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  Home > Genomes > Pongo abelii 76_2 > Spermadhesin, CUB domain domains


Spermadhesin, CUB domain superfamily domain assignments
in
Pongo abelii 76_2

Assignment details

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Pongo abelii 76_2 has 156 significant domains in 55 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000001537   4.71e-38   30-141   Spermadhesin, CUB domain  
  8.9e-36   145-253   Spermadhesin, CUB domain  
  4.84e-34   256-370   Spermadhesin, CUB domain  
ENSPPYP00000001812   9.03e-35   1414-1522   Spermadhesin, CUB domain  
  1.05e-32   1937-2046   Spermadhesin, CUB domain  
  4.71e-32   716-830   Spermadhesin, CUB domain  
  8.77e-32   1760-1879   Spermadhesin, CUB domain  
  2.09e-31   552-656   Spermadhesin, CUB domain  
  3.01e-28   375-485   Spermadhesin, CUB domain  
  4.32e-28   65-173   Spermadhesin, CUB domain  
  2.75e-27   1234-1355   Spermadhesin, CUB domain  
  1.7e-26   2109-2216   Spermadhesin, CUB domain  
  3.27e-26   2289-2393   Spermadhesin, CUB domain  
  5.5e-26   1067-1176   Spermadhesin, CUB domain  
  7.85e-26   888-1009   Spermadhesin, CUB domain  
  1.31e-23   1582-1697   Spermadhesin, CUB domain  
  0.00000249   235-275   Spermadhesin, CUB domain  
ENSPPYP00000002193   2.49e-30   34-144   Spermadhesin, CUB domain  
  2.09e-20   200-290   Spermadhesin, CUB domain  
ENSPPYP00000002460   5.36e-38   932-1042   Spermadhesin, CUB domain  
  1.28e-36   1335-1451   Spermadhesin, CUB domain  
  1.31e-35   2574-2685   Spermadhesin, CUB domain  
  7.2e-35   589-701   Spermadhesin, CUB domain  
  1.44e-34   3038-3163   Spermadhesin, CUB domain  
  9.68e-34   1565-1678   Spermadhesin, CUB domain  
  2.22e-33   1683-1793   Spermadhesin, CUB domain  
  2.75e-33   1114-1222   Spermadhesin, CUB domain  
  4.45e-33   2920-3032   Spermadhesin, CUB domain  
  2.88e-32   3285-3390   Spermadhesin, CUB domain  
  1.44e-31   1454-1562   Spermadhesin, CUB domain  
  1.44e-31   2337-2449   Spermadhesin, CUB domain  
  2.62e-30   2221-2333   Spermadhesin, CUB domain  
  7.59e-30   3394-3505   Spermadhesin, CUB domain  
  1.07e-29   1802-1909   Spermadhesin, CUB domain  
  8.37e-29   1935-2034   Spermadhesin, CUB domain  
  2.22e-28   1223-1332   Spermadhesin, CUB domain  
  4.45e-27   824-927   Spermadhesin, CUB domain  
  1.14e-26   2036-2157   Spermadhesin, CUB domain  
  6.15e-26   2456-2572   Spermadhesin, CUB domain  
  2.22e-25   2799-2922   Spermadhesin, CUB domain  
  6.41e-25   469-585   Spermadhesin, CUB domain  
  1.16e-24   708-814   Spermadhesin, CUB domain  
  8.5e-21   2685-2804   Spermadhesin, CUB domain  
  1.44e-18   3169-3279   Spermadhesin, CUB domain  
  5.63e-16   1053-1115   Spermadhesin, CUB domain  
  0.0000000000000471   2156-2220   Spermadhesin, CUB domain  
ENSPPYP00000002562   1.83e-32   146-263   Spermadhesin, CUB domain  
  1.96e-32   34-141   Spermadhesin, CUB domain  
ENSPPYP00000002925   3.79e-37   619-729   Spermadhesin, CUB domain  
  2.36e-36   780-886   Spermadhesin, CUB domain  
  6.54e-36   463-572   Spermadhesin, CUB domain  
  3.01e-35   354-463   Spermadhesin, CUB domain  
  2.75e-29   910-1003   Spermadhesin, CUB domain  
ENSPPYP00000003127   6.54e-21   45-167   Spermadhesin, CUB domain  
ENSPPYP00000003174   9.29e-34   1347-1459   Spermadhesin, CUB domain  
  4.19e-33   1589-1698   Spermadhesin, CUB domain  
ENSPPYP00000003177   8.77e-22   6-112   Spermadhesin, CUB domain  
ENSPPYP00000003179   0.0000000000017   125-170   Spermadhesin, CUB domain  
ENSPPYP00000003181   3.01e-34   160-265   Spermadhesin, CUB domain  
  1.96e-18   53-144   Spermadhesin, CUB domain  
ENSPPYP00000003852   8.11e-33   123-239   Spermadhesin, CUB domain  
ENSPPYP00000004013   5.5e-25   887-995   Spermadhesin, CUB domain  
