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  Home > Genomes > Tetraodon nigroviridis 76_8 > FnI-like domain domains


FnI-like domain superfamily domain assignments
in
Tetraodon nigroviridis 76_8

Assignment details

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Tetraodon nigroviridis 76_8 has 190 significant domains in 59 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTNIP00000000053   0.000000000000439   36-95   VWC domain  
ENSTNIP00000000206   0.00000000000282   35-93   VWC domain  
ENSTNIP00000000391   0.00000000000000654   2372-2415   Fibronectin type I module  
  0.0000000000000157   556-602   Fibronectin type I module  
  0.000000000000196   226-269   Fibronectin type I module  
  0.000000000000236   90-135   Fibronectin type I module  
  0.00000000000034   514-558   Fibronectin type I module  
  0.00000000000183   470-508   Fibronectin type I module  
  0.00000000000393   2327-2370   Fibronectin type I module  
  0.0000000000222   138-178   Fibronectin type I module  
  0.000000000393   181-225   Fibronectin type I module  
  0.000000000471   47-86   Fibronectin type I module  
  0.000000000807   303-341   Fibronectin type I module  
  0.00000000314   2414-2458   Fibronectin type I module  
ENSTNIP00000000965   0.0000000000188   29-90   VWC domain  
ENSTNIP00000000976   0.00000000000000398   33-94   VWC domain  
ENSTNIP00000001079   0.0000000000241   1376-1434   VWC domain  
ENSTNIP00000001174   0.000000000000251   37-95   VWC domain  
ENSTNIP00000001250   0.000000000000345   37-96   VWC domain  
ENSTNIP00000001260   0.000000146   20-83   VWC domain  
ENSTNIP00000001433   0.0000000000000607   1076-1148   VWC domain  
  0.000000000000889   890-957   VWC domain  
  0.00000000000356   422-490   VWC domain  
  0.00000000000732   366-429   VWC domain  
  0.00000000000795   190-249   VWC domain  
  0.0000000000105   540-605   VWC domain  
  0.0000000000146   834-897   VWC domain  
  0.000000000188   302-371   VWC domain  
  0.000000000209   660-723   VWC domain  
  0.000000000251   242-309   VWC domain  
  0.00000000146   129-189   VWC domain  
  0.00000000251   717-781   VWC domain  
  0.00000000429   954-1023   VWC domain  
  0.0000000157   774-835   Fibronectin type I module  
  0.00000023   481-542   Fibronectin type I module  
  0.000000534   610-665   VWC domain  
  0.0000105   76-128   VWC domain  
  0.0000115   1039-1084   VWC domain  
  0.0868   34-70   VWC domain  
ENSTNIP00000001665   0.0000000000000262   697-757   VWC domain  
  0.000000000764   865-930   VWC domain  
  0.0000000105   775-845   VWC domain  
  0.0000000502   47-124   VWC domain  
ENSTNIP00000001679   0.000000000000356   37-96   VWC domain  
ENSTNIP00000001682   0.0000000000000045   33-93   VWC domain  
ENSTNIP00000001810   0.0000000000000115   30-90   VWC domain  
ENSTNIP00000001860   0.00000000000000654   2371-2414   Fibronectin type I module  
  0.0000000000000157   561-607   Fibronectin type I module  
  0.000000000000196   231-274   Fibronectin type I module  
  0.000000000000269   95-140   Fibronectin type I module  
  0.00000000000034   519-563   Fibronectin type I module  
  0.00000000000183   475-513   Fibronectin type I module  
  0.00000000000449   2326-2369   Fibronectin type I module  
  0.0000000000222   143-183   Fibronectin type I module  
  0.000000000393   186-230   Fibronectin type I module  
  0.000000000792   308-346   Fibronectin type I module  
  0.00000000236   54-91   Fibronectin type I module  
  0.00000000314   2413-2457   Fibronectin type I module  
ENSTNIP00000002362   0.000000000000345   34-93   VWC domain  
ENSTNIP00000002440   0.000000000000345   34-93   VWC domain  
ENSTNIP00000002526   0.0000000000188   29-90   VWC domain  
ENSTNIP00000002662   0.000000000000439   34-93   VWC domain  
ENSTNIP00000002716   0.00000000000000199   31-91   VWC domain  
ENSTNIP00000002818   0.00000000000000262   31-91   VWC domain  
ENSTNIP00000003135   0.0000000931   369-432   VWC domain  
  0.00000262   89-153   VWC domain  
ENSTNIP00000003879   9.94e-16   232-296   VWC domain  
  0.00000000000262   89-156   VWC domain  
  0.0000000000144   10-76   VWC domain  
ENSTNIP00000005224   0.00000000000126   7-65   VWC domain  
ENSTNIP00000007325   0.000000000188   103-161   VWC domain  
