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  Home > Genomes > Mus musculus 63_37 (longest transcript per gene) > Spectrin repeat domains


Spectrin repeat superfamily domain assignments
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Mus musculus 63_37 (longest transcript per gene)

Assignment details

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Mus musculus 63_37 (longest transcript per gene) (Duplicate) has 307 significant domains in 33 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000006626   2.01e-32   280-402   Spectrin repeat  
  1.83e-31   516-637   Spectrin repeat  
  2.88e-24   397-512   Spectrin repeat  
  3.17e-20   641-752   Spectrin repeat  
ENSMUSP00000006629   7.72e-36   295-416   Spectrin repeat  
  7.32e-32   603-742   Spectrin repeat  
  2.75e-30   1647-1801   Spectrin repeat  
  5.76e-29   1011-1166   Spectrin repeat  
  6.55e-28   1223-1376   Spectrin repeat  
  1.14e-27   904-1059   Spectrin repeat  
  1.3e-27   1859-2013   Spectrin repeat  
  3.36e-25   810-951   Spectrin repeat  
  4.68e-25   1453-1590   Spectrin repeat  
  1.7e-23   425-528   Spectrin repeat  
  3.8e-22   529-637   Spectrin repeat  
  1.44e-17   1384-1482   Spectrin repeat  
  0.000000000000222   1994-2079   Spectrin repeat  
  0.0158   1170-1242   Spectrin repeat  
ENSMUSP00000008991   9.42e-34   297-419   Spectrin repeat  
  1.69e-30   907-1062   Spectrin repeat  
  2.64e-27   1014-1168   Spectrin repeat  
  1.94e-26   1226-1379   Spectrin repeat  
  9.17e-26   1855-2010   Spectrin repeat  
  1.58e-25   697-815   Spectrin repeat  
  9.42e-22   1562-1692   Spectrin repeat  
  2.16e-21   532-640   Spectrin repeat  
  7.56e-21   1695-1801   Spectrin repeat  
  9.29e-20   1483-1594   Spectrin repeat  
  1.03e-19   421-537   Spectrin repeat  
  1.03e-19   1381-1493   Spectrin repeat  
  8.06e-17   820-928   Spectrin repeat  
  0.000000000173   2015-2075   Spectrin repeat  
ENSMUSP00000011895   6.41e-31   303-424   Spectrin repeat  
  1.25e-28   1565-1721   Spectrin repeat  
  6.96e-23   433-535   Spectrin repeat  
  9.95e-23   846-978   Spectrin repeat  
  2.28e-22   1886-2042   Spectrin repeat  
  1.65e-21   1778-1930   Spectrin repeat  
  1.73e-19   1250-1402   Spectrin repeat  
  1.57e-17   527-648   Spectrin repeat  
  3.54e-16   739-835   Spectrin repeat  
  0.00000000000000396   1083-1197   Spectrin repeat  
  0.0000000000331   2044-2106   Spectrin repeat  
  0.000000000038   1369-1472   Spectrin repeat  
  0.000000000054   647-768   Spectrin repeat  
  0.00384   993-1077   Spectrin repeat  
ENSMUSP00000021458   1.7e-33   295-416   Spectrin repeat  
  9.84e-30   1640-1793   Spectrin repeat  
  3.91e-29   601-741   Spectrin repeat  
  4.26e-29   1532-1687   Spectrin repeat  
  8.04e-29   1009-1164   Spectrin repeat  
  1.44e-27   1851-2005   Spectrin repeat  
  1.24e-24   903-1050   Spectrin repeat  
  3.89e-24   1228-1375   Spectrin repeat  
  6.02e-22   425-526   Spectrin repeat  
  1.35e-20   738-854   Spectrin repeat  
  2.08e-18   529-636   Spectrin repeat  
  0.0000000000173   2011-2070   Spectrin repeat  
  0.000000000537   1386-1477   Spectrin repeat  
  0.082   1170-1243   Spectrin repeat  
ENSMUSP00000021554   4.68e-34   267-389   Spectrin repeat  
  5.76e-31   503-624   Spectrin repeat  
  5.89e-27   390-498   Spectrin repeat  
  1.37e-20   627-739   Spectrin repeat  
ENSMUSP00000027817   2.88e-35   1659-1809   Spectrin repeat  
  2.42e-33   635-787   Spectrin repeat  
  7.2e-31   422-576   Spectrin repeat  
  1.92e-30   754-893   Spectrin repeat  
  5.69e-30   316-468   Spectrin repeat  
  9.42e-28   1765-1922   Spectrin repeat  
  2.42e-27   1235-1378   Spectrin repeat  
  1.02e-26   1341-1487   Spectrin repeat  
