SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Cavia porcellus 76_3 > FnI-like domain domains


FnI-like domain superfamily domain assignments
in
Cavia porcellus 76_3

Assignment details

(show help)


Cavia porcellus 76_3 has 96 significant domains in 37 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000746   0.0000000000000481   32-91   VWC domain  
ENSCPOP00000000875   0.000000000418   268-331   VWC domain  
  0.0000000023   688-760   VWC domain  
  0.000983   333-397   VWC domain  
ENSCPOP00000002004   0.00000000000000282   118-187   VWC domain  
  0.0000000009   245-320   VWC domain  
  0.00000000481   60-126   VWC domain  
  0.00000523   23-67   VWC domain  
  0.00000534   197-251   VWC domain  
ENSCPOP00000002642   0.0000586   93-157   VWC domain  
ENSCPOP00000003009   0.0000000000000534   30-88   VWC domain  
ENSCPOP00000003194   0.000000000335   210-274   VWC domain  
  0.000366   152-212   Fibronectin type I module  
  0.0638   277-322   Fibronectin type I module  
ENSCPOP00000004344   0.0000345   135-176   VWC domain  
ENSCPOP00000004385   0.0000000000000188   490-559   VWC domain  
  0.00000000000009   1116-1188   VWC domain  
  0.000000000000115   142-204   VWC domain  
  0.000000000000241   317-382   VWC domain  
  0.00000000000691   872-939   VWC domain  
  0.0000000000188   204-263   VWC domain  
  0.0000000000387   753-819   VWC domain  
  0.0000000000429   930-996   VWC domain  
  0.000000000126   265-324   VWC domain  
  0.000000000523   435-498   VWC domain  
  0.000000000795   988-1064   VWC domain  
  0.00000000429   375-429   Fibronectin type I module  
  0.00000000691   549-610   VWC domain  
  0.0000000126   703-749   Fibronectin type I module  
  0.0000000136   608-664   VWC domain  
  0.000000046   812-869   Fibronectin type I module  
  0.00000157   1076-1123   VWC domain  
  0.00000827   98-139   VWC domain  
ENSCPOP00000006047   0.000000000000523   115-182   VWC domain  
  0.00000000000349   259-326   VWC domain  
  0.0000000000837   36-103   VWC domain  
ENSCPOP00000006162   0.00000000000596   35-95   VWC domain  
ENSCPOP00000006182   0.00000000000000262   39-98   VWC domain  
ENSCPOP00000006233   0.0000293   227-268   VWC domain  
ENSCPOP00000006379   0.0000000000000103   250-316   VWC domain  
  0.0000000000544   109-176   VWC domain  
  0.000000000303   32-97   VWC domain  
ENSCPOP00000006631   0.0000000000000293   668-729   VWC domain  
  0.000000241   746-815   VWC domain  
  0.000000617   11-89   VWC domain  
  0.0000659   835-898   VWC domain  
ENSCPOP00000008438   0.0000000000000324   716-780   VWC domain  
  0.000000000000167   304-364   VWC domain  
  0.00000000000345   582-639   VWC domain  
  0.000000000009   223-296   VWC domain  
  0.000000000178   656-714   VWC domain  
  0.00022   509-569   VWC domain  
ENSCPOP00000008922   0.00000000000565   665-733   VWC domain  
  0.000000000136   615-674   VWC domain  
  0.00000000167   480-548   VWC domain  
  0.00000000178   370-428   VWC domain  
  0.0000000188   421-484   VWC domain  
  0.0000000816   554-612   VWC domain  
ENSCPOP00000009088   0.00000382   98-163   Fibronectin type I module  
ENSCPOP00000010069   0.0000000000023   1416-1474   VWC domain  
ENSCPOP00000010877   0.0000262   88-153   Fibronectin type I module  
ENSCPOP00000011528   0.000000000000017   2341-2384   Fibronectin type I module  
  0.0000000000000209   559-605   Fibronectin type I module  
  0.000000000000034   517-561   Fibronectin type I module  
  0.000000000000127   231-274   Fibronectin type I module  
  0.00000000000017   474-513   Fibronectin type I module  
  0.000000000000389   94-139   Fibronectin type I module  
  0.000000000000628   185-228   Fibronectin type I module  
  0.000000000000703   2296-2339   Fibronectin type I module  
  0.00000000000249   50-91   Fibronectin type I module  
  0.00000000000807   140-183   Fibronectin type I module  
  0.0000000000366   2384-2425   Fibronectin type I module  
  0.00000000012   308-346   Fibronectin type I module  
ENSCPOP00000011550   0.00000000000023   110-181   VWC domain  
  0.0000000000586   45-118   VWC domain  
  0.0000000000816   184-244   VWC domain  
  0.0000000209   237-308   VWC domain  
  0.00000732   331-385   VWC domain  
  0.0000178   3-53   VWC domain  
ENSCPOP00000011610   0.0000000000105   267-333   VWC domain  
  0.00000429   334-392   VWC domain  
ENSCPOP00000012167   0.00000000178   103-173   VWC domain  
  0.00398   51-111   Fibronectin type I module  
  0.0241   172-217   VWC domain  
ENSCPOP00000013317   0.000000000000324   317-375   VWC domain  
ENSCPOP00000013464   0.0000764   315-362   VWC domain  
  0.00115   783-832   Fibronectin type I module  
ENSCPOP00000013681   0.0000000387   2921-3002   VWC domain  
  0.00000408   2653-2733   VWC domain  
  0.0000146   977-1017   Fibronectin type I module  
  0.000209   4205-4268   VWC domain  
  0.000429   1966-2029   Fibronectin type I module  
  0.0023   526-566   Fibronectin type I module  
ENSCPOP00000014346   0.0000733   203-243   Fibronectin type I module  
ENSCPOP00000014836   0.0000000000000188   100-158   VWC domain  
ENSCPOP00000016303   0.0000000286   97-169   Fibronectin type I module  
ENSCPOP00000016609   0.00000157   338-385   VWC domain  
  0.00000847   807-856   Fibronectin type I module  
  0.000596   704-746   Fibronectin type I module  
ENSCPOP00000016635   3.35e-19   37-85   Fibronectin type I module  
ENSCPOP00000017141   0.000000314   581-665   VWC domain  
ENSCPOP00000017193   0.00000000000157   318-376   VWC domain  
ENSCPOP00000018163   0.00000000356   92-167   VWC domain  
  0.00000408   44-98   VWC domain  
  0.00167   2-34   VWC domain  
ENSCPOP00000018258   0.0000105   82-148   VWC domain  
ENSCPOP00000019350   0.000022   382-453   VWC domain  
  0.00523   748-804   Fibronectin type I module  
  0.0105   858-898   VWC domain  
  0.0209   1219-1261   Fibronectin type I module  
ENSCPOP00000019462   0.0000000034   115-185   Fibronectin type I module  
 
