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  Home > Genomes > Mus musculus 63_37 (longest transcript per gene) > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Mus musculus 63_37 (longest transcript per gene)

Assignment details

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Mus musculus 63_37 (longest transcript per gene) (Duplicate) has 294 significant domains in 55 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000049   9.15e-21   264-345   Complement control module/SCR domain  
  1.67e-16   83-148   Complement control module/SCR domain  
  0.0000000000000197   205-267   Complement control module/SCR domain  
  0.0000000000001   140-214   Complement control module/SCR domain  
  0.0000000000101   22-93   Complement control module/SCR domain  
ENSMUSP00000002412   0.00000000000136   1165-1223   Complement control module/SCR domain  
ENSMUSP00000021005   0.00000000334   729-784   Complement control module/SCR domain  
ENSMUSP00000023965   7.6e-22   273-341   Complement control module/SCR domain  
  0.0000000000000584   153-211   Complement control module/SCR domain  
  0.00000000000032   214-271   Complement control module/SCR domain  
  0.00000000498   90-147   Complement control module/SCR domain  
  0.00000189   28-92   Complement control module/SCR domain  
ENSMUSP00000025338   0.00000000208   101-157   Complement control module/SCR domain  
  0.00000375   54-101   Complement control module/SCR domain  
ENSMUSP00000027615   3.67e-20   454-533   Complement control module/SCR domain  
  1.19e-19   582-665   Complement control module/SCR domain  
  0.0000000000000315   207-269   Complement control module/SCR domain  
  0.000000000000157   334-390   Complement control module/SCR domain  
  0.000000000000472   397-456   Complement control module/SCR domain  
  0.00000000000473   274-328   Complement control module/SCR domain  
  0.0000000000223   523-579   Complement control module/SCR domain  
  0.00000000262   155-215   Complement control module/SCR domain  
  0.000000315   92-149   Complement control module/SCR domain  
  0.00000433   25-93   Complement control module/SCR domain  
ENSMUSP00000027650   6.81e-18   223-285   Complement control module/SCR domain  
  1.53e-17   162-234   Complement control module/SCR domain  
  0.0000000000000139   36-102   Complement control module/SCR domain  
  0.000000000144   108-172   Complement control module/SCR domain  
ENSMUSP00000027654   1.31e-17   228-290   Complement control module/SCR domain  
  1.81e-17   167-239   Complement control module/SCR domain  
  0.00000000000000612   41-107   Complement control module/SCR domain  
  0.0000000000236   102-177   Complement control module/SCR domain  
ENSMUSP00000027657   8.36e-18   119-190   Complement control module/SCR domain  
  0.00000000000000153   179-251   Complement control module/SCR domain  
  0.000000000000848   303-363   Complement control module/SCR domain  
  0.00000000000124   240-301   Complement control module/SCR domain  
  0.00000000000723   358-415   Complement control module/SCR domain  
  0.00000000378   58-124   Complement control module/SCR domain  
ENSMUSP00000027874   0.00000000000000167   436-506   Complement control module/SCR domain  
  0.00000000000000751   250-316   Complement control module/SCR domain  
  0.0000000000000153   310-384   Complement control module/SCR domain  
  0.0000000000000167   373-447   Complement control module/SCR domain  
  0.000000000000208   496-557   Complement control module/SCR domain  
  0.00000000000264   187-254   Complement control module/SCR domain  
ENSMUSP00000027918   4.99e-17   144-216   Complement control module/SCR domain  
  7.78e-16   205-273   Complement control module/SCR domain  
  0.000000000000153   279-345   Complement control module/SCR domain  
  0.0000000000222   339-398   Complement control module/SCR domain  
  0.0000000000783   83-148   Complement control module/SCR domain  
ENSMUSP00000028111   0.000000000351   120-180   Complement control module/SCR domain  
  0.00000034   23-77   Complement control module/SCR domain  
ENSMUSP00000028612   0.000000000000639   280-350   Complement control module/SCR domain  
ENSMUSP00000028864   2.5e-16   79-148   Complement control module/SCR domain  
ENSMUSP00000032835   0.0000000000107   2047-2107   Complement control module/SCR domain  
ENSMUSP00000032921   0.00000000000000524   289-351   Complement control module/SCR domain  
  0.000000000000144   643-701   Complement control module/SCR domain  