  1.44e-25   1447-1570   Spectrin repeat  
  4.92e-25   157-261   Spectrin repeat  
  1.07e-24   2034-2146   Spectrin repeat  
  1.87e-21   18-152   Spectrin repeat  
  2.75e-19   1891-2027   Spectrin repeat  
  3.27e-18   2153-2260   Spectrin repeat  
  1.99e-16   898-962,1040-1078   Spectrin repeat  
  0.00000000000563   1086-1180   Spectrin repeat  
ENSMUSP00000037850   0.0000000000519   194-330   Spectrin repeat  
  0.00504   585-717   Spectrin repeat  
ENSMUSP00000039360   8.34e-16   266-391   Spectrin repeat  
  0.000000102   689-809   Spectrin repeat  
  0.000000785   142-210   Spectrin repeat  
  0.0000187   563-698   Spectrin repeat  
  0.00924   458-609   Spectrin repeat  
ENSMUSP00000042016   0.00000000000523   463-602   Spectrin repeat  
  0.000302   244-372   Spectrin repeat  
  0.00208   376-499   Spectrin repeat  
ENSMUSP00000047697   1.7e-18   6179-6334   Spectrin repeat  
  9.48e-18   5959-6085   Spectrin repeat  
  0.0000000000000168   6603-6749   Spectrin repeat  
  0.0000000000000256   6088-6198   Spectrin repeat  
  0.000000000000484   4901-5038   Spectrin repeat  
  0.000000000224   5049-5154   Spectrin repeat  
  0.000000000738   5852-5971   Spectrin repeat  
  0.00000000374   5120-5222   Spectrin repeat  
  0.00000000475   2687-2820   Spectrin repeat  
  0.0000000547   1492-1631   Spectrin repeat  
  0.0000000756   6501-6630   Spectrin repeat  
  0.000000158   5239-5363   Spectrin repeat  
  0.000000719   2091-2213   Spectrin repeat  
  0.000000777   2028-2124   Spectrin repeat  
  0.00000202   5547-5669   Spectrin repeat  
  0.00000236   5645-5793   Spectrin repeat  
  0.00000677   3299-3453   Spectrin repeat  
  0.0000169   3723-3871   Spectrin repeat  
  0.0000216   1883-2022   Spectrin repeat  
  0.0000811   4818-4932   Spectrin repeat  
  0.000121   338-458   Spectrin repeat  
  0.000175   4584-4687   Spectrin repeat  
  0.000288   5330-5446   Spectrin repeat  
  0.000512   2215-2339   Spectrin repeat  
  0.00112   537-666   Spectrin repeat  
  0.00324   2788-2928   Spectrin repeat  
  0.0345   2493-2606   Spectrin repeat  
  0.054   3208-3307   Spectrin repeat  
ENSMUSP00000051825   6e-21   8058-8213   Spectrin repeat  
  1.68e-19   8387-8547   Spectrin repeat  
  1.44e-18   7838-7962   Spectrin repeat  
  8.11e-18   1621-1759   Spectrin repeat  
  2.09e-17   6977-7122   Spectrin repeat  
  5.04e-17   3272-3392   Spectrin repeat  
  3.72e-16   5050-5205   Spectrin repeat  
  7.08e-16   7430-7561   Spectrin repeat  
  8.77e-16   7102-7233   Spectrin repeat  
  0.00000000000000295   2460-2615   Spectrin repeat  
  0.00000000000000682   4290-4446   Spectrin repeat  
  0.0000000000000111   3889-3997   Spectrin repeat  
  0.0000000000000237   2679-2835   Spectrin repeat  
  0.0000000000000302   4526-4660   Spectrin repeat  
  0.0000000000000454   3119-3274   Spectrin repeat  
  0.000000000000499   1407-1539   Spectrin repeat  
  0.000000000000523   6789-6907   Spectrin repeat  
  0.000000000000605   7966-8076   Spectrin repeat  
  0.000000000000864   8513-8659   Spectrin repeat  
  0.00000000000096   3762-3883   Spectrin repeat  
  0.0000000000012   561-700   Spectrin repeat  
  0.0000000000111   1713-1865   Spectrin repeat  
  0.0000000000406   7353-7464   Spectrin repeat  
  0.0000000000461   4441-4558   Spectrin repeat  
  0.0000000000798   3568-3699   Spectrin repeat  
  0.0000000000888   5746-5820,5931-5977   Spectrin repeat  
  0.000000000243   2833-2947   Spectrin repeat  
  0.000000000245   4958-5079   Spectrin repeat  
  0.000000000273   5940-6079   Spectrin repeat  
  0.000000000474   7739-7852   Spectrin repeat  
  0.00000000106   2051-2190   Spectrin repeat  
  0.00000000144   2248-2403   Spectrin repeat  