  0.00000000471   39-100   Fibronectin type I module  
ENSTNIP00000009197   0.000000691   115-187   Fibronectin type I module  
ENSTNIP00000009281   9.1e-16   53-121   VWC domain  
  0.00000282   1-59   VWC domain  
ENSTNIP00000011125   0.0000000000241   1375-1433   VWC domain  
ENSTNIP00000012351   0.0000000000000434   545-590   Fibronectin type I module  
  0.000000000000111   226-270   Fibronectin type I module  
  0.000000000000222   90-134   Fibronectin type I module  
  0.000000000000314   504-547   Fibronectin type I module  
  0.000000000000314   2092-2135   Fibronectin type I module  
  0.00000000000122   457-496   Fibronectin type I module  
  0.00000000000183   179-224   Fibronectin type I module  
  0.00000000000523   2047-2090   Fibronectin type I module  
  0.00000000000942   137-177   Fibronectin type I module  
  0.0000000000157   2135-2176   Fibronectin type I module  
  0.000000000183   291-329   Fibronectin type I module  
  0.0000000275   48-85   Fibronectin type I module  
ENSTNIP00000012352   0.0000000000000449   550-595   Fibronectin type I module  
  0.000000000000116   226-270   Fibronectin type I module  
  0.000000000000269   90-134   Fibronectin type I module  
  0.000000000000327   2191-2234   Fibronectin type I module  
  0.000000000000329   509-552   Fibronectin type I module  
  0.00000000000127   462-501   Fibronectin type I module  
  0.00000000000196   179-224   Fibronectin type I module  
  0.00000000000553   2146-2189   Fibronectin type I module  
  0.00000000000994   137-177   Fibronectin type I module  
  0.000000000017   2234-2275   Fibronectin type I module  
  0.000000000183   296-334   Fibronectin type I module  
  0.0000000288   48-85   Fibronectin type I module  
ENSTNIP00000012484   0.000000000136   268-334   VWC domain  
  0.000000023   683-755   VWC domain  
  0.000126   335-393   VWC domain  
  0.0335   766-803   VWC domain  
ENSTNIP00000012506   0.000000105   89-161   VWC domain  
ENSTNIP00000012940   0.00000000000194   89-156   VWC domain  
  0.00000000001   10-76   VWC domain  
ENSTNIP00000013402   0.00000345   323-369   VWC domain  
  0.00921   766-838   VWC domain  
ENSTNIP00000013524   0.0000000000199   44-102   VWC domain  
ENSTNIP00000014103   0.00000000000000262   31-91   VWC domain  
ENSTNIP00000015175   0.000000000000126   314-371   VWC domain  
ENSTNIP00000015351   0.0000023   864-920   VWC domain  
ENSTNIP00000015410   0.000000011   66-139   Fibronectin type I module  
ENSTNIP00000015559   0.000000000000345   34-93   VWC domain  
ENSTNIP00000015969   0.0000000000000345   116-183   VWC domain  
  0.000000000785   238-314   VWC domain  
  0.000000889   55-122   VWC domain  
  0.00000199   193-247   VWC domain  
  0.0000104   18-62   VWC domain  
ENSTNIP00000016941   0.00000575   227-270   VWC domain  
ENSTNIP00000017018   0.00000000199   61-128   VWC domain  
  0.00293   132-173   Fibronectin type I module  
  0.0534   8-66   Fibronectin type I module  
ENSTNIP00000017311   0.0000000000000262   693-753   VWC domain  
  0.00000000241   861-925   VWC domain  
  0.0000000105   771-841   VWC domain  
  0.0000000178   42-119   VWC domain  
ENSTNIP00000017459   0.00000000000000628   30-90   VWC domain  
ENSTNIP00000019001   0.0000000009   42-85   Fibronectin type I module  
ENSTNIP00000019002   0.000000000942   62-105   Fibronectin type I module  
ENSTNIP00000019068   0.000000000429   270-334   VWC domain  
  0.000000000628   691-763   VWC domain  
  0.00282   335-400   VWC domain  
ENSTNIP00000019536   0.00000000046   57-127   VWC domain  
  0.0105   130-170   Fibronectin type I module  
ENSTNIP00000019695   0.00000157   315-357   VWC domain  
ENSTNIP00000019751   0.00000199   853-911   VWC domain  
ENSTNIP00000020181   0.00000000000000654   2378-2421   Fibronectin type I module  
  0.0000000000000157   563-609   Fibronectin type I module  
  0.000000000000209   233-276   Fibronectin type I module  
  0.000000000000236   97-142   Fibronectin type I module  
  0.00000000000034   521-565   Fibronectin type I module  
  0.00000000000183   477-515   Fibronectin type I module  
  0.00000000000449   2333-2376   Fibronectin type I module  
  0.0000000000236   145-185   Fibronectin type I module  
  0.000000000393   188-232   Fibronectin type I module  
