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  Home > Genomes > Oryzias latipes 76_1 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Oryzias latipes 76_1

Assignment details

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Oryzias latipes 76_1 has 280 significant domains in 61 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSORLP00000000123   0.00000000000135   2142-2203   Complement control module/SCR domain  
ENSORLP00000000355   0.00000000000000375   708-765   Complement control module/SCR domain  
ENSORLP00000000357   0.0000000000000025   513-570   Complement control module/SCR domain  
ENSORLP00000000950   0.0000000000000153   81-138   Complement control module/SCR domain  
ENSORLP00000001026   0.000000000025   1174-1235   Complement control module/SCR domain  
ENSORLP00000001288   0.000000000542   694-760   Complement control module/SCR domain  
ENSORLP00000001473   0.0000000000000107   428-494   Complement control module/SCR domain  
  0.000000000000347   487-549   Complement control module/SCR domain  
  0.00000000000104   554-614   Complement control module/SCR domain  
  0.0000000000054   72-134   Complement control module/SCR domain  
  0.00000000334   249-313   Complement control module/SCR domain  
ENSORLP00000001474   0.0000000000000275   425-482   Complement control module/SCR domain  
  0.000000000000959   488-548   Complement control module/SCR domain  
  0.00000000000472   71-133   Complement control module/SCR domain  
  0.00000000292   247-311   Complement control module/SCR domain  
ENSORLP00000001614   0.00000000000000653   79-140   Complement control module/SCR domain  
  0.000000000000375   226-284   Complement control module/SCR domain  
  0.000000000403   28-94   Complement control module/SCR domain  
ENSORLP00000004047   2.29e-21   642-713   Complement control module/SCR domain  
  1.35e-18   583-653   Complement control module/SCR domain  
  1.35e-18   398-471   Complement control module/SCR domain  
  2.43e-18   702-771   Complement control module/SCR domain  
  3.2e-18   340-408   Complement control module/SCR domain  
  1.75e-16   279-335   Complement control module/SCR domain  
  4.99e-16   454-515   Complement control module/SCR domain  
  9.17e-16   522-578   Complement control module/SCR domain  
  9.73e-16   220-283   Complement control module/SCR domain  
  0.00000000000000598   823-890   Complement control module/SCR domain  
  0.0000000000000378   90-151   Complement control module/SCR domain  
  0.000000000000107   761-817   Complement control module/SCR domain  
  0.000000000000648   165-231   Complement control module/SCR domain  
  0.00000000000351   882-939   Complement control module/SCR domain  
  0.0000000000167   22-83   Complement control module/SCR domain  
ENSORLP00000005246   0.0000000000000973   562-624   Complement control module/SCR domain  
  0.000222   618-675   Complement control module/SCR domain  
ENSORLP00000006872   2.7e-19   2690-2758   Complement control module/SCR domain  
  1.95e-18   3045-3117   Complement control module/SCR domain  
  2.22e-18   2747-2815   Complement control module/SCR domain  
  3.47e-17   2986-3056   Complement control module/SCR domain  
  6.07e-17   2806-2872   Complement control module/SCR domain  
  1.33e-16   2929-2997   Complement control module/SCR domain  
  0.00000000000000116   3106-3175   Complement control module/SCR domain  
  0.00000000000000292   2861-2922   Complement control module/SCR domain  
  0.00000000000000486   3226-3294   Complement control module/SCR domain  
  0.000000000000012   2479-2546   Complement control module/SCR domain  
  0.0000000000000334   1897-1966   Complement control module/SCR domain  
  0.0000000000000403   506-565   Complement control module/SCR domain  
  0.0000000000000513   1544-1611   Complement control module/SCR domain  
  0.0000000000000528   2417-2490   Complement control module/SCR domain  
  0.0000000000000542   1720-1787   Complement control module/SCR domain  
  0.000000000000057   328-399   Complement control module/SCR domain  
  0.0000000000000944   852-911   Complement control module/SCR domain  
  0.000000000000162   2069-2138   Complement control module/SCR domain  
  0.000000000000167   2601-2662   Complement control module/SCR domain  
  0.000000000000181   2557-2617   Complement control module/SCR domain  