  0.00000000168   3461-3565   Spectrin repeat  
  0.00000000468   1080-1229   Spectrin repeat  
  0.0000000157   1928-2075   Spectrin repeat  
  0.0000000313   5476-5596   Spectrin repeat  
  0.000000272   7558-7671   Spectrin repeat  
  0.00000056   5174-5278   Spectrin repeat  
  0.000000633   4620-4773   Spectrin repeat  
  0.00000156   3032-3144   Spectrin repeat  
  0.00000227   879-1016   Spectrin repeat  
  0.0000034   4000-4134   Spectrin repeat  
  0.0000036   1545-1655   Spectrin repeat  
  0.00000484   6384-6489   Spectrin repeat  
  0.00000612   6561-6643   Spectrin repeat  
  0.0000226   6089-6202   Spectrin repeat  
  0.0000391   5599-5723   Spectrin repeat  
  0.0000504   4878-4988   Spectrin repeat  
  0.000128   3386-3487   Spectrin repeat  
  0.0101   6224-6320   Spectrin repeat  
  0.0851   4121-4225   Spectrin repeat  
  0.0916   5291-5378   Spectrin repeat  
ENSMUSP00000052945   0.0000000158   48-127   Spectrin repeat  
  0.000000288   209-352   Spectrin repeat  
  0.000921   962-1118   Spectrin repeat  
  0.00461   132-242   Spectrin repeat  
  0.0241   863-1008   Spectrin repeat  
  0.0396   701-778   Spectrin repeat  
ENSMUSP00000053305   0.00000000131   156-282   Spectrin repeat  
  0.000158   96-178   Spectrin repeat  
ENSMUSP00000054943   0.00000000000907   600-699   Spectrin repeat  
ENSMUSP00000055874   0.0000173   108-197   Spectrin repeat  
ENSMUSP00000066068   4.32e-35   287-409   Spectrin repeat  
  9.16e-30   523-641   Spectrin repeat  
  2.36e-25   410-518   Spectrin repeat  
  3.17e-23   647-759   Spectrin repeat  
ENSMUSP00000067075   0.00000024   363-504   Spectrin repeat  
ENSMUSP00000067708   2.22e-34   274-396   Spectrin repeat  
  1.44e-31   510-631   Spectrin repeat  
  8.11e-24   391-505   Spectrin repeat  
  1.27e-22   635-746   Spectrin repeat  
ENSMUSP00000073124   2.45e-23   423-539   Spectrin repeat  
  3.84e-20   1297-1482   Spectrin repeat  
  3e-17   763-865   Spectrin repeat  
  0.00000000017   670-762   Spectrin repeat  
  0.000173   870-947   Spectrin repeat  
  0.00023   1187-1297   Spectrin repeat  
ENSMUSP00000074459   5.89e-19   278-414   Spectrin repeat  
  1.23e-17   1089-1226   Spectrin repeat  
  1.78e-17   842-992   Spectrin repeat  
  2.16e-17   500-641   Spectrin repeat  
  0.0000000183   191-309   Spectrin repeat  
  0.0000126   646-766   Spectrin repeat  
ENSMUSP00000076093   1.3e-24   1923-2079   Spectrin repeat  
  6.81e-20   311-418   Spectrin repeat  
  2.3e-19   2503-2634   Spectrin repeat  
  1.7e-18   388-526   Spectrin repeat  
  2.16e-16   494-631   Spectrin repeat  
  0.00000000000000366   984-1121   Spectrin repeat  
  0.0000000000000122   1181-1333   Spectrin repeat  
  0.0000000000000498   743-901   Spectrin repeat  
  0.000000000000111   2656-2795   Spectrin repeat  
  0.000000000000262   2231-2332   Spectrin repeat  
  0.0000000000101   1492-1647   Spectrin repeat  
  0.00000000252   2393-2516   Spectrin repeat  
  0.000000024   912-1019   Spectrin repeat  
  0.000000944   1621-1746   Spectrin repeat  
  0.0000183   2078-2178   Spectrin repeat  
  0.000208   1306-1398   Spectrin repeat  
  0.00204   1415-1509   Spectrin repeat  
ENSMUSP00000081324   4.43e-29   6126-6279   Spectrin repeat  
  6.52e-29   5249-5409   Spectrin repeat  
  9.6e-28   6563-6720   Spectrin repeat  
  1.22e-23   310-426   Spectrin repeat  
  1.43e-23   5360-5506   Spectrin repeat  
  2.67e-23   4814-4971   Spectrin repeat  
  9.29e-23   6716-6833   Spectrin repeat  
  1.56e-22   6365-6504   Spectrin repeat  
  5.95e-21   6782-6909,6936-6967   Spectrin repeat  
  1.83e-19   5689-5844   Spectrin repeat  
  6.87e-19   6026-6141   Spectrin repeat  
  1.83e-17   3924-4055   Spectrin repeat  