  0.000000000807   310-348   Fibronectin type I module  
  0.00000000105   54-93   Fibronectin type I module  
  0.00000000314   2420-2464   Fibronectin type I module  
ENSTNIP00000020182   0.00000000000000628   2284-2327   Fibronectin type I module  
  0.0000000000000157   563-609   Fibronectin type I module  
  0.000000000000196   233-276   Fibronectin type I module  
  0.000000000000222   97-142   Fibronectin type I module  
  0.000000000000327   521-565   Fibronectin type I module  
  0.00000000000183   477-515   Fibronectin type I module  
  0.00000000000434   2239-2282   Fibronectin type I module  
  0.0000000000222   145-185   Fibronectin type I module  
  0.000000000379   188-232   Fibronectin type I module  
  0.000000000778   310-348   Fibronectin type I module  
  0.00000000101   54-93   Fibronectin type I module  
  0.00000000299   2326-2370   Fibronectin type I module  
ENSTNIP00000020582   0.000000000000146   319-377   VWC domain  
ENSTNIP00000020594   0.00000000000596   632-690   VWC domain  
  0.00000000000952   352-409   VWC domain  
  0.0000000000126   270-342   VWC domain  
  0.0000000000575   705-761   VWC domain  
  0.00000000157   557-617   VWC domain  
ENSTNIP00000020595   0.00000000000638   677-735   VWC domain  
  0.00000000000816   397-454   VWC domain  
  0.0000000000167   315-387   VWC domain  
  0.0000000000617   750-806   VWC domain  
  0.00000000167   602-662   VWC domain  
ENSTNIP00000021252   0.00000000575   98-163   Fibronectin type I module  
ENSTNIP00000022406   0.0000000000000513   1467-1532   VWC domain  
  0.000000000000209   644-711   VWC domain  
  0.000000000000502   1526-1593   VWC domain  
  0.00000000000188   1843-1909   VWC domain  
  0.00000000000199   1585-1652   VWC domain  
  0.00000000000481   883-951   VWC domain  
  0.0000000000126   827-890   VWC domain  
  0.0000000000157   1001-1066   VWC domain  
  0.0000000000356   585-653   VWC domain  
  0.0000000000596   702-770   VWC domain  
  0.000000000272   763-832   VWC domain  
  0.000000000356   1121-1184   VWC domain  
  0.000000000889   1350-1418   VWC domain  
  0.00000000262   1773-1845   VWC domain  
  0.00000000418   1178-1242   VWC domain  
  0.00000000847   1295-1345   VWC domain  
  0.0000000209   1235-1296   Fibronectin type I module  
  0.0000000701   1418-1473   VWC domain  
  0.000000314   942-1003   Fibronectin type I module  
  0.000000847   1649-1702   VWC domain  
  0.000000879   1071-1126   VWC domain  
  0.0000167   1735-1783   VWC domain  
  0.000022   539-592   VWC domain  
  0.00628   302-335   VWC domain  
ENSTNIP00000022424   0.00000324   2553-2634   Fibronectin type I module  
  0.000366   796-836   VWC domain  
  0.0942   679-712   VWC domain  
 
Weak hits:
ENSTNIP00000001016   0.000251   492-533   VWC domain  
  0.000638   138-178   Fibronectin type I module  
ENSTNIP00000004394   0.000223   100-139   Fibronectin type I module  
ENSTNIP00000004825   0.00022   98-137   Fibronectin type I module  
ENSTNIP00000005090   0.00126   231-282   Fibronectin type I module  
ENSTNIP00000006580   0.000136   317-357   Fibronectin type I module  
  0.000303   774-824   Fibronectin type I module  
  0.00157   1683-1765   VWC domain  
ENSTNIP00000006867   0.00167   607-654   VWC domain  
ENSTNIP00000007660   0.00596   713-796   VWC domain  
ENSTNIP00000008802   0.00022   93-132   Fibronectin type I module  
ENSTNIP00000009453   0.000994   537-596   VWC domain  
  0.022   763-793   VWC domain  
ENSTNIP00000011630   0.000167   929-992   VWC domain  
ENSTNIP00000011951   0.000418   263-328   VWC domain  
ENSTNIP00000012745   0.00837   227-268   VWC domain  
ENSTNIP00000021977   0.000178   363-410   Fibronectin type I module  
  0.000262   837-877   VWC domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   105027 105027
No Yes Homo sapiens 76_38 Human 383 107
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 125 45
No Yes Pongo abelii 76_2 Sumatran orangutan 89 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 32
No Yes Papio anubis 76 Olive baboon 98 30
No Yes Macaca mulatta 76_1 Rhesus monkey 238 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 257 100
No Yes Otolemur garnettii 76_3 Small-eared galago 79 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 76_5.0 Norway rat 125 42
