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  Home > Genomes > Rattus norvegicus 69_3.4 > TNF receptor-like domains


TNF receptor-like superfamily domain assignments
in
Rattus norvegicus 69_3.4

Assignment details

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Rattus norvegicus 69_3.4 has 46 significant domains in 25 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000003139   6.71e-17   36-80   BAFF receptor-like  
  0.000029   3-39   BAFF receptor-like  
ENSRNOP00000007268   2.59e-16   86-124   TNF receptor-like  
  0.0000000000565   32-84   TNF receptor-like  
  0.000000000127   125-166   TNF receptor-like  
  0.000000000968   167-190   TNF receptor-like  
ENSRNOP00000010086   0.000000000000345   20-49   BAFF receptor-like  
ENSRNOP00000011344   0.00000000000576   103-160   TNF receptor-like  
  0.0000000000138   32-80   TNF receptor-like  
ENSRNOP00000015918   0.000000000115   65-109   TNF receptor-like  
  0.000000000457   129-186   TNF receptor-like  
ENSRNOP00000017429   0.0000196   3-61   TNF receptor-like  
ENSRNOP00000021129   0.000000000000437   14-65   TNF receptor-like  
  0.00000000145   88-147   TNF receptor-like  
  0.000647   149-172   TNF receptor-like  
ENSRNOP00000022478   0.000000000000265   39-95   TNF receptor-like  
  0.0000000238   117-181   TNF receptor-like  
ENSRNOP00000022967   0.00000235   78-129   TNF receptor-like  
ENSRNOP00000025173   0.00000388   497-542   TNF receptor-like  
ENSRNOP00000025928   0.0000000000212   43-99   TNF receptor-like  
  0.00000000141   101-145   TNF receptor-like  
ENSRNOP00000026184   0.00000000000989   49-102   TNF receptor-like  
  0.00000000177   101-139,167-184   TNF receptor-like  
ENSRNOP00000027251   2.98e-17   25-77   TNF receptor-like  
  0.000000000000989   78-138   TNF receptor-like  
  0.0000000324   140-163   TNF receptor-like  
ENSRNOP00000029803   0.00000000212   27-81   TNF receptor-like  
  0.0000000255   80-132   TNF receptor-like  
ENSRNOP00000034356   0.00000000000318   5-40   BAFF receptor-like  
ENSRNOP00000035610   0.0000895   79-111   TNF receptor-like  
ENSRNOP00000042371   0.00000000000000126   101-144   TNF receptor-like  
  0.0000000000385   44-100   TNF receptor-like  
  0.00000000033   145-197   TNF receptor-like  
ENSRNOP00000051744   0.0000000000687   95-156   TNF receptor-like  
  0.000000989   51-93   TNF receptor-like  
ENSRNOP00000052022   0.000000000000251   26-79   TNF receptor-like  
  0.00000000005   102-162   TNF receptor-like  
ENSRNOP00000052372   0.000000942   64-116   TNF receptor-like  
ENSRNOP00000059580   5.05e-16   40-94   TNF receptor-like  
  0.000000000419   93-158   TNF receptor-like  
  0.0000754   142-199   TNF receptor-like  
ENSRNOP00000061091   0.00000000000576   103-160   TNF receptor-like  
  0.0000000000107   32-80   TNF receptor-like  
ENSRNOP00000061285   0.0000000000512   26-81   TNF receptor-like  
  0.000000565   80-119   TNF receptor-like  
  0.000188   119-149   TNF receptor-like  
ENSRNOP00000062604   0.00000000273   37-90   TNF receptor-like  
  0.00153   99-150   TNF receptor-like  
ENSRNOP00000063335   0.0000000000253   26-69   TNF receptor-like  
  0.0151   108-141   TNF receptor-like  
 