  0.000000000000222   703-764   Complement control module/SCR domain  
  0.00000000000433   771-829   Complement control module/SCR domain  
  0.0000000243   465-530   Complement control module/SCR domain  
ENSMUSP00000033606   0.00000000000000514   160-222   Complement control module/SCR domain  
  0.0000000000000208   307-367   Complement control module/SCR domain  
  0.0000000278   122-170   Complement control module/SCR domain  
ENSMUSP00000045443   7.23e-16   95-167   Complement control module/SCR domain  
  0.0000000000000057   157-219   Complement control module/SCR domain  
  0.00000000000025   218-283   Complement control module/SCR domain  
  0.000000000153   34-100   Complement control module/SCR domain  
  0.000000000655   299-354   Complement control module/SCR domain  
  0.00000000103   455-511   Complement control module/SCR domain  
  0.00000000341   370-413   Complement control module/SCR domain  
ENSMUSP00000045856   3.34e-19   2828-2897   Complement control module/SCR domain  
  8.5e-19   2143-2212   Complement control module/SCR domain  
  2.7e-18   1960-2028   Complement control module/SCR domain  
  3.34e-18   1844-1913   Complement control module/SCR domain  
  4.59e-18   3235-3304   Complement control module/SCR domain  
  5e-18   1786-1855   Complement control module/SCR domain  
  1.13e-17   2378-2448   Complement control module/SCR domain  
  2.22e-17   2770-2839   Complement control module/SCR domain  
  8.06e-17   2886-2955   Complement control module/SCR domain  
  8.9e-17   2263-2326   Complement control module/SCR domain  
  1.81e-16   3059-3126   Complement control module/SCR domain  
  2.7e-16   2553-2620   Complement control module/SCR domain  
  3.64e-16   1681-1744   Complement control module/SCR domain  
  8.34e-16   2437-2506   Complement control module/SCR domain  
  0.00000000000000167   1902-1968   Complement control module/SCR domain  
  0.00000000000000324   3412-3471   Complement control module/SCR domain  
  0.00000000000000375   2670-2723   Complement control module/SCR domain  
  0.00000000000000403   2713-2775   Complement control module/SCR domain  
  0.00000000000000796   2496-2558   Complement control module/SCR domain  
  0.0000000000000136   3294-3359   Complement control module/SCR domain  
  0.0000000000000514   438-504   Complement control module/SCR domain  
  0.00000000000025   2945-3009   Complement control module/SCR domain  
  0.000000000000556   1627-1693   Complement control module/SCR domain  
  0.00000000000153   377-448   Complement control module/SCR domain  
  0.00000000000236   3117-3180   Complement control module/SCR domain  
  0.00000000000445   3353-3421   Complement control module/SCR domain  
  0.00000000000514   2197-2255   Complement control module/SCR domain  
  0.00000000000584   2017-2085   Complement control module/SCR domain  
  0.0000000000473   2321-2389   Complement control module/SCR domain  
  0.0000000000737   3004-3068   Complement control module/SCR domain  
  0.000000000751   3177-3241   Complement control module/SCR domain  
  0.000000000862   2082-2148   Complement control module/SCR domain  
  0.00000133   497-559   Complement control module/SCR domain  
  0.00222   727-787   Complement control module/SCR domain  
ENSMUSP00000047926   0.0000000000000195   114-175   Complement control module/SCR domain  
  0.0000000000000514   261-319   Complement control module/SCR domain  
  0.000000000667   77-129   Complement control module/SCR domain  
ENSMUSP00000048201   0.000000000000122   182-252   Complement control module/SCR domain  
  0.0000000000431   242-302   Complement control module/SCR domain  
ENSMUSP00000049729   0.00000000000000625   366-435   Complement control module/SCR domain  
  0.0000000000000417   300-369   Complement control module/SCR domain  
ENSMUSP00000050832   0.00000000000358   696-765   Complement control module/SCR domain  
ENSMUSP00000061423   0.00000000000862   30-93   Complement control module/SCR domain  
ENSMUSP00000063707   0.000000000000459   375-454   Complement control module/SCR domain  
  0.00000000000167   307-378   Complement control module/SCR domain  
ENSMUSP00000073724   3.51e-18   1609-1677   Complement control module/SCR domain  
  3.91e-17   1666-1733   Complement control module/SCR domain  
  0.00000000000000153   1550-1615   Complement control module/SCR domain  
  0.00000000000000229   1424-1491   Complement control module/SCR domain  
