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  Home > Genomes > Gallus gallus 76_4 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
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Gallus gallus 76_4

Assignment details

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Gallus gallus 76_4 has 257 significant domains in 40 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGALP00000001779   1.39e-18   88-159   Complement control module/SCR domain  
  3.89e-16   214-277   Complement control module/SCR domain  
  0.00000000000000473   148-215   Complement control module/SCR domain  
  0.0000000000135   23-85   Complement control module/SCR domain  
  0.00000000222   348-403   Complement control module/SCR domain  
  0.00000153   281-339   Complement control module/SCR domain  
ENSGALP00000003079   0.0000000000000057   140-208   Complement control module/SCR domain  
ENSGALP00000003726   1.75e-18   581-655   Complement control module/SCR domain  
  3.35e-16   452-516   Complement control module/SCR domain  
  0.00000000000101   273-327   Complement control module/SCR domain  
  0.00000000000105   524-584   Complement control module/SCR domain  
  0.0000000000537   206-269   Complement control module/SCR domain  
  0.000000000405   393-449   Complement control module/SCR domain  
  0.00000000783   152-214   Complement control module/SCR domain  
  0.000000121   90-147   Complement control module/SCR domain  
  0.000000275   29-94   Complement control module/SCR domain  
ENSGALP00000003823   1.23e-17   1175-1238   Complement control module/SCR domain  
  0.0000000000000115   138-208   Complement control module/SCR domain  
  0.0000000000000419   84-155   Complement control module/SCR domain  
  0.000000000000125   1049-1111   Complement control module/SCR domain  
  0.000000000000197   811-872   Complement control module/SCR domain  
  0.000000000000367   1117-1176   Complement control module/SCR domain  
  0.000000000000367   631-688   Complement control module/SCR domain  
  0.00000000000131   937-1006   Complement control module/SCR domain  
  0.00000000000445   997-1061   Complement control module/SCR domain  
  0.0000000000223   206-265   Complement control module/SCR domain  
  0.0000000000695   565-626   Complement control module/SCR domain  
  0.00000000315   862-933   Complement control module/SCR domain  
  0.0000000148   516-575   Complement control module/SCR domain  
  0.000000017   450-510   Complement control module/SCR domain  
  0.0000000229   394-453   Complement control module/SCR domain  
  0.0000000511   263-328   Complement control module/SCR domain  
  0.0000000998   691-747   Complement control module/SCR domain  
  0.000000537   30-80   Complement control module/SCR domain  
  0.00000151   1242-1302   Complement control module/SCR domain  
  0.00000603   327-388   Complement control module/SCR domain  
ENSGALP00000004083   5.7e-19   2943-3010   Complement control module/SCR domain  
  1.48e-18   2703-2771   Complement control module/SCR domain  
  3.24e-18   3059-3130   Complement control module/SCR domain  
  4.86e-18   3119-3188   Complement control module/SCR domain  
  3.51e-17   2760-2828   Complement control module/SCR domain  
  1.39e-16   2644-2713   Complement control module/SCR domain  
  8.48e-16   2455-2528   Complement control module/SCR domain  
  9.73e-16   3000-3070   Complement control module/SCR domain  
  0.00000000000000202   372-444   Complement control module/SCR domain  
  0.00000000000000473   3239-3307   Complement control module/SCR domain  
  0.00000000000000702   2819-2886   Complement control module/SCR domain  
  0.0000000000000089   2875-2936   Complement control module/SCR domain  
  0.0000000000000208   896-956   Complement control module/SCR domain  
  0.0000000000000208   2111-2179   Complement control module/SCR domain  
  0.0000000000000306   1938-1999   Complement control module/SCR domain  
  0.0000000000000661   168-229   Complement control module/SCR domain  
  0.000000000000113   2518-2585   Complement control module/SCR domain  
  0.000000000000115   1587-1654   Complement control module/SCR domain  
  0.000000000000139   1414-1479   Complement control module/SCR domain  
  0.000000000000208   1239-1302   Complement control module/SCR domain  
  0.000000000000306   550-615   Complement control module/SCR domain  
  0.000000000000347   721-789   Complement control module/SCR domain  
  0.000000000001   3171-3233   Complement control module/SCR domain  
  0.00000000000264   3298-3356   Complement control module/SCR domain  
  0.00000000000306   1764-1828   Complement control module/SCR domain  
  0.00000000000324   2281-2347   Complement control module/SCR domain  
  0.00000000000607   1069-1131   Complement control module/SCR domain  