Weak hits:
ENSRNOP00000000451   0.00589   520-565   TNF receptor-like  
ENSRNOP00000003545   0.0212   428-475   TNF receptor-like  
ENSRNOP00000003660   0.00487   465-513   TNF receptor-like  
ENSRNOP00000009241   0.00942   1441-1492   TNF receptor-like  
ENSRNOP00000009535   0.0259   275-314   TNF receptor-like  
ENSRNOP00000012148   0.00282   518-565   TNF receptor-like  
ENSRNOP00000013385   0.008   494-538   TNF receptor-like  
ENSRNOP00000013778   0.0298   545-593   TNF receptor-like  
ENSRNOP00000013805   0.0141   523-571   TNF receptor-like  
ENSRNOP00000018267   0.00785   506-547   TNF receptor-like  
ENSRNOP00000019268   0.000549   42-91   TNF receptor-like  
  0.00908   108-139   TNF receptor-like  
ENSRNOP00000020321   0.04   472-519   TNF receptor-like  
ENSRNOP00000022059   0.00918   506-552   TNF receptor-like  
ENSRNOP00000029005   0.00219   189-221   TNF receptor-like  
ENSRNOP00000029064   0.0306   339-386   TNF receptor-like  
ENSRNOP00000030140   0.012   433-480   TNF receptor-like  
ENSRNOP00000032535   0.0447   520-565   TNF receptor-like  
ENSRNOP00000032760   0.0212   327-372   TNF receptor-like  
ENSRNOP00000032871   0.0141   512-548   TNF receptor-like  
ENSRNOP00000035757   0.0221   522-567   TNF receptor-like  
ENSRNOP00000036110   0.00216   34-67   TNF receptor-like  
ENSRNOP00000037039   0.0377   293-340   TNF receptor-like  
ENSRNOP00000037362   0.0589   440-486   TNF receptor-like  
ENSRNOP00000039054   0.00155   447-493   TNF receptor-like  
ENSRNOP00000039201   0.0226   520-565   TNF receptor-like  
ENSRNOP00000039258   0.0167   507-558   TNF receptor-like  
ENSRNOP00000040457   0.0942   437-483   TNF receptor-like  
ENSRNOP00000041059   0.00836   510-559   TNF receptor-like  
ENSRNOP00000042077   0.00918   508-557   TNF receptor-like  
ENSRNOP00000042646   0.00113   520-566   TNF receptor-like  
ENSRNOP00000042802   0.00141   504-557   TNF receptor-like  
ENSRNOP00000043611   0.00235   519-568   TNF receptor-like  
ENSRNOP00000043829   0.00377   509-556   TNF receptor-like  
ENSRNOP00000044050   0.00113   504-557   TNF receptor-like  
ENSRNOP00000044230   0.00377   513-563   TNF receptor-like  
ENSRNOP00000044551   0.000541   504-557   TNF receptor-like  
ENSRNOP00000044564   0.073   254-300   TNF receptor-like  
ENSRNOP00000044599   0.00353   504-557   TNF receptor-like  
ENSRNOP00000045040   0.00942   509-558   TNF receptor-like  
ENSRNOP00000045053   0.00847   510-556   TNF receptor-like  
ENSRNOP00000045537   0.00518   326-373   TNF receptor-like  
ENSRNOP00000045687   0.00675   57-93   TNF receptor-like  
ENSRNOP00000046974   0.00127   503-554   TNF receptor-like  
ENSRNOP00000047460   0.0195   516-563   TNF receptor-like  
ENSRNOP00000047784   0.000942   513-559   TNF receptor-like  
ENSRNOP00000048313   0.0235   446-480   TNF receptor-like  
ENSRNOP00000048748   0.0353   464-509   TNF receptor-like  
ENSRNOP00000049930   0.0148   506-559   TNF receptor-like  
ENSRNOP00000049950   0.00221   516-562   TNF receptor-like  
ENSRNOP00000050214   0.00127   513-559   TNF receptor-like  
ENSRNOP00000050611   0.0188   507-555   TNF receptor-like  
ENSRNOP00000050721   0.0184   516-563   TNF receptor-like  
ENSRNOP00000050842   0.0353   454-501   TNF receptor-like  
ENSRNOP00000050892   0.00589   509-558   TNF receptor-like  
ENSRNOP00000051358   0.00863   510-545   TNF receptor-like  
ENSRNOP00000051379   0.0108   512-559   TNF receptor-like  
ENSRNOP00000058605   0.00259   309-361   TNF receptor-like  
ENSRNOP00000058765   0.0235   60-93   TNF receptor-like  
ENSRNOP00000059639   0.0636   519-565   TNF receptor-like  
ENSRNOP00000063251   0.000549   42-91   TNF receptor-like  
  0.00908   108-139   TNF receptor-like  
ENSRNOP00000063731   0.0022   34-67   TNF receptor-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   36495 36495
No Yes Homo sapiens 76_38 Human 153 80
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 46 20
No Yes Gorilla gorilla 76_3.1 Western gorilla 66 31
No Yes Pongo abelii 76_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 38 20
No Yes Papio anubis 76 Olive baboon 53 24
No Yes Macaca mulatta 76_1 Rhesus monkey 74 35
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 93 48
No Yes Otolemur garnettii 76_3 Small-eared galago 40 19
No Yes Microcebus murinus 76_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 76_5.0 Norway rat 47 26
No Yes Mus musculus 76_38 House mouse 88 53
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 42 20
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 37 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 49 24
No Yes Oryctolagus cuniculus 76_2 Rabbit 37 20
No Yes Ochotona princeps 76 American pika 29 15
No Yes Tupaia belangeri 76 Northern tree shrew 26 15
No Yes Sus scrofa 76_10.2 Pig 78 40
No Yes Bos taurus 76_3.1 Cattle 53 24
No Yes Ovis aries 76_3.1 Sheep 42 23
No Yes Vicugna pacos 76_1 Alpaca 10 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 76_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 76_1 Giant panda 42 20
No Yes Canis familiaris 76_3.1 Dog 54 27
No Yes Felis catus 76_6.2 Domestic cat 42 22
No Yes Equus caballus 76_2 Horse 49 23
No Yes Myotis lucifugus 76_2.0 Little brown bat 51 23
No Yes Pteropus vampyrus 76_1 Large flying fox 35 20
No Yes Sorex araneus 76_1 European shrew 8 6
No Yes Erinaceus europaeus 76 Western European hedgehog 13 9
No Yes Procavia capensis 76_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 76_3 African savanna elephant 57 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 44 21