  0.000000000000375   3158-3220   Complement control module/SCR domain  
  0.000000000000648   113-177   Complement control module/SCR domain  
  0.000000000000756   1025-1085   Complement control module/SCR domain  
  0.000000000000764   1370-1434   Complement control module/SCR domain  
  0.000000000000973   677-743   Complement control module/SCR domain  
  0.00000000000236   1196-1258   Complement control module/SCR domain  
  0.00000000000836   2240-2305   Complement control module/SCR domain  
ENSORLP00000006921   2.64e-19   2917-2984   Complement control module/SCR domain  
  5.4e-19   3093-3162   Complement control module/SCR domain  
  1.81e-18   3033-3104   Complement control module/SCR domain  
  1.67e-17   2677-2744   Complement control module/SCR domain  
  2.64e-17   2734-2802   Complement control module/SCR domain  
  0.00000000000000904   3213-3279   Complement control module/SCR domain  
  0.00000000000000987   2618-2681   Complement control module/SCR domain  
  0.0000000000000122   348-419   Complement control module/SCR domain  
  0.0000000000000153   2792-2860   Complement control module/SCR domain  
  0.0000000000000243   1390-1455   Complement control module/SCR domain  
  0.000000000000031   1563-1624   Complement control module/SCR domain  
  0.0000000000000334   2974-3038   Complement control module/SCR domain  
  0.0000000000000347   1911-1973   Complement control module/SCR domain  
  0.0000000000000584   1737-1802   Complement control module/SCR domain  
  0.0000000000000987   1215-1281   Complement control module/SCR domain  
  0.000000000000153   2084-2152   Complement control module/SCR domain  
  0.000000000000189   144-204   Complement control module/SCR domain  
  0.000000000000389   3151-3208   Complement control module/SCR domain  
  0.000000000000472   2492-2558   Complement control module/SCR domain  
  0.00000000000082   526-588   Complement control module/SCR domain  
  0.00000000000162   697-760   Complement control module/SCR domain  
  0.00000000000181   872-932   Complement control module/SCR domain  
  0.0000000000106   2849-2910   Complement control module/SCR domain  
  0.0000000000347   3268-3329   Complement control module/SCR domain  
  0.0000000000445   2254-2318   Complement control module/SCR domain  
  0.0000000001   1045-1108   Complement control module/SCR domain  
  0.000000000222   2562-2624   Complement control module/SCR domain  
ENSORLP00000006922   0.00000000000000526   136-197   Complement control module/SCR domain  
ENSORLP00000007296   0.00000000000000403   87-146   Complement control module/SCR domain  
  0.0000000000032   152-207   Complement control module/SCR domain  
  0.0000000032   33-94   Complement control module/SCR domain  
ENSORLP00000008531   0.000000000806   1403-1465   Complement control module/SCR domain  
  0.00000000272   1208-1284   Complement control module/SCR domain  
  0.00000000459   1342-1411   Complement control module/SCR domain  
  0.00000000903   1281-1347   Complement control module/SCR domain  
ENSORLP00000009462   2.7e-19   2103-2172   Complement control module/SCR domain  
  1.11e-17   2819-2887   Complement control module/SCR domain  
  1.81e-17   2645-2713   Complement control module/SCR domain  
  2.36e-17   1743-1806   Complement control module/SCR domain  
  7.92e-17   2702-2769   Complement control module/SCR domain  
  2.56e-16   1920-1988   Complement control module/SCR domain  
  4.32e-16   2222-2287   Complement control module/SCR domain  
  9.17e-16   2455-2524   Complement control module/SCR domain  
  9.87e-16   1862-1928   Complement control module/SCR domain  
  0.0000000000000032   2338-2408   Complement control module/SCR domain  
  0.00000000000000389   3350-3409   Complement control module/SCR domain  
  0.00000000000000391   2513-2580   Complement control module/SCR domain  
  0.00000000000000403   1638-1701   Complement control module/SCR domain  
  0.0000000000000114   2397-2466   Complement control module/SCR domain  
  0.0000000000000127   2760-2822   Complement control module/SCR domain  
  0.0000000000000135   2876-2940   Complement control module/SCR domain  
  0.0000000000000236   2161-2226   Complement control module/SCR domain  
  0.0000000000000876   397-462   Complement control module/SCR domain  
  0.000000000000114   1582-1655   Complement control module/SCR domain  