ENSPPYP00000004035   1.22e-29   431-543   Spermadhesin, CUB domain  
  3.27e-23   318-420   Spermadhesin, CUB domain  
ENSPPYP00000004370   1.57e-24   61-169   Spermadhesin, CUB domain  
ENSPPYP00000004543   1.57e-35   300-414   Spermadhesin, CUB domain  
  4.06e-33   144-253   Spermadhesin, CUB domain  
ENSPPYP00000004647   1.7e-29   339-446   Spermadhesin, CUB domain  
  1.57e-19   227-332   Spermadhesin, CUB domain  
ENSPPYP00000004806   4.19e-30   19-131   Spermadhesin, CUB domain  
  6.02e-24   174-287   Spermadhesin, CUB domain  
ENSPPYP00000004809   9.55e-30   23-141   Spermadhesin, CUB domain  
  7.98e-27   192-304   Spermadhesin, CUB domain  
ENSPPYP00000004811   4.06e-23   30-147   Spermadhesin, CUB domain  
ENSPPYP00000005012   0.000000000000107   416-486   Spermadhesin, CUB domain  
  0.0000000000017   808-900   Spermadhesin, CUB domain  
  0.00000103   333-410   Spermadhesin, CUB domain  
  0.00000106   937-1017   Spermadhesin, CUB domain  
ENSPPYP00000006417   4.45e-16   191-303   Spermadhesin, CUB domain  
  0.000000000536   35-134   Spermadhesin, CUB domain  
ENSPPYP00000008200   1.83e-19   453-563   Spermadhesin, CUB domain  
  0.00000000000000113   269-385   Spermadhesin, CUB domain  
  0.0000000000000824   99-217   Spermadhesin, CUB domain  
ENSPPYP00000008271   1.03e-33   43-158   Spermadhesin, CUB domain  
  6.15e-17   173-294   Spermadhesin, CUB domain  
ENSPPYP00000009125   2.62e-21   366-478   Spermadhesin, CUB domain  
  6.67e-20   549-655   Spermadhesin, CUB domain  
ENSPPYP00000010365   7.2e-32   49-153   Spermadhesin, CUB domain  
  9.94e-19   168-292   Spermadhesin, CUB domain  
ENSPPYP00000011003   3.93e-28   43-156   Spermadhesin, CUB domain  
  0.0000000000000536   249-367   Spermadhesin, CUB domain  
ENSPPYP00000011945   0.00000209   115-224   Spermadhesin, CUB domain  
ENSPPYP00000012083   1.96e-22   127-249   Spermadhesin, CUB domain  
ENSPPYP00000013009   2.36e-24   628-738   Spermadhesin, CUB domain  
  3.53e-20   451-562   Spermadhesin, CUB domain  
  0.000000000000432   278-394   Spermadhesin, CUB domain  
ENSPPYP00000013030   3.93e-25   211-318   Spermadhesin, CUB domain  
ENSPPYP00000013149   0.0000000000157   268-367   Spermadhesin, CUB domain  
  0.00000144   166-250   Spermadhesin, CUB domain  
ENSPPYP00000013150   0.0000000000144   268-367   Spermadhesin, CUB domain  
  0.00000131   166-250   Spermadhesin, CUB domain  
ENSPPYP00000013294   5.63e-24   797-905   Spermadhesin, CUB domain  
ENSPPYP00000014339   3.4e-38   134-247   Spermadhesin, CUB domain  
ENSPPYP00000014643   1.57e-33   148-266   Spermadhesin, CUB domain  
  1.83e-33   36-142   Spermadhesin, CUB domain  
ENSPPYP00000015155   0.000000000000955   1-94   Spermadhesin, CUB domain  
  0.0000000000105   103-204   Spermadhesin, CUB domain  
ENSPPYP00000015215   6.28e-32   78-187   Spermadhesin, CUB domain  
ENSPPYP00000015599   0.0000275   232-274   Spermadhesin, CUB domain  
  0.0314   557-600   Spermadhesin, CUB domain  
ENSPPYP00000015857   3.27e-36   33-143   Spermadhesin, CUB domain  
  2.88e-33   154-267   Spermadhesin, CUB domain  
ENSPPYP00000016096   9.55e-34   24-138   Spermadhesin, CUB domain  
  5.63e-32   184-296   Spermadhesin, CUB domain  
ENSPPYP00000016930   1.02e-21   53-162   Spermadhesin, CUB domain  
ENSPPYP00000016963   7.59e-38   760-866   Spermadhesin, CUB domain  
  4.19e-36   353-462   Spermadhesin, CUB domain  
  8.77e-36   599-709   Spermadhesin, CUB domain  
  3.53e-27   890-983   Spermadhesin, CUB domain  
  4.97e-25   467-552   Spermadhesin, CUB domain  
ENSPPYP00000017409   0.00000000017   53-177   Spermadhesin, CUB domain  
ENSPPYP00000018481   4.19e-22   712-820   Spermadhesin, CUB domain  
ENSPPYP00000018989   5.63e-25   40-149   Spermadhesin, CUB domain  