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 52 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 44 22
No Yes Ornithorhynchus anatinus 76_5 Platypus 35 18
No Yes Saccoglossus kowalevskii v3.0   30 21
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 76_2 Turkey 37 19
No Yes Gallus gallus 76_4 Chicken 32 18
No Yes Anas platyrhynchos 76_1.0 Mallard 38 18
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 32 18
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 42 22
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 34 19
No Yes Anolis carolinensis 76_2.0 Green anole 28 15
No Yes Xenopus laevis African clawed frog 57 26
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 31 15
No Yes Latimeria chalumnae 76_1 Coelacanth 45 24
No Yes Lepisosteus oculatus 76 Spotted gar 53 30
No Yes Gadus morhua 76_1 Atlantic cod 84 40
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 16
No Yes Takifugu rubripes 76_4 Torafugu 87 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 47 26
No Yes Oryzias latipes 76_1 Japanese medaka 46 24
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 49 27
No Yes Poecilia formosa 76 Amazon molly 52 26
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 76 34
No Yes Astyanax mexicanus 76 Mexican tetra 49 24
No Yes Danio rerio 76_9 Zebrafish 94 44
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 8 6
No Yes Adineta vaga   1 1
No Yes Octopus bimaculoides 280   3 2
No Yes Crassostrea gigas 22 Pacific oyster 9 7
No Yes Lottia gigantea Owl limpet 30 17
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   6 4
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Daphnia pulex Common water flea 2 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Pristionchus pacificus   1 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   2 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   8 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 8
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   76 37
No Yes Monosiga brevicollis   21 13
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanophora paradoxa   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Tetrahymena thermophila SB210 1   5 5
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Sorangium cellulosum 'So ce 56'   3 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 47 22
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 136 74
No Yes Homo sapiens (NCBI version) Human 69 33
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 45 23
No Yes Homo sapiens 69_37 Human 52 24
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 45 19
No Yes Gorilla gorilla 69_3.1 Western gorilla 47 22
No Yes Pongo abelii 69_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 38 20
No Yes Macaca mulatta 69_1 Rhesus monkey 47 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 44 22
No Yes Otolemur garnettii 69_3 Small-eared galago 38 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 69_3.4 Norway rat 46 25
No Yes Mus musculus 69_38 House mouse 45 23
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 36 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 23
No Yes Oryctolagus cuniculus 69_2 Rabbit 34 19
No Yes Ochotona princeps 69 American pika 29 15
No Yes Tupaia belangeri 69 Northern tree shrew 26 15
No Yes Sus scrofa 69_10.2 Pig 51 24
No Yes Bos taurus 69_3.1 Cattle 48 22
No Yes Vicugna pacos 69_1 Alpaca 10 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 69_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 69_1 Giant panda 39 18
No Yes Canis familiaris 69_3.1 Dog 39 19
No Yes Felis catus 69 Domestic cat 31 17
No Yes Equus caballus 69_2 Horse 42 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 49 22
No Yes Pteropus vampyrus 69_1 Large flying fox 35 20
No Yes Sorex araneus 69_1 European shrew 8 6
No Yes Erinaceus europaeus 69 Western European hedgehog 13 9
No Yes Procavia capensis 69_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 69_3 African savanna elephant 41 21
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 7
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 42 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 33 18
No Yes Ornithorhynchus anatinus 69_5 Platypus 31 16
No Yes Petromyzon marinus 69_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 69_2 Turkey 26 14
No Yes Gallus gallus 69_2 Chicken 31 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 29 16
No Yes Anolis carolinensis 69_2.0 Green anole 22 11
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 25 12
No Yes Latimeria chalumnae 69_1 Coelacanth 37 20
No Yes Gadus morhua 69_1 Atlantic cod 34 17
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 31 15
No Yes Takifugu rubripes 69_4 Torafugu 32 15
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 38 20
No Yes Oryzias latipes 69_1 Japanese medaka 41 21
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 49 27
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 54 25
No Yes Danio rerio 69_9 Zebrafish 71 33
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16104 8391
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   1030 526
No Yes Uniprot 2018_03 genome   9605 5117
No Yes Global Ocean Sampling Expedition (GOS)   42 21
No Yes NCBI viral sequences (Viral)   85 54
No Yes PDB chains (SCOP 1.75) (PDB)   36 16
No Yes Protein Data Bank (all PDB sequenc)   411 229
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   739 703
No Yes TargetDB (Targets)   27 14
No Yes UniProt viral sequences (Viral)   451 308

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.