  0.00000000000000556   1017-1085   Complement control module/SCR domain  
  0.00000000000000945   1361-1434   Complement control module/SCR domain  
  0.0000000000000167   844-906   Complement control module/SCR domain  
  0.000000000000032   145-208   Complement control module/SCR domain  
  0.000000000000114   320-383   Complement control module/SCR domain  
  0.000000000000148   493-560   Complement control module/SCR domain  
  0.00000000000089   1187-1251   Complement control module/SCR domain  
  0.00000000000389   670-733   Complement control module/SCR domain  
  0.0000000000181   1495-1557   Complement control module/SCR domain  
ENSMUSP00000074175   0.000000000000459   374-453   Complement control module/SCR domain  
  0.000000000000598   306-377   Complement control module/SCR domain  
ENSMUSP00000074436   0.00000000229   33-95   Complement control module/SCR domain  
ENSMUSP00000074847   0.0000000000000127   685-750   Complement control module/SCR domain  
  0.000000000000695   812-871   Complement control module/SCR domain  
  0.000000000001   744-806   Complement control module/SCR domain  
  0.0000000000126   332-393   Complement control module/SCR domain  
  0.000000000823   507-571   Complement control module/SCR domain  
ENSMUSP00000076632   0.000000000000347   365-435   Complement control module/SCR domain  
  0.0000000000612   307-368   Complement control module/SCR domain  
ENSMUSP00000077878   0.0000000000000695   35-99   Complement control module/SCR domain  
ENSMUSP00000080751   8.63e-20   2679-2747   Complement control module/SCR domain  
  7.56e-18   2736-2805   Complement control module/SCR domain  
  1.28e-17   2919-2987   Complement control module/SCR domain  
  4.59e-17   3035-3100   Complement control module/SCR domain  
  5.7e-17   2794-2868   Complement control module/SCR domain  
  2.7e-16   3095-3164   Complement control module/SCR domain  
  7.92e-16   2976-3046   Complement control module/SCR domain  
  0.00000000000000153   2493-2560   Complement control module/SCR domain  
  0.0000000000000032   3215-3283   Complement control module/SCR domain  
  0.0000000000000082   2851-2912   Complement control module/SCR domain  
  0.00000000000000985   1390-1454   Complement control module/SCR domain  
  0.0000000000000139   527-590   Complement control module/SCR domain  
  0.0000000000000153   3153-3210   Complement control module/SCR domain  
  0.0000000000000236   697-765   Complement control module/SCR domain  
  0.0000000000000236   1215-1283   Complement control module/SCR domain  
  0.0000000000000528   1564-1629   Complement control module/SCR domain  
  0.0000000000000653   2621-2683   Complement control module/SCR domain  
  0.000000000000103   348-420   Complement control module/SCR domain  
  0.000000000000108   1740-1803   Complement control module/SCR domain  
  0.000000000000116   2431-2504   Complement control module/SCR domain  
  0.000000000000119   2086-2155   Complement control module/SCR domain  
  0.000000000000181   872-932   Complement control module/SCR domain  
  0.000000000000347   1914-1979   Complement control module/SCR domain  
  0.00000000000189   144-205   Complement control module/SCR domain  
  0.00000000000472   2257-2321   Complement control module/SCR domain  
  0.0000000000202   1045-1105   Complement control module/SCR domain  
  0.0000000000903   2575-2631   Complement control module/SCR domain  
  0.0000000000973   3274-3331   Complement control module/SCR domain  
ENSMUSP00000080938   1.53e-16   526-595   Complement control module/SCR domain  
  1.67e-16   154-225   Complement control module/SCR domain  
  2.92e-16   716-778   Complement control module/SCR domain  
  0.00000000000000167   275-343   Complement control module/SCR domain  
  0.00000000000000292   850-915   Complement control module/SCR domain  
  0.00000000000000473   351-420   Complement control module/SCR domain  
  0.00000000000000648   411-473   Complement control module/SCR domain  
  0.0000000000000792   601-664   Complement control module/SCR domain  
  0.000000000000139   904-968   Complement control module/SCR domain  
  0.000000000000306   215-286   Complement control module/SCR domain  
  0.000000000000431   785-844   Complement control module/SCR domain  
  0.00000000000126   88-148   Complement control module/SCR domain  
  0.00000000000189   21-84   Complement control module/SCR domain  
  0.00000222   481-537   Complement control module/SCR domain  