ENSPPYP00000019098   1.05e-31   39-146   Spermadhesin, CUB domain  
ENSPPYP00000019524   1.02e-35   228-341   Spermadhesin, CUB domain  
  8.24e-34   106-216   Spermadhesin, CUB domain  
ENSPPYP00000020508   8.77e-34   177-292   Spermadhesin, CUB domain  
  2.88e-32   875-981   Spermadhesin, CUB domain  
  3.14e-32   14-118   Spermadhesin, CUB domain  
  7.72e-32   1250-1370   Spermadhesin, CUB domain  
  2.09e-30   694-815   Spermadhesin, CUB domain  
  1.3e-26   534-637   Spermadhesin, CUB domain  
  4.19e-26   356-465   Spermadhesin, CUB domain  
  1.2e-22   1473-1566   Spermadhesin, CUB domain  
  8.77e-21   1042-1155   Spermadhesin, CUB domain  
  0.00000124   1154-1197   Spermadhesin, CUB domain  
ENSPPYP00000020510   1.18e-20   69-128   Spermadhesin, CUB domain  
ENSPPYP00000021104   1.7e-30   47-157   Spermadhesin, CUB domain  
  3.27e-26   259-370   Spermadhesin, CUB domain  
ENSPPYP00000021124   5.36e-35   1541-1649   Spermadhesin, CUB domain  
  9.55e-34   842-957   Spermadhesin, CUB domain  
  1.26e-32   199-301   Spermadhesin, CUB domain  
  3.14e-32   1889-1998   Spermadhesin, CUB domain  
  3.27e-32   679-783   Spermadhesin, CUB domain  
  2.88e-31   2227-2343   Spermadhesin, CUB domain  
  3.79e-31   2056-2176   Spermadhesin, CUB domain  
  2.09e-29   23-129   Spermadhesin, CUB domain  
  1.7e-28   1361-1477   Spermadhesin, CUB domain  
  2.49e-27   502-612   Spermadhesin, CUB domain  
  5.76e-26   1021-1130   Spermadhesin, CUB domain  
  2.62e-25   1194-1303   Spermadhesin, CUB domain  
  1.44e-24   1706-1821   Spermadhesin, CUB domain  
ENSPPYP00000022133   0.00000497   1275-1385   Spermadhesin, CUB domain  
  0.000051   1169-1254   Spermadhesin, CUB domain  
ENSPPYP00000023939   0.000000017   5-73   Spermadhesin, CUB domain  
ENSPPYP00000024571   7.2e-32   50-154   Spermadhesin, CUB domain  
  9.94e-19   169-293   Spermadhesin, CUB domain  
 
Weak hits:
ENSPPYP00000008814   0.00236   1102-1192   Spermadhesin, CUB domain  
  0.0183   2706-2795   Spermadhesin, CUB domain  
ENSPPYP00000018746   0.00593   43-126   Spermadhesin, CUB domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   194765 194765
No Yes Homo sapiens 76_38 Human 549 207
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 156 52
No Yes Gorilla gorilla 76_3.1 Western gorilla 240 78
No Yes Pongo abelii 76_2 Sumatran orangutan 156 55
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 174 54
No Yes Papio anubis 76 Olive baboon 142 57
No Yes Macaca mulatta 76_1 Rhesus monkey 300 105
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 314 109
No Yes Otolemur garnettii 76_3 Small-eared galago 156 52
No Yes Microcebus murinus 76_1 Gray mouse lemur 125 46
No Yes Rattus norvegicus 76_5.0 Norway rat 156 61
No Yes Mus musculus 76_38 House mouse 266 89
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 133 42
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 129 54
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 157 51
No Yes Cavia porcellus 76_3 Domestic guinea pig 145 52
No Yes Oryctolagus cuniculus 76_2 Rabbit 158 53
No Yes Ochotona princeps 76 American pika 133 47
No Yes Tupaia belangeri 76 Northern tree shrew 133 47
No Yes Sus scrofa 76_10.2 Pig 157 76
No Yes Bos taurus 76_3.1 Cattle 164 61
No Yes Ovis aries 76_3.1 Sheep 205 64
No Yes Vicugna pacos 76_1 Alpaca 114 39
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 149 49
No Yes Mustela putorius furo 76_1.0 Domestic ferret 167 54
No Yes Ailuropoda melanoleuca 76_1 Giant panda 178 56
No Yes Canis familiaris 76_3.1 Dog 219 77
No Yes Felis catus 76_6.2 Domestic cat 157 53
No Yes Equus caballus 76_2 Horse 304 67
No Yes Myotis lucifugus 76_2.0 Little brown bat 132 45
No Yes Pteropus vampyrus 76_1 Large flying fox 155 53
No Yes Sorex araneus 76_1 European shrew 103 34
No Yes Erinaceus europaeus 76 Western European hedgehog 135 44