  1.14e-16   6282-6397   Spectrin repeat  
  5.76e-16   4481-4605   Spectrin repeat  
  7.33e-16   5469-5591   Spectrin repeat  
  0.00000000000000449   5028-5188   Spectrin repeat  
  0.0000000000000153   4704-4825   Spectrin repeat  
  0.0000000000000192   1223-1353,1380-1406   Spectrin repeat  
  0.0000000000000222   3802-3913   Spectrin repeat  
  0.0000000000000249   5578-5723   Spectrin repeat  
  0.000000000000317   654-782   Spectrin repeat  
  0.00000000000406   4389-4495   Spectrin repeat  
  0.0000000000072   5925-6040   Spectrin repeat  
  0.0000000000144   5842-5952   Spectrin repeat  
  0.0000000000192   4235-4354   Spectrin repeat  
  0.00000000157   591-680   Spectrin repeat  
  0.0000000032   743-867   Spectrin repeat  
  0.00000000907   4037-4142   Spectrin repeat  
  0.0000000123   4128-4244   Spectrin repeat  
  0.0000000648   4611-4714   Spectrin repeat  
  0.00000558   3404-3554   Spectrin repeat  
  0.0000187   1424-1540   Spectrin repeat  
  0.0000259   3571-3688   Spectrin repeat  
  0.0662   1108-1217   Spectrin repeat  
  0.0702   923-1001,1099-1156   Spectrin repeat  
ENSMUSP00000087714   5.28e-21   309-445   Spectrin repeat  
  1.7e-20   1106-1243   Spectrin repeat  
  1.61e-19   856-1009   Spectrin repeat  
  2.55e-18   530-671   Spectrin repeat  
  0.0000000108   676-783   Spectrin repeat  
  0.0000000314   222-339   Spectrin repeat  
  0.0767   450-562   Spectrin repeat  
ENSMUSP00000093090   0.000000000022   60-188   Spectrin repeat  
  0.00000000017   643-741   Spectrin repeat  
  0.000000000432   216-328   Spectrin repeat  
  0.00000266   501-610   Spectrin repeat  
  0.0683   435-526   Spectrin repeat  
ENSMUSP00000095392   1.09e-26   6190-6307   Spectrin repeat  
  1.8e-26   6364-6523   Spectrin repeat  
  3.74e-26   267-383   Spectrin repeat  
  1.7e-25   6605-6740   Spectrin repeat  
  1.83e-24   6036-6195   Spectrin repeat  
  4.45e-24   5705-5864   Spectrin repeat  
  4.6e-24   5272-5428   Spectrin repeat  
  1.8e-23   5380-5537   Spectrin repeat  
  5.91e-23   4502-4662   Spectrin repeat  
  1.57e-21   6735-6851   Spectrin repeat  
  3.91e-21   4834-4989   Spectrin repeat  
  1.7e-19   4053-4188   Spectrin repeat  
  8.35e-19   6802-6927,6958-6989   Spectrin repeat  
  1.44e-18   6524-6634   Spectrin repeat  
  2.07e-18   5601-5755   Spectrin repeat  
  7.63e-16   701-803   Spectrin repeat  
  0.0000000000000327   5092-5210   Spectrin repeat  
  0.0000000000000402   1235-1363,1390-1418   Spectrin repeat  
  0.000000000000244   3798-3921   Spectrin repeat  
  0.00000000000068   4722-4845   Spectrin repeat  
  0.000000000000824   3971-4084   Spectrin repeat  
  0.00000000000461   5862-5975   Spectrin repeat  
  0.0000000000274   4251-4373   Spectrin repeat  
  0.00000000054   4410-4521   Spectrin repeat  
  0.0000000105   608-700   Spectrin repeat  
  0.0000808   3564-3680   Spectrin repeat  
  0.000122   777-882,953-965   Spectrin repeat  
  0.000366   3317-3425   Spectrin repeat  
  0.00576   5546-5617   Spectrin repeat  
  0.0118   1067-1171   Spectrin repeat  
  0.072   1435-1533   Spectrin repeat  
ENSMUSP00000106350   0.0000000000249   782-879   Spectrin repeat  
  0.000000288   1078-1185   Spectrin repeat  
  0.000000576   959-1054   Spectrin repeat  
ENSMUSP00000106500   7.63e-18   283-424   Spectrin repeat  
ENSMUSP00000108850   0.0000000000000113   244-365   Spectrin repeat  
  0.00000000000679   102-200   Spectrin repeat  
ENSMUSP00000109348   6.2e-39   743-888   Spectrin repeat  
  1.32e-36   203-359   Spectrin repeat  
  6.28e-34   1805-1959   Spectrin repeat  
  1.2e-33   521-673   Spectrin repeat  
  2.78e-32   1267-1403   Spectrin repeat  
  4.19e-32   1697-1837   Spectrin repeat  
