   Complement control module/SCR domain  
  0.0000000000000306   1917-1981   Complement control module/SCR domain  
  0.0000000000000486   2858-2918   Complement control module/SCR domain  
  0.0000000000000598   2799-2866   Complement control module/SCR domain  
  0.0000000000000917   144-204   Complement control module/SCR domain  
  0.000000000000153   695-763   Complement control module/SCR domain  
  0.000000000000256   1215-1279   Complement control module/SCR domain  
  0.000000000000292   1567-1630   Complement control module/SCR domain  
  0.000000000000375   2625-2687   Complement control module/SCR domain  
  0.000000000000702   1743-1806   Complement control module/SCR domain  
  0.000000000000823   2496-2562   Complement control module/SCR domain  
  0.00000000000148   870-930   Complement control module/SCR domain  
  0.00000000000181   3280-3337   Complement control module/SCR domain  
  0.00000000000306   3159-3216   Complement control module/SCR domain  
  0.00000000000364   2260-2323   Complement control module/SCR domain  
  0.00000000000769   1045-1106   Complement control module/SCR domain  
  0.0000000445   2578-2630   Complement control module/SCR domain  
ENSGACP00000021243   0.000000000337   267-323   Complement control module/SCR domain  
  0.0000000189   170-231   Complement control module/SCR domain  
  0.000000486   50-106   Complement control module/SCR domain  
  0.000000675   112-165   Complement control module/SCR domain  
ENSGACP00000021932   0.000000000542   1396-1457   Complement control module/SCR domain  
  0.00000000834   1274-1340   Complement control module/SCR domain  
  0.0000000114   1335-1404   Complement control module/SCR domain  
  0.011   1218-1277   Complement control module/SCR domain  
ENSGACP00000022393   0.0000000000000486   693-750   Complement control module/SCR domain  
ENSGACP00000022769   0.000000000000432   316-376   Complement control module/SCR domain  
ENSGACP00000022914   0.00000000000000111   105-166   Complement control module/SCR domain  
  0.00000000000653   252-310   Complement control module/SCR domain  
  0.000000000486   53-120   Complement control module/SCR domain  
ENSGACP00000023486   0.0000000000431   1041-1099   Complement control module/SCR domain  
ENSGACP00000023666   0.00000000153   643-709   Complement control module/SCR domain  
  0.0000208   698-757   Complement control module/SCR domain  
ENSGACP00000023675   0.0000000000000473   566-629   Complement control module/SCR domain  
  0.00000167   626-687   Complement control module/SCR domain  
ENSGACP00000024478   6.63e-19   85-153   Complement control module/SCR domain  
  5.26e-16   265-336   Complement control module/SCR domain  
  0.000000000000275   200-263   Complement control module/SCR domain  
  0.000000000178   142-203   Complement control module/SCR domain  
  0.0000000135   25-90   Complement control module/SCR domain  
ENSGACP00000024479   1.04e-17   265-337   Complement control module/SCR domain  
  0.00000000000000432   86-154   Complement control module/SCR domain  
  0.00000000000123   207-267   Complement control module/SCR domain  
  0.0000000275   25-91   Complement control module/SCR domain  
  0.0000195   143-216   Complement control module/SCR domain  
ENSGACP00000025329   8.06e-18   2882-2950   Complement control module/SCR domain  
  1.53e-17   2162-2231   Complement control module/SCR domain  
  1.95e-17   2765-2831   Complement control module/SCR domain  
  3.64e-17   2708-2776   Complement control module/SCR domain  
  4.18e-17   1979-2047   Complement control module/SCR domain  
  4.31e-16   2397-2468   Complement control module/SCR domain  
  5.84e-16   2220-2291   Complement control module/SCR domain  
  0.00000000000000175   2281-2347   Complement control module/SCR domain  
  0.00000000000000243   2573-2641   Complement control module/SCR domain  
  0.00000000000000297   3236-3292   Complement control module/SCR domain  
  0.00000000000000542   2516-2578   Complement control module/SCR domain  
  0.0000000000000138   1864-1931   Complement control module/SCR domain  
  0.0000000000000351   2939-3002   Complement control module/SCR domain  
  0.0000000000000417   3415-3472   Complement control module/SCR domain  
  0.0000000000000417   2823-2886   Complement control module/SCR domain  
  0.0000000000000584   1700-1763   Complement control module/SCR domain  
  0.0000000000000959   1806-1868   Complement control module/SCR domain  
  0.000000000000122   3296-3359   Complement control module/SCR domain  
  0.000000000000162   1921-1986   Complement control module/SCR domain  
  0.000000000000222   2457-2526   Complement control module/SCR domain  
  0.000000000000375   439-506   Complement control module/SCR domain  
  0.000000000000403   1646-1717   Complement control module/SCR domain  
  0.00000000000195   378-449   Complement control module/SCR domain  
  0.00000000000278   3113-3177   Complement control module/SCR domain  
  0.0000000000117   2339-2408   Complement control module/SCR domain  
  0.0000000000222   3353-3424   Complement control module/SCR domain  
  0.000000000031   3059-3120   Complement control module/SCR domain  
  0.000000000153   2036-2104   Complement control module/SCR domain  
  0.000000000167   2665-2712   Complement control module/SCR domain  
  0.0000000005   3001-3058   Complement control module/SCR domain  
  0.00000000106   2101-2168   Complement control module/SCR domain  
  0.0000000445   493-554   Complement control module/SCR domain  
  0.000005   727-780   Complement control module/SCR domain  
  0.00000751   3181-3240   Complement control module/SCR domain  
ENSGACP00000025349   0.000000129   30-103   Complement control module/SCR domain  
ENSGACP00000025392   0.00000000000945   96-160   Complement control module/SCR domain  
ENSGACP00000026829   0.0000000000000102   476-541   Complement control module/SCR domain  
  0.0000000000000528   536-599   Complement control module/SCR domain  
  0.0000000000256   298-362   Complement control module/SCR domain  
  0.0000000000473   120-184   Complement control module/SCR domain  
  0.00000000189   604-662   Complement control module/SCR domain  
ENSGACP00000027294   0.000000000000695   93-154   Complement control module/SCR domain  
  0.00000000000347   161-217   Complement control module/SCR domain  
  0.000000000639   41-101   Complement control module/SCR domain  
 
Weak hits:
ENSGACP00000000099   0.000287   41-92   Complement control module/SCR domain  
ENSGACP00000001000   0.065   205-249   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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