No Yes Procavia capensis 76_1 Cape rock hyrax 130 44
No Yes Loxodonta africana 76_3 African savanna elephant 182 62
No Yes Echinops telfairi 76 Small Madagascar hedgehog 130 42
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 189 68
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 101 37
No Yes Macropus eugenii 76_1.0 Tammar wallaby 131 45
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 137 60
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 152 54
No Yes Ornithorhynchus anatinus 76_5 Platypus 140 63
No Yes Saccoglossus kowalevskii v3.0   623 240
No Yes Petromyzon marinus 76_7.0 Sea lamprey 80 30
No Yes Meleagris gallopavo 76_2 Turkey 143 61
No Yes Gallus gallus 76_4 Chicken 147 49
No Yes Anas platyrhynchos 76_1.0 Mallard 150 53
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 135 51
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 147 48
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 171 60
No Yes Anolis carolinensis 76_2.0 Green anole 135 44
No Yes Xenopus laevis African clawed frog 238 98
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 219 83
No Yes Latimeria chalumnae 76_1 Coelacanth 166 71
No Yes Lepisosteus oculatus 76 Spotted gar 215 73
No Yes Gadus morhua 76_1 Atlantic cod 166 59
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 256 95
No Yes Takifugu rubripes 76_4 Torafugu 616 235
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 195 66
No Yes Oryzias latipes 76_1 Japanese medaka 164 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 179 56
No Yes Poecilia formosa 76 Amazon molly 174 60
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 243 93
No Yes Astyanax mexicanus 76 Mexican tetra 184 71
No Yes Danio rerio 76_9 Zebrafish 276 104
No Yes Oikopleura dioica   168 103
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 203 66
No Yes Ciona intestinalis 76 Vase tunicate 132 71
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 606 293
No Yes Adineta vaga   32 27
No Yes Octopus bimaculoides 280   108 50
No Yes Crassostrea gigas 22 Pacific oyster 226 128
No Yes Lottia gigantea Owl limpet 146 79
No Yes Helobdella robusta   83 43
No Yes Capitella sp. I   188 119
No Yes Danaus plexippus OGS1.0 Monarch butterfly 80 33
No Yes Heliconius melpomene Postman butterfly 31 20
No Yes Bombyx mori Domestic silkworm 46 26
No Yes Nasonia vitripennis Jewel wasp 57 22
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 213 44
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 64 22
No Yes Linepithema humile v1.1 Argentine ant 74 29
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 57 32
No Yes Solenopsis invicta v.2.2.3 Red fire ant 61 28
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 68 25
No Yes Atta cephalotes v1.1   67 31
No Yes Camponotus floridanus v3.3 Florida carpenter ant 69 25
No Yes Lucilia cuprina Australian sheep blowfly 95 28
No Yes Drosophila grimshawi 1.3   102 32
No Yes Drosophila willistoni 1.3   93 32
No Yes Drosophila pseudoobscura 2.13   96 32
No Yes Drosophila persimilis 1.3   89 31
No Yes Drosophila suzukii   129 33
No Yes Drosophila yakuba 1.3   96 31
No Yes Drosophila simulans 1.3   63 29
No Yes Drosophila sechellia 1.3   81 30
No Yes Drosophila melanogaster 76_5 Fruit fly 150 48
No Yes Drosophila erecta 1.3   95 32
No Yes Drosophila ananassae 1.3   94 32
No Yes Drosophila virilis 1.2   93 31
No Yes Drosophila mojavensis 1.3   95 33
No Yes Megaselia scalaris 22   25 17
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 109 35
No Yes Culex pipiens quinquefasciatus Southern house mosquito 75 31
No Yes Anopheles darlingi 22 American malaria mosquito 60 19
No Yes Anopheles gambiae 49_3j African malaria mosquito 65 25
No Yes Tribolium castaneum 3.0 Red flour beetle 76 29
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 24