  0.000000000000278   3050-3116   Complement control module/SCR domain  
  0.000000000000375   336-407   Complement control module/SCR domain  
  0.00000000000877   2995-3059   Complement control module/SCR domain  
  0.00000000000987   3172-3239   Complement control module/SCR domain  
  0.0000000000195   1977-2045   Complement control module/SCR domain  
  0.0000000000375   3230-3291   Complement control module/SCR domain  
  0.0000000000445   2603-2655   Complement control module/SCR domain  
  0.0000000000695   2938-2998   Complement control module/SCR domain  
  0.000000000181   2280-2349   Complement control module/SCR domain  
  0.000000000243   3111-3178   Complement control module/SCR domain  
  0.000000000653   1802-1867   Complement control module/SCR domain  
  0.00000000082   3287-3359   Complement control module/SCR domain  
  0.00000000195   2042-2109   Complement control module/SCR domain  
  0.000000403   451-512   Complement control module/SCR domain  
  0.00000133   685-738   Complement control module/SCR domain  
ENSORLP00000010286   0.000000000000486   692-743   Complement control module/SCR domain  
ENSORLP00000011295   0.00000000000000264   61-122   Complement control module/SCR domain  
  0.00000000000375   207-266   Complement control module/SCR domain  
  0.000000334   9-75   Complement control module/SCR domain  
ENSORLP00000011684   0.00000000000000208   55-119   Complement control module/SCR domain  
ENSORLP00000011746   0.0000131   27-86   Complement control module/SCR domain  
ENSORLP00000012372   5.5e-16   423-488   Complement control module/SCR domain  
  0.0000000000000917   483-546   Complement control module/SCR domain  
  0.00000000000445   69-133   Complement control module/SCR domain  
  0.000000000122   245-309   Complement control module/SCR domain  
  0.00000000124   551-609   Complement control module/SCR domain  
ENSORLP00000012392   0.0000000000862   2470-2530   Complement control module/SCR domain  
ENSORLP00000012617   3.37e-19   2713-2782   Complement control module/SCR domain  
  1.67e-18   2897-2966   Complement control module/SCR domain  
  2.7e-18   2656-2724   Complement control module/SCR domain  
  0.00000000000000109   2407-2480   Complement control module/SCR domain  
  0.00000000000000121   3014-3084   Complement control module/SCR domain  
  0.00000000000000167   316-387   Complement control module/SCR domain  
  0.00000000000000175   3076-3145   Complement control module/SCR domain  
  0.00000000000000208   2771-2845   Complement control module/SCR domain  
  0.00000000000000584   3196-3264   Complement control module/SCR domain  
  0.0000000000000104   2955-3019   Complement control module/SCR domain  
  0.0000000000000153   495-557   Complement control module/SCR domain  
  0.0000000000000167   2831-2891   Complement control module/SCR domain  
  0.0000000000000189   840-900   Complement control module/SCR domain  
  0.0000000000000195   2058-2127   Complement control module/SCR domain  
  0.0000000000000208   1886-1949   Complement control module/SCR domain  
  0.0000000000000297   1536-1599   Complement control module/SCR domain  
  0.000000000000139   1362-1426   Complement control module/SCR domain  
  0.000000000000243   5-65   Complement control module/SCR domain  
  0.000000000000297   2469-2539   Complement control module/SCR domain  
  0.000000000000695   1712-1776   Complement control module/SCR domain  
  0.000000000000751   1184-1250   Complement control module/SCR domain  
  0.000000000000876   2597-2660   Complement control module/SCR domain  
  0.000000000000903   3255-3313   Complement control module/SCR domain  
  0.000000000000931   3128-3190   Complement control module/SCR domain  
  0.00000000000195   665-734   Complement control module/SCR domain  
  0.00000000000944   1013-1073   Complement control module/SCR domain  
  0.000000000175   2233-2296   Complement control module/SCR domain  
  0.000000032   2555-2603   Complement control module/SCR domain  
ENSORLP00000013983   0.000000000000131   639-698   Complement control module/SCR domain  
  0.000000000000243   575-633   Complement control module/SCR domain  
  0.00000000000139   218-282   Complement control module/SCR domain  
  0.000000000197   398-462   Complement control module/SCR domain  