  1.96e-31   1375-1516   Spectrin repeat  
  3.84e-31   418-569   Spectrin repeat  
  1.51e-30   12-145   Spectrin repeat  
  2.02e-29   1188-1304   Spectrin repeat  
  1.05e-28   1479-1640   Spectrin repeat  
  1.31e-28   1909-2064   Spectrin repeat  
  4.19e-26   2071-2184   Spectrin repeat  
  1.44e-19   1037-1145   Spectrin repeat  
  3.01e-19   886-962,1031-1074   Spectrin repeat  
  7.92e-16   2186-2322   Spectrin repeat  
ENSMUSP00000109633   8e-23   998-1154   Spectrin repeat  
  2.47e-19   2053-2210   Spectrin repeat  
  8.92e-19   2518-2679   Spectrin repeat  
  1.77e-18   1215-1369   Spectrin repeat  
  1.87e-18   2744-2871   Spectrin repeat  
  2.76e-18   337-449   Spectrin repeat  
  4.84e-18   2894-3032   Spectrin repeat  
  5.25e-17   524-662   Spectrin repeat  
  0.000000000000112   1521-1640   Spectrin repeat  
  0.000000000000205   2267-2414   Spectrin repeat  
  0.00000000000213   778-903   Spectrin repeat  
  0.0000000000049   1825-1967   Spectrin repeat  
  0.00000000000654   1650-1774   Spectrin repeat  
  0.0000000000109   457-558   Spectrin repeat  
  0.00000338   2457-2532   Spectrin repeat  
  0.000863   1429-1557   Spectrin repeat  
  0.000863   922-1012   Spectrin repeat  
ENSMUSP00000115062   0.00000000000000136   848-976,1003-1030   Spectrin repeat  
  0.000000000000792   338-467   Spectrin repeat  
  0.0000547   202-284   Spectrin repeat  
ENSMUSP00000115974   6.09e-29   536-688   Spectrin repeat  
  1.96e-26   218-373   Spectrin repeat  
  2.62e-23   338-477   Spectrin repeat  
  2.88e-18   985-1110   Spectrin repeat  
  1.7e-17   757-901   Spectrin repeat  
  0.00000000000000122   1092-1203   Spectrin repeat  
  0.00000000000000374   34-160   Spectrin repeat  
  0.0000304   908-962   Spectrin repeat  
 
Weak hits:
ENSMUSP00000013771   0.048   181-238   Spectrin repeat  
ENSMUSP00000014686   0.0475   182-288   Spectrin repeat  
ENSMUSP00000020649   0.00806   893-966   Spectrin repeat  
ENSMUSP00000026553   0.0575   237-290   Spectrin repeat  
ENSMUSP00000029447   0.000219   98-186   Spectrin repeat  
ENSMUSP00000037075   0.0201   248-344   Spectrin repeat  
ENSMUSP00000045252   0.0223   9-89   Spectrin repeat  
ENSMUSP00000072614   0.00259   86-145   Spectrin repeat  
ENSMUSP00000074147   0.0863   358-491   Spectrin repeat  
ENSMUSP00000080221   0.0248   29-109   Spectrin repeat  
ENSMUSP00000101915   0.0381   1013-1185   Spectrin repeat  
ENSMUSP00000103910   0.0115   30-107   Spectrin repeat  
ENSMUSP00000104027   0.054   426-469   Spectrin repeat  
ENSMUSP00000107292   0.0748   11-105   Spectrin repeat  
ENSMUSP00000108058   0.0576   165-235   Spectrin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   649625 649625
No Yes Homo sapiens 76_38 Human 1347 188
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 483 54
No Yes Pongo abelii 76_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 266 33
No Yes Papio anubis 76 Olive baboon 276 35
No Yes Macaca mulatta 76_1 Rhesus monkey 743 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 834 100
No Yes Otolemur garnettii 76_3 Small-eared galago 324 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 76_5.0 Norway rat 406 50
No Yes Mus musculus 76_38 House mouse 985 134
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 300 39
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 310 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 301 38
No Yes Ochotona princeps 76 American pika 249 27
No Yes Tupaia belangeri 76 Northern tree shrew 240 28
No Yes Sus scrofa 76_10.2 Pig 279 49
No Yes Bos taurus 76_3.1 Cattle 335 37
No Yes Ovis aries 76_3.1 Sheep 309 40
No Yes Vicugna pacos 76_1 Alpaca 190 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 448 46