No Yes Mus musculus 76_38 House mouse 258 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 106 38
No Yes Ochotona princeps 76 American pika 63 25
No Yes Tupaia belangeri 76 Northern tree shrew 42 23
No Yes Sus scrofa 76_10.2 Pig 144 43
No Yes Bos taurus 76_3.1 Cattle 154 37
No Yes Ovis aries 76_3.1 Sheep 113 39
No Yes Vicugna pacos 76_1 Alpaca 44 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 76_1 Giant panda 110 42
No Yes Canis familiaris 76_3.1 Dog 144 52
No Yes Felis catus 76_6.2 Domestic cat 101 37
No Yes Equus caballus 76_2 Horse 146 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 109 33
No Yes Pteropus vampyrus 76_1 Large flying fox 80 32
No Yes Sorex araneus 76_1 European shrew 36 20
No Yes Erinaceus europaeus 76 Western European hedgehog 39 18
No Yes Procavia capensis 76_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 76_3 African savanna elephant 110 42
No Yes Echinops telfairi 76 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 95 44
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 82 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 41
No Yes Saccoglossus kowalevskii v3.0   266 96
No Yes Petromyzon marinus 76_7.0 Sea lamprey 47 24
No Yes Meleagris gallopavo 76_2 Turkey 65 39
No Yes Gallus gallus 76_4 Chicken 82 30
No Yes Anas platyrhynchos 76_1.0 Mallard 65 31
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 68 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 76 37
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 70 35
No Yes Anolis carolinensis 76_2.0 Green anole 96 36
No Yes Xenopus laevis African clawed frog 225 64
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 162 50
No Yes Latimeria chalumnae 76_1 Coelacanth 114 49
No Yes Lepisosteus oculatus 76 Spotted gar 174 58
No Yes Gadus morhua 76_1 Atlantic cod 84 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 190 59
No Yes Takifugu rubripes 76_4 Torafugu 363 145
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 55
No Yes Oryzias latipes 76_1 Japanese medaka 110 48
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 106 39
No Yes Poecilia formosa 76 Amazon molly 113 45
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 55
No Yes Astyanax mexicanus 76 Mexican tetra 105 46
No Yes Danio rerio 76_9 Zebrafish 195 80
No Yes Oikopleura dioica   11 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 117 45
No Yes Ciona intestinalis 76 Vase tunicate 60 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 124 36
No Yes Adineta vaga   24 5
No Yes Octopus bimaculoides 280   555 83
No Yes Crassostrea gigas 22 Pacific oyster 121 40
No Yes Lottia gigantea Owl limpet 84 33
No Yes Helobdella robusta   7 5
No Yes Capitella sp. I   29 15
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 9
No Yes Heliconius melpomene Postman butterfly 20 7
No Yes Bombyx mori Domestic silkworm 16 10
No Yes Nasonia vitripennis Jewel wasp 27 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 21 8
No Yes Linepithema humile v1.1 Argentine ant 21 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 8
No Yes Atta cephalotes v1.1   22 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 24 8
No Yes Lucilia cuprina Australian sheep blowfly 23 9
No Yes Drosophila grimshawi 1.3   26 13
No Yes Drosophila willistoni 1.3   27 13
No Yes Drosophila pseudoobscura 2.13   23 13
No Yes Drosophila persimilis 1.3   25 11
No Yes Drosophila suzukii   23 9
No Yes Drosophila yakuba 1.3   25 13
No Yes Drosophila simulans 1.3   20 11
No Yes Drosophila sechellia 1.3   25 13
No Yes Drosophila melanogaster 76_5 Fruit fly 51 24
No Yes Drosophila erecta 1.3   27 13
No Yes Drosophila ananassae 1.3   27 14
No Yes Drosophila virilis 1.2   26 12
No Yes Drosophila mojavensis 1.3   28 14
No Yes Megaselia scalaris 22   7 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 29 15
No Yes Anopheles darlingi 22 American malaria mosquito 17 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 11
No Yes Tribolium castaneum 3.0 Red flour beetle 29 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 11
No Yes Acyrthosiphon pisum Pea aphid 18 6
No Yes Rhodnius prolixus 22   29 10
No Yes Daphnia pulex Common water flea 30 18
No Yes Strigamia maritima 22   34 17
No Yes Sarcoptes scabiei   13 5