No Yes Acyrthosiphon pisum Pea aphid 92 16
No Yes Rhodnius prolixus 22   93 39
No Yes Daphnia pulex Common water flea 170 98
No Yes Strigamia maritima 22   104 39
No Yes Sarcoptes scabiei   63 27
No Yes Tetranychus urticae Two-spotted spider mite 109 48
No Yes Ixodes scapularis (Preliminary) Black-legged tick 94 44
No Yes Pristionchus pacificus   144 115
No Yes Meloidogyne incognita Southern root-knot nematode 56 27
No Yes Meloidogyne hapla   28 14
No Yes Onchocerca volvulus 22   62 23
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 74 26
No Yes Caenorhabditis japonica   79 39
No Yes Caenorhabditis brenneri   149 99
No Yes Caenorhabditis remanei   131 84
No Yes Caenorhabditis elegans 76_235 Roundworm 143 86
No Yes Caenorhabditis briggsae 2   108 61
No Yes Trichinella spiralis 22   94 30
No Yes Hymenolepis microstoma   13 4
No Yes Echinococcus multilocularis   14 5
No Yes Echinococcus granulosus   14 5
No Yes Taenia solium Pork tapeworm 9 7
No Yes Schistosoma mansoni   18 10
No Yes Mnemiopsis leidyi Sea walnut 18 10
No Yes Thelohanellus kitauei   2 2
No Yes Acropora digitifera v1.0   253 159
No Yes Nematostella vectensis 1.0 Starlet sea anemone 130 76
No Yes Hydra vulgaris   70 28
No Yes Amphimedon queenslandica   10 8
No Yes Trichoplax adhaerens   63 24
No Yes Proterospongia sp. ATCC 50818   6 4
No Yes Monosiga brevicollis   4 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   7 6
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Rhizomucor miehei CAU432   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Actinidia chinensis Hongyang   2 1
No Yes Amborella trichopoda 22   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   2 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Thecamonas trahens ATCC 50062   39 25
No Yes Bigelowiella natans CCMP2755 22   5 3
No Yes Cyanophora paradoxa   80 32
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium vexans DAOM BR484 22   3 2
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Symbiodinium minutum clade B1 v1.2   15 13
No Yes Trichomonas vaginalis   3 3
No Yes Guillardia theta CCMP2712 v1.0   20 18
No Yes Emiliania huxleyi CCMP1516   34 31
No Yes [Ruminococcus] obeum   1 1
No Yes Saprospira grandis str. Lewin   3 2
No Yes Flexibacter litoralis DSM 6794   3 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Fluviicola taffensis DSM 16823   4 4
No Yes Lacinutrix sp. 5H-3-7-4   2 2
No Yes Croceibacter atlanticus HTCC2559   4 2
No Yes Aequorivita sublithincola DSM 14238   2 2
No Yes Zobellia galactanivorans   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   3 3
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   4 2
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   4 3
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 244 107
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 120 38
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 73 29
No Yes Ascaris suum Victoria/Ghent Pig roundworm 61 24
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 136 80
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Nonlabens dokdonensis DSW-6   4 4
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   5 4
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 594 229
No Yes Homo sapiens (NCBI version) Human 274 99
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 162 54
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 59 22
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 55 35
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 40 15
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Homo sapiens 69_37 Human 167 55
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 156 52
No Yes Gorilla gorilla 69_3.1 Western gorilla 160 55
No Yes Pongo abelii 69_2 Sumatran orangutan 152 53
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 153 50