No Yes Canis familiaris 76_3.1 Dog 503 57
No Yes Felis catus 76_6.2 Domestic cat 320 52
No Yes Equus caballus 76_2 Horse 738 71
No Yes Myotis lucifugus 76_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 76_1 Large flying fox 289 32
No Yes Sorex araneus 76_1 European shrew 190 23
No Yes Erinaceus europaeus 76 Western European hedgehog 184 20
No Yes Procavia capensis 76_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 76_3 African savanna elephant 421 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 391 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 76_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 355 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 360 39
No Yes Ornithorhynchus anatinus 76_5 Platypus 341 71
No Yes Saccoglossus kowalevskii v3.0   2079 67
No Yes Petromyzon marinus 76_7.0 Sea lamprey 172 32
No Yes Meleagris gallopavo 76_2 Turkey 299 37
No Yes Gallus gallus 76_4 Chicken 332 35
No Yes Anas platyrhynchos 76_1.0 Mallard 292 36
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 264 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 291 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 266 39
No Yes Anolis carolinensis 76_2.0 Green anole 299 35
No Yes Xenopus laevis African clawed frog 101 33
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 313 41
No Yes Latimeria chalumnae 76_1 Coelacanth 352 47
No Yes Lepisosteus oculatus 76 Spotted gar 489 49
No Yes Gadus morhua 76_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 397 56
No Yes Takifugu rubripes 76_4 Torafugu 1586 184
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 453 55
No Yes Oryzias latipes 76_1 Japanese medaka 351 49
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 349 45
No Yes Poecilia formosa 76 Amazon molly 366 42
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 456 53
No Yes Astyanax mexicanus 76 Mexican tetra 398 58
No Yes Danio rerio 76_9 Zebrafish 590 93
No Yes Oikopleura dioica   51 13
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 180 28
No Yes Ciona intestinalis 76 Vase tunicate 69 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 287 42
No Yes Adineta vaga   157 43
No Yes Octopus bimaculoides 280   368 41
No Yes Crassostrea gigas 22 Pacific oyster 185 21
No Yes Lottia gigantea Owl limpet 185 16
No Yes Helobdella robusta   96 16
No Yes Capitella sp. I   182 19
No Yes Danaus plexippus OGS1.0 Monarch butterfly 151 21
No Yes Heliconius melpomene Postman butterfly 125 15
No Yes Bombyx mori Domestic silkworm 132 44
No Yes Nasonia vitripennis Jewel wasp 131 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 389 45
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 159 18
No Yes Linepithema humile v1.1 Argentine ant 150 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 157 24
No Yes Solenopsis invicta v.2.2.3 Red fire ant 131 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 153 13
No Yes Atta cephalotes v1.1   153 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 172 16
No Yes Lucilia cuprina Australian sheep blowfly 149 15
No Yes Drosophila grimshawi 1.3   161 14
No Yes Drosophila willistoni 1.3   160 13
No Yes Drosophila pseudoobscura 2.13   152 13
No Yes Drosophila persimilis 1.3   114 19
No Yes Drosophila suzukii   150 12
No Yes Drosophila yakuba 1.3   160 12
No Yes Drosophila simulans 1.3   80 16
No Yes Drosophila sechellia 1.3   140 14
No Yes Drosophila melanogaster 76_5 Fruit fly 1379 76
No Yes Drosophila erecta 1.3   158 12
No Yes Drosophila ananassae 1.3   157 11
No Yes Drosophila virilis 1.2   125 14
No Yes Drosophila mojavensis 1.3   158 15
No Yes Megaselia scalaris 22   92 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 129 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 120 18