  0.00000000000931   2589-2651   Complement control module/SCR domain  
ENSGALP00000004154   1.27e-16   557-621   Complement control module/SCR domain  
  2.08e-16   493-566   Complement control module/SCR domain  
  2.22e-16   247-312   Complement control module/SCR domain  
  2.5e-16   309-375   Complement control module/SCR domain  
  4.03e-16   619-686   Complement control module/SCR domain  
  0.00000000000000486   369-442   Complement control module/SCR domain  
  0.000000000000012   186-256   Complement control module/SCR domain  
  0.0000000000000222   675-739   Complement control module/SCR domain  
  0.000000000000032   433-499   Complement control module/SCR domain  
ENSGALP00000004756   0.0000000000101   297-366   Complement control module/SCR domain  
  0.0000000000208   363-434   Complement control module/SCR domain  
ENSGALP00000005366   9.31e-16   236-307   Complement control module/SCR domain  
  0.00000000000000113   357-428   Complement control module/SCR domain  
  0.00000000000000959   296-368   Complement control module/SCR domain  
  0.0000000000000222   411-477   Complement control module/SCR domain  
  0.000000000000334   177-241   Complement control module/SCR domain  
ENSGALP00000006298   1.31e-20   287-370   Complement control module/SCR domain  
  3.06e-19   107-175   Complement control module/SCR domain  
  0.0000000000000433   229-291   Complement control module/SCR domain  
  0.000000000000354   46-117   Complement control module/SCR domain  
  0.00000000000197   164-238   Complement control module/SCR domain  
ENSGALP00000007134   0.0000000000584   1218-1292   Complement control module/SCR domain  
  0.00000639   1284-1341   Complement control module/SCR domain  
  0.0000117   1158-1224   Complement control module/SCR domain  
  0.0128   1090-1161   Complement control module/SCR domain  
ENSGALP00000008938   0.0000000000000135   667-732   Complement control module/SCR domain  
  0.000000000000389   726-788   Complement control module/SCR domain  
  0.000000000000983   794-853   Complement control module/SCR domain  
  0.000000000012   311-372   Complement control module/SCR domain  
  0.00000000256   485-544   Complement control module/SCR domain  
ENSGALP00000009342   0.0000000000000153   715-770   Complement control module/SCR domain  
ENSGALP00000009711   0.0000000000688   733-802   Complement control module/SCR domain  
ENSGALP00000010226   0.000000001   118-179   Complement control module/SCR domain  
  0.00000000378   23-82   Complement control module/SCR domain  
ENSGALP00000010867   0.000000000000514   2002-2062   Complement control module/SCR domain  
ENSGALP00000010977   0.00000000000000542   119-181   Complement control module/SCR domain  
  0.0000000000000612   266-325   Complement control module/SCR domain  
  0.0000000361   81-129   Complement control module/SCR domain  
ENSGALP00000011455   0.00000000032   1415-1477   Complement control module/SCR domain  
  0.00000000101   1345-1420   Complement control module/SCR domain  
  0.0000000118   1284-1350   Complement control module/SCR domain  
  0.000001   1214-1287   Complement control module/SCR domain  
ENSGALP00000011986   0.000000000000195   298-364   Complement control module/SCR domain  
ENSGALP00000012790   5.7e-17   275-346   Complement control module/SCR domain  
  0.000000000000111   337-407   Complement control module/SCR domain  
ENSGALP00000015282   0.000000000000138   134-194   Complement control module/SCR domain  
  0.000000000243   196-256   Complement control module/SCR domain  
  0.00000000297   8-69   Complement control module/SCR domain  
  0.0000000264   73-132   Complement control module/SCR domain  
ENSGALP00000015334   0.0000000000904   39-102   Complement control module/SCR domain  
ENSGALP00000019506   0.000000000445   133-193   Complement control module/SCR domain  
ENSGALP00000021582   0.00000000000306   872-931   Complement control module/SCR domain  
ENSGALP00000023499   0.000000000000129   358-432   Complement control module/SCR domain  
  0.000000000264   295-361   Complement control module/SCR domain  
ENSGALP00000023583   0.0000000000000347   351-425   Complement control module/SCR domain  
  0.000000000000737   284-354   Complement control module/SCR domain  
ENSGALP00000023901   0.000000000000472   557-622   Complement control module/SCR domain  
  0.000000445   613-670   Complement control module/SCR domain  
ENSGALP00000023910   0.0000000000181   644-709   Complement control module/SCR domain  
  0.000000584   699-755   Complement control module/SCR domain  
ENSGALP00000025241   0.00000000000000361   230-299   Complement control module/SCR domain  
  0.0000000000000584   171-241   Complement control module/SCR domain  
  0.00000000375   290-349   Complement control module/SCR domain  