No Yes Macaca mulatta 69_1 Rhesus monkey 168 58
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 156 53
No Yes Otolemur garnettii 69_3 Small-eared galago 156 52
No Yes Microcebus murinus 69_1 Gray mouse lemur 125 46
No Yes Rattus norvegicus 69_3.4 Norway rat 132 51
No Yes Mus musculus 69_38 House mouse 154 53
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 133 42
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 115 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 141 49
No Yes Oryctolagus cuniculus 69_2 Rabbit 127 51
No Yes Ochotona princeps 69 American pika 133 47
No Yes Tupaia belangeri 69 Northern tree shrew 133 47
No Yes Sus scrofa 69_10.2 Pig 126 57
No Yes Bos taurus 69_3.1 Cattle 153 55
No Yes Vicugna pacos 69_1 Alpaca 114 39
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 149 49
No Yes Mustela putorius furo 69_1.0 Domestic ferret 153 52
No Yes Ailuropoda melanoleuca 69_1 Giant panda 138 49
No Yes Canis familiaris 69_3.1 Dog 156 53
No Yes Felis catus 69 Domestic cat 112 42
No Yes Equus caballus 69_2 Horse 151 48
No Yes Myotis lucifugus 69_2.0 Little brown bat 131 44
No Yes Pteropus vampyrus 69_1 Large flying fox 155 53
No Yes Sorex araneus 69_1 European shrew 103 34
No Yes Erinaceus europaeus 69 Western European hedgehog 135 44
No Yes Procavia capensis 69_1 Cape rock hyrax 130 44
No Yes Loxodonta africana 69_3 African savanna elephant 140 47
No Yes Echinops telfairi 69 Small Madagascar hedgehog 130 42
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 115 47
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 101 37
No Yes Macropus eugenii 69_1.0 Tammar wallaby 131 45
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 121 49
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 151 53
No Yes Ornithorhynchus anatinus 69_5 Platypus 136 61
No Yes Petromyzon marinus 69_7.0 Sea lamprey 79 29
No Yes Meleagris gallopavo 69_2 Turkey 118 50
No Yes Gallus gallus 69_2 Chicken 137 45
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 131 48
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 146 50
No Yes Anolis carolinensis 69_2.0 Green anole 131 44
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 191 68
No Yes Latimeria chalumnae 69_1 Coelacanth 144 62
No Yes Gadus morhua 69_1 Atlantic cod 165 58
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 176 70
No Yes Takifugu rubripes 69_4 Torafugu 154 61
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 175 57
No Yes Oryzias latipes 69_1 Japanese medaka 137 46
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 179 56
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 194 63
No Yes Danio rerio 69_9 Zebrafish 164 69
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 91 36
No Yes Ciona intestinalis 69 Vase tunicate 131 70
No Yes Drosophila melanogaster 69_5 Fruit fly 98 29
No Yes Caenorhabditis elegans 69_215 Roundworm 121 70
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   6 6
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   2 1
No Yes Combined (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   8 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   81204 31567
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Protozoadb 2010_08 (Protozoadb)   9 9
No Yes Sludge/US, Phrap Assembly (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   6977 2935
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   58517 26023
No Yes Global Ocean Sampling Expedition (GOS)   118 110
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   8 7
No Yes Protein Data Bank (all PDB sequenc)   106 66
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   174 174
No Yes TargetDB (Targets)   125 63
No Yes UniProt viral sequences (Viral)   3 3

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.