  0.00000236   680-727   Complement control module/SCR domain  
ENSMUSP00000082340   0.000000000123   62-124   Complement control module/SCR domain  
ENSMUSP00000082873   0.000000000000403   180-239   Complement control module/SCR domain  
  0.000000000283   242-302   Complement control module/SCR domain  
  0.000000000334   56-118   Complement control module/SCR domain  
  0.00000013   117-178   Complement control module/SCR domain  
ENSMUSP00000087327   0.0000000000000681   305-375   Complement control module/SCR domain  
ENSMUSP00000088491   0.000000000653   789-848   Complement control module/SCR domain  
ENSMUSP00000091532   0.00000000000000594   707-772   Complement control module/SCR domain  
  0.000000000000852   766-828   Complement control module/SCR domain  
  0.00000000000445   353-418   Complement control module/SCR domain  
  0.0000000000236   833-893   Complement control module/SCR domain  
  0.000000000195   529-593   Complement control module/SCR domain  
ENSMUSP00000093197   3.61e-16   720-777   Complement control module/SCR domain  
ENSMUSP00000098235   2.97e-20   3171-3242   Complement control module/SCR domain  
  4.18e-19   2816-2884   Complement control module/SCR domain  
  3.51e-18   2873-2941   Complement control module/SCR domain  
  6.12e-18   3112-3182   Complement control module/SCR domain  
  7.02e-18   2932-2998   Complement control module/SCR domain  
  8.9e-18   3055-3123   Complement control module/SCR domain  
  4.18e-16   3231-3300   Complement control module/SCR domain  
  9.73e-16   2630-2697   Complement control module/SCR domain  
  0.00000000000000189   2223-2292   Complement control module/SCR domain  
  0.00000000000000195   485-556   Complement control module/SCR domain  
  0.00000000000000417   2757-2820   Complement control module/SCR domain  
  0.00000000000000473   3351-3419   Complement control module/SCR domain  
  0.00000000000000625   2987-3048   Complement control module/SCR domain  
  0.00000000000000792   3290-3346   Complement control module/SCR domain  
  0.0000000000000195   2568-2641   Complement control module/SCR domain  
  0.0000000000000378   1009-1069   Complement control module/SCR domain  
  0.0000000000000445   2051-2113   Complement control module/SCR domain  
  0.0000000000000499   1527-1591   Complement control module/SCR domain  
  0.0000000000000584   1877-1943   Complement control module/SCR domain  
  0.00000000000013   1700-1765   Complement control module/SCR domain  
  0.000000000000139   663-722   Complement control module/SCR domain  
  0.000000000000431   1182-1244   Complement control module/SCR domain  
  0.000000000000513   177-238   Complement control module/SCR domain  
  0.0000000000013   1353-1415   Complement control module/SCR domain  
  0.00000000000264   3410-3468   Complement control module/SCR domain  
  0.00000000000337   834-902   Complement control module/SCR domain  
  0.0000000000117   2702-2762   Complement control module/SCR domain  
  0.0000000000702   2394-2457   Complement control module/SCR domain  
ENSMUSP00000099923   0.000000000292   1435-1499   Complement control module/SCR domain  
  0.00000000264   1372-1444   Complement control module/SCR domain  
  0.0000000459   1311-1376   Complement control module/SCR domain  
  0.00000334   1241-1314   Complement control module/SCR domain  
ENSMUSP00000105173   0.0000000000876   3252-3310   Complement control module/SCR domain  
ENSMUSP00000107607   7.45e-19   1190-1252   Complement control module/SCR domain  
  0.0000000000000121   162-233   Complement control module/SCR domain  
  0.00000000000032   1132-1194   Complement control module/SCR domain  
  0.00000000000126   103-164   Complement control module/SCR domain  
  0.0000000000013   1005-1067   Complement control module/SCR domain  
  0.00000000000144   953-1021   Complement control module/SCR domain  
  0.00000000000446   1064-1126   Complement control module/SCR domain  
  0.0000000000175   705-761   Complement control module/SCR domain  
  0.0000000000197   644-701   Complement control module/SCR domain  
  0.000000000367   885-957   Complement control module/SCR domain  
  0.000000000747   824-879   Complement control module/SCR domain  
  0.00000000119   223-282   Complement control module/SCR domain  
  0.00000000249   280-343   Complement control module/SCR domain  
  0.00000000537   411-468   Complement control module/SCR domain  
  0.00000000653   39-107   Complement control module/SCR domain  