ENSGALP00000025304   1.21e-19   2770-2839   Complement control module/SCR domain  
  3.61e-19   2145-2214   Complement control module/SCR domain  
  6.25e-19   3236-3299   Complement control module/SCR domain  
  7.51e-19   3294-3361   Complement control module/SCR domain  
  2.36e-18   1788-1856   Complement control module/SCR domain  
  3.34e-18   2886-2949   Complement control module/SCR domain  
  1.04e-17   3352-3421   Complement control module/SCR domain  
  1.06e-17   2712-2781   Complement control module/SCR domain  
  1.21e-17   2380-2449   Complement control module/SCR domain  
  2.36e-17   1846-1909   Complement control module/SCR domain  
  3.61e-17   1962-2030   Complement control module/SCR domain  
  6.25e-17   2496-2559   Complement control module/SCR domain  
  7.51e-17   2829-2891   Complement control module/SCR domain  
  8.62e-17   2944-3008   Complement control module/SCR domain  
  1.14e-16   3411-3477   Complement control module/SCR domain  
  2.22e-16   2438-2507   Complement control module/SCR domain  
  2.92e-16   3529-3588   Complement control module/SCR domain  
  5.8e-16   2554-2622   Complement control module/SCR domain  
  0.00000000000000375   1683-1746   Complement control module/SCR domain  
  0.00000000000000792   1906-1969   Complement control module/SCR domain  
  0.0000000000000115   2203-2274   Complement control module/SCR domain  
  0.0000000000000208   2265-2328   Complement control module/SCR domain  
  0.000000000000057   3059-3122   Complement control module/SCR domain  
  0.0000000000000987   3119-3182   Complement control module/SCR domain  
  0.00000000000012   2663-2723   Complement control module/SCR domain  
  0.000000000000222   368-439   Complement control module/SCR domain  
  0.000000000000222   1637-1700   Complement control module/SCR domain  
  0.000000000000375   429-496   Complement control module/SCR domain  
  0.000000000000445   2323-2388   Complement control module/SCR domain  
  0.00000000000334   2019-2087   Complement control module/SCR domain  
  0.00000000000445   3004-3064   Complement control module/SCR domain  
  0.00000000000945   3470-3532   Complement control module/SCR domain  
  0.0000000000153   3178-3242   Complement control module/SCR domain  
  0.00000000208   2084-2151   Complement control module/SCR domain  
  0.0000124   483-545   Complement control module/SCR domain  
  0.00556   719-780   Complement control module/SCR domain  
ENSGALP00000025911   1.16e-20   3083-3154   Complement control module/SCR domain  
  1.09e-18   2785-2853   Complement control module/SCR domain  
  1.89e-18   2728-2796   Complement control module/SCR domain  
  4.17e-18   2967-3035   Complement control module/SCR domain  
  1.2e-17   2844-2910   Complement control module/SCR domain  
  3.34e-16   3025-3088   Complement control module/SCR domain  
  3.91e-16   3143-3212   Complement control module/SCR domain  
  0.00000000000000222   397-469   Complement control module/SCR domain  
  0.00000000000000264   2899-2960   Complement control module/SCR domain  
  0.00000000000000389   2669-2729   Complement control module/SCR domain  
  0.00000000000000584   2135-2204   Complement control module/SCR domain  
  0.00000000000000584   2542-2609   Complement control module/SCR domain  
  0.00000000000000863   1963-2024   Complement control module/SCR domain  
  0.00000000000000903   3202-3258   Complement control module/SCR domain  
  0.0000000000000104   3263-3331   Complement control module/SCR domain  
  0.0000000000000364   921-981   Complement control module/SCR domain  
  0.0000000000000625   1439-1503   Complement control module/SCR domain  
  0.0000000000000944   1612-1677   Complement control module/SCR domain  
  0.000000000000139   575-634   Complement control module/SCR domain  
  0.000000000000139   2480-2553   Complement control module/SCR domain  
  0.000000000000292   1094-1158   Complement control module/SCR domain  
  0.000000000000513   193-254   Complement control module/SCR domain  
  0.000000000000681   1789-1855   Complement control module/SCR domain  
  0.00000000000127   1265-1327   Complement control module/SCR domain  
  0.00000000000208   2616-2680   Complement control module/SCR domain  
  0.00000000000236   3322-3380   Complement control module/SCR domain  
  0.00000000000337   746-812   Complement control module/SCR domain  
  0.0000000000863   2306-2369   Complement control module/SCR domain  
ENSGALP00000026309   9.44e-20   2659-2727   Complement control module/SCR domain  
  1e-18   2899-2967   Complement control module/SCR domain  
  2.97e-18   2716-2785   Complement control module/SCR domain  
  8.76e-17   2956-3026   Complement control module/SCR domain  
  5.98e-16   328-400   Complement control module/SCR domain  