No Yes Anopheles darlingi 22 American malaria mosquito 91 11
No Yes Anopheles gambiae 49_3j African malaria mosquito 140 11
No Yes Tribolium castaneum 3.0 Red flour beetle 158 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 163 16
No Yes Acyrthosiphon pisum Pea aphid 147 16
No Yes Rhodnius prolixus 22   130 18
No Yes Daphnia pulex Common water flea 197 26
No Yes Strigamia maritima 22   161 13
No Yes Sarcoptes scabiei   112 9
No Yes Tetranychus urticae Two-spotted spider mite 91 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 56 11
No Yes Pristionchus pacificus   91 24
No Yes Meloidogyne incognita Southern root-knot nematode 48 12
No Yes Meloidogyne hapla   33 8
No Yes Onchocerca volvulus 22   100 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 149 17
No Yes Caenorhabditis japonica   107 12
No Yes Caenorhabditis brenneri   135 19
No Yes Caenorhabditis remanei   99 19
No Yes Caenorhabditis elegans 76_235 Roundworm 328 33
No Yes Caenorhabditis briggsae 2   91 11
No Yes Trichinella spiralis 22   102 13
No Yes Hymenolepis microstoma   93 13
No Yes Echinococcus multilocularis   94 14
No Yes Echinococcus granulosus   98 12
No Yes Taenia solium Pork tapeworm 84 16
No Yes Schistosoma mansoni   105 22
No Yes Mnemiopsis leidyi Sea walnut 61 15
No Yes Thelohanellus kitauei   3 1
No Yes Acropora digitifera v1.0   185 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 134 26
No Yes Hydra vulgaris   81 17
No Yes Amphimedon queenslandica   94 17
No Yes Trichoplax adhaerens   135 14
No Yes Proterospongia sp. ATCC 50818   79 12
No Yes Monosiga brevicollis   52 9
No Yes Sphaeroforma arctica JP610   4 1
No Yes Capsaspora owczarzaki ATCC 30864   20 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   2 1
No Yes Phycomyces blakesleeanus   2 1
No Yes Rhizopus oryzae RA 99-880   6 4
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   8 5
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   3 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Postia placenta   3 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   3 2
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   3 2
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 2
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 3
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   2 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   2 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 1
No Yes Penicillium chrysogenum v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus terreus NIH2624   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   2 1
No Yes Tuber melanosporum Vittad Perigord truffle 2 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 3
No Yes Spizellomyces punctatus DAOM BR117   2 1
No Yes Dictyostelium discoideum   4 1
No Yes Dictyostelium purpureum   4 1
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 1
No Yes Capsella rubella v183   1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   6 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Trypanosoma vivax   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   2 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 285 54
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 914 52
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 193 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 98 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 240 26
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   2 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   2 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 1
No Yes Batrachochytrium dendrobatidis JAM81   2 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1579 208