ENSORLP00000013987   0.0000000000000904   577-648   Complement control module/SCR domain  
  0.000000000000117   706-765   Complement control module/SCR domain  
  0.00000000000167   220-284   Complement control module/SCR domain  
  0.00000000000181   638-699   Complement control module/SCR domain  
  0.000000000236   400-464   Complement control module/SCR domain  
ENSORLP00000013990   0.0000000000000769   475-546   Complement control module/SCR domain  
  0.0000000000000996   604-663   Complement control module/SCR domain  
  0.00000000000136   118-182   Complement control module/SCR domain  
  0.00000000000153   536-597   Complement control module/SCR domain  
  0.000000000208   298-362   Complement control module/SCR domain  
ENSORLP00000014040   0.00000000000000195   79-145   Complement control module/SCR domain  
ENSORLP00000014298   2.02e-20   266-347   Complement control module/SCR domain  
  0.0000000000000197   206-269   Complement control module/SCR domain  
  0.0000000000131   147-215   Complement control module/SCR domain  
  0.00000000391   70-132   Complement control module/SCR domain  
ENSORLP00000015130   0.00000000000113   312-373   Complement control module/SCR domain  
ENSORLP00000015463   0.0000000000000598   312-382   Complement control module/SCR domain  
  0.00000000000653   379-451   Complement control module/SCR domain  
ENSORLP00000015482   0.00000000181   358-429   Complement control module/SCR domain  
  0.0000000117   294-361   Complement control module/SCR domain  
ENSORLP00000016270   0.000000000000537   270-329   Complement control module/SCR domain  
  0.000000000000603   389-450   Complement control module/SCR domain  
  0.00000000000328   147-206   Complement control module/SCR domain  
  0.0000000000109   83-142   Complement control module/SCR domain  
  0.000000000112   343-399   Complement control module/SCR domain  
  0.000000000406   211-278   Complement control module/SCR domain  
  0.00000000236   25-97   Complement control module/SCR domain  
ENSORLP00000017331   1.67e-19   46-114   Complement control module/SCR domain  
  0.0000000000000361   168-228   Complement control module/SCR domain  
  0.00000000000113   226-298   Complement control module/SCR domain  
  0.000000000459   103-177   Complement control module/SCR domain  
  0.000000000567   4-56   Complement control module/SCR domain  
ENSORLP00000017341   4.99e-17   265-336   Complement control module/SCR domain  
  0.0000000000000256   86-154   Complement control module/SCR domain  
  0.0000000000000629   207-267   Complement control module/SCR domain  
  0.0000000000249   25-91   Complement control module/SCR domain  
  0.0000031   143-216   Complement control module/SCR domain  
ENSORLP00000018569   0.0000000000000542   562-625   Complement control module/SCR domain  
  0.000000195   621-675   Complement control module/SCR domain  
ENSORLP00000018612   0.000000000361   647-712   Complement control module/SCR domain  
  0.0000486   702-761   Complement control module/SCR domain  
ENSORLP00000019399   0.00000000000514   1169-1229   Complement control module/SCR domain  
ENSORLP00000019573   0.0000000000514   1101-1158   Complement control module/SCR domain  
ENSORLP00000019627   0.00000000000153   110-166   Complement control module/SCR domain  
  0.0000000000054   44-105   Complement control module/SCR domain  
  0.000181   1-32   Complement control module/SCR domain  
ENSORLP00000019830   0.000000000139   8-50   Complement control module/SCR domain  
ENSORLP00000019831   0.0000000000000306   85-150   Complement control module/SCR domain  
  0.0000000000031   136-201   Complement control module/SCR domain  
  0.0000000000375   197-259   Complement control module/SCR domain  
  0.000000000135   32-95   Complement control module/SCR domain  
ENSORLP00000020059   0.00000000195   104-157   Complement control module/SCR domain  
  0.00000181   53-100   Complement control module/SCR domain  
ENSORLP00000020887   0.00000000000000459   294-366   Complement control module/SCR domain  
  0.0000000000000136   610-672   Complement control module/SCR domain  
  0.0000000000000195   535-601   Complement control module/SCR domain  
  0.0000000000000723   350-415   Complement control module/SCR domain  
  0.000000000000106   169-234   Complement control module/SCR domain  
  0.000000000000334   481-545   Complement control module/SCR domain  