  6.48e-16   3015-3077   Complement control module/SCR domain  
  8.63e-16   3075-3144   Complement control module/SCR domain  
  0.0000000000000025   3133-3190   Complement control module/SCR domain  
  0.00000000000000306   2775-2842   Complement control module/SCR domain  
  0.0000000000000032   2473-2542   Complement control module/SCR domain  
  0.00000000000000862   2837-2893   Complement control module/SCR domain  
  0.0000000000000216   2411-2484   Complement control module/SCR domain  
  0.0000000000000236   507-571   Complement control module/SCR domain  
  0.000000000000025   677-745   Complement control module/SCR domain  
  0.0000000000000264   1370-1434   Complement control module/SCR domain  
  0.0000000000000486   852-912   Complement control module/SCR domain  
  0.00000000000005   2601-2663   Complement control module/SCR domain  
  0.0000000000000584   1195-1264   Complement control module/SCR domain  
  0.0000000000000876   1544-1608   Complement control module/SCR domain  
  0.000000000000107   3195-3262   Complement control module/SCR domain  
  0.000000000000135   2066-2135   Complement control module/SCR domain  
  0.000000000000167   1894-1958   Complement control module/SCR domain  
  0.000000000000594   1720-1783   Complement control module/SCR domain  
  0.00000000000109   124-185   Complement control module/SCR domain  
  0.00000000000834   1025-1087   Complement control module/SCR domain  
  0.0000000000216   2237-2301   Complement control module/SCR domain  
  0.0000000000778   2535-2611   Complement control module/SCR domain  
  0.000000000445   3254-3311   Complement control module/SCR domain  
ENSGALP00000026355   0.0000000000236   739-795   Complement control module/SCR domain  
ENSGALP00000037775   0.0000000000005   1964-2024   Complement control module/SCR domain  
ENSGALP00000039526   9.04e-17   145-208   Complement control module/SCR domain  
  0.00000000000000181   396-459   Complement control module/SCR domain  
  0.00000000000000931   86-156   Complement control module/SCR domain  
  0.0000000000000852   210-279   Complement control module/SCR domain  
  0.000000000000653   270-341   Complement control module/SCR domain  
  0.00000000000973   334-391   Complement control module/SCR domain  
  0.0000000000256   24-93   Complement control module/SCR domain  
ENSGALP00000039538   2.22e-18   99-170   Complement control module/SCR domain  
  5.98e-17   541-605   Complement control module/SCR domain  
  0.00000000000000183   230-301   Complement control module/SCR domain  
  0.0000000000000222   422-485   Complement control module/SCR domain  
  0.0000000000000347   159-228   Complement control module/SCR domain  
  0.00000000000264   349-417   Complement control module/SCR domain  
  0.00000000000361   291-359   Complement control module/SCR domain  
  0.00000000000431   480-551   Complement control module/SCR domain  
  0.00000000367   35-108   Complement control module/SCR domain  
  0.0000000486   597-660   Complement control module/SCR domain  
ENSGALP00000041070   0.0000000000000553   638-702   Complement control module/SCR domain  
  0.00000000000181   697-759   Complement control module/SCR domain  
  0.000000000025   284-346   Complement control module/SCR domain  
  0.0000000000958   460-524   Complement control module/SCR domain  
  0.000000000528   765-824   Complement control module/SCR domain  
ENSGALP00000041475   0.0000000000000848   54-114   Complement control module/SCR domain  
  0.000000000012   120-175   Complement control module/SCR domain  
ENSGALP00000041629   1.95e-19   280-352   Complement control module/SCR domain  
  7.47e-19   154-226   Complement control module/SCR domain  
  3.61e-16   336-401   Complement control module/SCR domain  
  0.00000000000000486   215-291   Complement control module/SCR domain  
  0.000000000000275   464-520   Complement control module/SCR domain  
  0.000000000000524   399-461   Complement control module/SCR domain  
  0.00000000000275   90-164   Complement control module/SCR domain  
ENSGALP00000041805   1.39e-18   88-159   Complement control module/SCR domain  
  3.89e-16   214-277   Complement control module/SCR domain  
  0.00000000000000473   148-215   Complement control module/SCR domain  
  0.0000000000135   23-85   Complement control module/SCR domain  
  0.00000000222   348-403   Complement control module/SCR domain  
  0.00000153   281-339   Complement control module/SCR domain  
ENSGALP00000042156   0.000000000167   30-92   Complement control module/SCR domain  
 
Weak hits:
ENSGALP00000003918   0.0401   88-143   Complement control module/SCR domain  
ENSGALP00000042033   0.034   98-134   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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