  0.0000000131   580-641   Complement control module/SCR domain  
  0.000000021   473-530   Complement control module/SCR domain  
  0.00000128   526-590   Complement control module/SCR domain  
  0.00243   343-407   Complement control module/SCR domain  
  0.00297   783-820   Complement control module/SCR domain  
ENSMUSP00000107620   5.9e-17   817-878   Complement control module/SCR domain  
  0.00000000000031   691-753   Complement control module/SCR domain  
  0.000000000000764   759-821   Complement control module/SCR domain  
  0.000000000000931   639-707   Complement control module/SCR domain  
  0.00000000000931   391-447   Complement control module/SCR domain  
  0.0000000000131   330-387   Complement control module/SCR domain  
  0.000000000367   509-565   Complement control module/SCR domain  
  0.00000000262   265-326   Complement control module/SCR domain  
  0.00000000275   95-153   Complement control module/SCR domain  
  0.00000000616   571-643   Complement control module/SCR domain  
  0.00000000826   157-213   Complement control module/SCR domain  
  0.000000459   211-275   Complement control module/SCR domain  
  0.000432   465-506   Complement control module/SCR domain  
  0.00243   27-87   Complement control module/SCR domain  
ENSMUSP00000117677   0.0000000000000834   610-671   Complement control module/SCR domain  
  0.00000000000378   676-732   Complement control module/SCR domain  
  0.000000000431   88-149   Complement control module/SCR domain  
  0.00000612   556-596   Complement control module/SCR domain  
  0.00019   21-71   Complement control module/SCR domain  
ENSMUSP00000119977   0.0000000000000431   97-158   Complement control module/SCR domain  
  0.00000000000208   163-219   Complement control module/SCR domain  
  0.00000334   43-83   Complement control module/SCR domain  
ENSMUSP00000123924   1.95e-17   262-328   Complement control module/SCR domain  
  2.08e-16   324-391   Complement control module/SCR domain  
  8.62e-16   200-264   Complement control module/SCR domain  
  0.0000000000000025   441-507   Complement control module/SCR domain  
  0.00000000000000334   379-445   Complement control module/SCR domain  
  0.00000000000000445   503-568   Complement control module/SCR domain  
  0.000000000000124   635-700   Complement control module/SCR domain  
  0.00000000000025   580-645   Complement control module/SCR domain  
ENSMUSP00000123931   0.00000000000000306   107-182   Complement control module/SCR domain  
  0.0000000000000115   234-296   Complement control module/SCR domain  
  0.000000000000347   166-236   Complement control module/SCR domain  
  0.00000000747   45-99   Complement control module/SCR domain  
ENSMUSP00000124022   0.000000000167   1522-1596   Complement control module/SCR domain  
  0.00000862   1588-1645   Complement control module/SCR domain  
  0.0000653   1481-1528   Complement control module/SCR domain  
  0.00109   1408-1465   Complement control module/SCR domain  
ENSMUSP00000125493   0.000000000000181   365-435   Complement control module/SCR domain  
  0.0000000000695   306-368   Complement control module/SCR domain  
ENSMUSP00000125693   0.0000000000364   644-707   Complement control module/SCR domain  
  0.000000256   699-754   Complement control module/SCR domain  
ENSMUSP00000125869   0.0000000000000236   252-317   Complement control module/SCR domain  
  0.0000000000000598   197-263   Complement control module/SCR domain  
ENSMUSP00000125999   4.19e-20   448-510   Complement control module/SCR domain  
  0.000000000000297   390-452   Complement control module/SCR domain  
  0.000000000408   81-144   Complement control module/SCR domain  
  0.000000000996   30-89   Complement control module/SCR domain  
  0.00000000157   212-269   Complement control module/SCR domain  
  0.0000000301   273-331   Complement control module/SCR domain  
  0.00000197   326-385   Complement control module/SCR domain  
  0.000944   136-203   Complement control module/SCR domain  
ENSMUSP00000127697   0.000000000000025   81-137   Complement control module/SCR domain  
  0.000000000000445   20-76   Complement control module/SCR domain  
  0.0216   2-17   Complement control module/SCR domain  
ENSMUSP00000128826   0.000000679   135-193   Complement control module/SCR domain  
 
Weak hits:
ENSMUSP00000042883   0.000275   185-232   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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