  0.000000000000931   411-477   Complement control module/SCR domain  
  0.00000000000131   240-296   Complement control module/SCR domain  
  0.0000000000118   661-728   Complement control module/SCR domain  
ENSORLP00000020911   0.00000000000000292   16-76   Complement control module/SCR domain  
ENSORLP00000020912   4.17e-16   33-106   Complement control module/SCR domain  
  0.000000000000236   90-147   Complement control module/SCR domain  
ENSORLP00000020920   0.000000000000195   265-325   Complement control module/SCR domain  
  0.00000000000111   208-269   Complement control module/SCR domain  
ENSORLP00000021056   0.0000000264   40-101   Complement control module/SCR domain  
ENSORLP00000021058   0.000000000135   40-100   Complement control module/SCR domain  
ENSORLP00000022732   0.000000000000499   141-201   Complement control module/SCR domain  
  0.000000000108   83-138   Complement control module/SCR domain  
  0.00000971   37-80   Complement control module/SCR domain  
ENSORLP00000023311   0.0000000153   2-61   Complement control module/SCR domain  
ENSORLP00000023717   0.0000000000000121   89-154   Complement control module/SCR domain  
  0.00000000000077   915-977   Complement control module/SCR domain  
  0.00000000000354   571-632   Complement control module/SCR domain  
  0.0000000000197   857-912   Complement control module/SCR domain  
  0.000000000189   207-273   Complement control module/SCR domain  
  0.000000000472   149-218   Complement control module/SCR domain  
  0.0000000208   736-800   Complement control module/SCR domain  
  0.00000373   266-335   Complement control module/SCR domain  
  0.00000823   793-853   Complement control module/SCR domain  
  0.0000288   393-448   Complement control module/SCR domain  
  0.0000389   451-509   Complement control module/SCR domain  
  0.0000629   358-402   Complement control module/SCR domain  
  0.00108   511-554   Complement control module/SCR domain  
  0.00337   48-94   Complement control module/SCR domain  
  0.00418   640-681   Complement control module/SCR domain  
ENSORLP00000023887   0.000000000000742   118-179   Complement control module/SCR domain  
  0.00000653   2-56   Complement control module/SCR domain  
  0.000195   59-112   Complement control module/SCR domain  
  0.00344   186-228   Complement control module/SCR domain  
ENSORLP00000023888   0.000000000000809   63-124   Complement control module/SCR domain  
  0.00000000391   178-242   Complement control module/SCR domain  
  0.000222   4-58   Complement control module/SCR domain  
  0.00396   131-173   Complement control module/SCR domain  
ENSORLP00000023890   0.0000000000000302   118-180   Complement control module/SCR domain  
  0.000000000297   61-115   Complement control module/SCR domain  
  0.00000459   16-57   Complement control module/SCR domain  
ENSORLP00000023898   0.000000000526   186-252   Complement control module/SCR domain  
  0.000000000584   128-198   Complement control module/SCR domain  
  0.00000000334   65-134   Complement control module/SCR domain  
  0.00000032   2-61   Complement control module/SCR domain  
ENSORLP00000023905   0.000000000000279   143-205   Complement control module/SCR domain  
  0.00000000513   88-143   Complement control module/SCR domain  
  0.0000153   42-84   Complement control module/SCR domain  
  0.00987   6-28   Complement control module/SCR domain  
ENSORLP00000024866   0.0000000904   22-74   Complement control module/SCR domain  
ENSORLP00000024870   0.00000000000055   9-74   Complement control module/SCR domain  
  0.00000000000473   70-132   Complement control module/SCR domain  
ENSORLP00000025261   0.000000000334   25-88   Complement control module/SCR domain  
  0.000000378   81-150   Complement control module/SCR domain  
ENSORLP00000025262   0.0000000000000306   118-180   Complement control module/SCR domain  
  0.000000000702   61-115   Complement control module/SCR domain  
  0.0000148   16-57   Complement control module/SCR domain  
 
Weak hits:
ENSORLP00000007204   0.00101   16-56   Complement control module/SCR domain  
ENSORLP00000012860   0.0132   181-227   Complement control module/SCR domain  
ENSORLP00000021169   0.0973   1098-1156   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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