No Yes Homo sapiens (NCBI version) Human 646 76
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 307 33
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 109 13
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 106 42
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 97 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 400 38
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 282 36
No Yes Pongo abelii 69_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 245 32
No Yes Macaca mulatta 69_1 Rhesus monkey 304 35
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 33
No Yes Otolemur garnettii 69_3 Small-eared galago 312 34
No Yes Microcebus murinus 69_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 69_3.4 Norway rat 297 34
No Yes Mus musculus 69_38 House mouse 266 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 288 33
No Yes Cavia porcellus 69_3 Domestic guinea pig 309 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 39
No Yes Ochotona princeps 69 American pika 249 27
No Yes Tupaia belangeri 69 Northern tree shrew 240 28
No Yes Sus scrofa 69_10.2 Pig 232 39
No Yes Bos taurus 69_3.1 Cattle 304 34
No Yes Vicugna pacos 69_1 Alpaca 190 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 69_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 309 36
No Yes Canis familiaris 69_3.1 Dog 316 35
No Yes Felis catus 69 Domestic cat 181 28
No Yes Equus caballus 69_2 Horse 323 35
No Yes Myotis lucifugus 69_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 69_1 Large flying fox 289 32
No Yes Sorex araneus 69_1 European shrew 190 23
No Yes Erinaceus europaeus 69 Western European hedgehog 184 20
No Yes Procavia capensis 69_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 69_3 African savanna elephant 262 34
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 205 25
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 69_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 250 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 306 66
No Yes Petromyzon marinus 69_7.0 Sea lamprey 157 28
No Yes Meleagris gallopavo 69_2 Turkey 262 28
No Yes Gallus gallus 69_2 Chicken 284 29
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 257 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 233 33
No Yes Anolis carolinensis 69_2.0 Green anole 291 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 289 33
No Yes Latimeria chalumnae 69_1 Coelacanth 273 37
No Yes Gadus morhua 69_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 300 41
No Yes Takifugu rubripes 69_4 Torafugu 381 43
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 372 42
No Yes Oryzias latipes 69_1 Japanese medaka 317 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 349 45
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 40
No Yes Danio rerio 69_9 Zebrafish 340 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 24 7
No Yes Ciona intestinalis 69 Vase tunicate 65 10
No Yes Drosophila melanogaster 69_5 Fruit fly 124 10
No Yes Caenorhabditis elegans 69_215 Roundworm 103 11
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   387404 34306
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes Protozoadb 2010_08 (Protozoadb)   14 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10877 1400
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   159518 21102
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   39 34
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 11
No Yes Protein Data Bank (all PDB sequenc)   131 69
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   213 213
No Yes TargetDB (Targets)   200 79
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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