No Yes Tetranychus urticae Two-spotted spider mite 31 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 9
No Yes Pristionchus pacificus   9 4
No Yes Meloidogyne incognita Southern root-knot nematode 5 3
No Yes Meloidogyne hapla   7 2
No Yes Onchocerca volvulus 22   7 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 2
No Yes Caenorhabditis japonica   7 2
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   7 3
No Yes Caenorhabditis elegans 76_235 Roundworm 31 8
No Yes Caenorhabditis briggsae 2   6 2
No Yes Trichinella spiralis 22   10 5
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 39 21
No Yes Acropora digitifera v1.0   23 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 12
No Yes Hydra vulgaris   10 6
No Yes Amphimedon queenslandica   7 4
No Yes Trichoplax adhaerens   30 4
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 153 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 24 6
No Yes Sorangium cellulosum So0157-2   4 1
No Yes Homo sapiens 75_37 (old version GRC) Human 363 114
No Yes Homo sapiens (NCBI version) Human 201 59
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 95 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 84 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 38
No Yes Pongo abelii 69_2 Sumatran orangutan 73 30
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 79 31
No Yes Macaca mulatta 69_1 Rhesus monkey 73 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 91 36
No Yes Otolemur garnettii 69_3 Small-eared galago 79 28
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 69_3.4 Norway rat 90 34
No Yes Mus musculus 69_38 House mouse 94 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 81 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 69_2 Rabbit 91 34
No Yes Ochotona princeps 69 American pika 63 25
No Yes Tupaia belangeri 69 Northern tree shrew 42 23
No Yes Sus scrofa 69_10.2 Pig 84 29
No Yes Bos taurus 69_3.1 Cattle 92 32
No Yes Vicugna pacos 69_1 Alpaca 44 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 94 37
No Yes Canis familiaris 69_3.1 Dog 101 38
No Yes Felis catus 69 Domestic cat 48 24
No Yes Equus caballus 69_2 Horse 93 33
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 28
No Yes Pteropus vampyrus 69_1 Large flying fox 80 32
No Yes Sorex araneus 69_1 European shrew 36 20
No Yes Erinaceus europaeus 69 Western European hedgehog 39 18
No Yes Procavia capensis 69_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 69_3 African savanna elephant 87 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 47 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 85 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 33
No Yes Ornithorhynchus anatinus 69_5 Platypus 75 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 19
No Yes Meleagris gallopavo 69_2 Turkey 58 32
No Yes Gallus gallus 69_2 Chicken 62 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 66 32
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 32
No Yes Anolis carolinensis 69_2.0 Green anole 92 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 102 39
No Yes Latimeria chalumnae 69_1 Coelacanth 101 42
No Yes Gadus morhua 69_1 Atlantic cod 80 35
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 95 34
No Yes Takifugu rubripes 69_4 Torafugu 97 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 87 40
No Yes Oryzias latipes 69_1 Japanese medaka 91 35
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 106 39
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 105 41
No Yes Danio rerio 69_9 Zebrafish 120 51
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 52 18
No Yes Ciona intestinalis 69 Vase tunicate 49 21
No Yes Drosophila melanogaster 69_5 Fruit fly 26 12
No Yes Caenorhabditis elegans 69_215 Roundworm 7 2
No Yes NCBI 2017_08 genome   52215 16311
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   2925 1172
No Yes Uniprot 2018_03 genome   27002 10540
No Yes Global Ocean Sampling Expedition (GOS)   4 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 9
No Yes Protein Data Bank (all PDB sequenc)   83 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   179 179
No Yes TargetDB (Targets)   39 21
No Yes UniProt viral sequences (Viral)   19 19

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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