Weak hits:
ENSCPOP00000000822   0.000136   2570-2651   VWC domain  
  0.000994   826-868   VWC domain  
  0.0101   699-740   VWC domain  
  0.0126   2424-2500   VWC domain  
ENSCPOP00000002456   0.00157   264-329   VWC domain  
ENSCPOP00000002554   0.000408   942-988   VWC domain  
ENSCPOP00000014866   0.00115   370-411   Fibronectin type I module  
  0.023   2085-2145   VWC domain  
ENSCPOP00000015349   0.000586   332-373   Fibronectin type I module  
ENSCPOP00000016184   0.00209   38-91   Fibronectin type I module  
ENSCPOP00000016271   0.000701   655-728   Fibronectin type I module  
  0.00429   597-660   VWC domain  
ENSCPOP00000020877   0.0022   759-821   Fibronectin type I module  
  0.0167   670-711   VWC domain  
  0.0272   312-359   Fibronectin type I module  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a FnI-like domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   105027 105027
No Yes Homo sapiens 76_38 Human 383 107
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 125 45
No Yes Pongo abelii 76_2 Sumatran orangutan 89 33
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 91 32
No Yes Papio anubis 76 Olive baboon 98 30
No Yes Macaca mulatta 76_1 Rhesus monkey 238 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 257 100
No Yes Otolemur garnettii 76_3 Small-eared galago 79 28
No Yes Microcebus murinus 76_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 76_5.0 Norway rat 125 42
No Yes Mus musculus 76_38 House mouse 258 68
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 87 32
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 31
No Yes Cavia porcellus 76_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 76_2 Rabbit 106 38
No Yes Ochotona princeps 76 American pika 63 25
No Yes Tupaia belangeri 76 Northern tree shrew 42 23
No Yes Sus scrofa 76_10.2 Pig 144 43
No Yes Bos taurus 76_3.1 Cattle 154 37
No Yes Ovis aries 76_3.1 Sheep 113 39
No Yes Vicugna pacos 76_1 Alpaca 44 21
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 76_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 76_1 Giant panda 110 42
No Yes Canis familiaris 76_3.1 Dog 144 52
No Yes Felis catus 76_6.2 Domestic cat 101 37
No Yes Equus caballus 76_2 Horse 146 47
No Yes Myotis lucifugus 76_2.0 Little brown bat 109 33
No Yes Pteropus vampyrus 76_1 Large flying fox 80 32
No Yes Sorex araneus 76_1 European shrew 36 20
No Yes Erinaceus europaeus 76 Western European hedgehog 39 18
No Yes Procavia capensis 76_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 76_3 African savanna elephant 110 42
No Yes Echinops telfairi 76 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 91 39
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 76_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 95 44
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 82 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 85 41
No Yes Saccoglossus kowalevskii v3.0   266 96
No Yes Petromyzon marinus 76_7.0 Sea lamprey 47 24
No Yes Meleagris gallopavo 76_2 Turkey 65 39
No Yes Gallus gallus 76_4 Chicken 82 30
No Yes Anas platyrhynchos 76_1.0 Mallard 65 31
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 68 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 76 37
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 70 35
No Yes Anolis carolinensis 76_2.0 Green anole 96 36
No Yes Xenopus laevis African clawed frog 225 64
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 162 50
No Yes Latimeria chalumnae 76_1 Coelacanth 114 49
No Yes Lepisosteus oculatus 76 Spotted gar 174 58
No Yes Gadus morhua 76_1 Atlantic cod 84 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 190 59
No Yes Takifugu rubripes 76_4 Torafugu 363 145
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 104 55
No Yes Oryzias latipes 76_1 Japanese medaka 110 48
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 106 39
No Yes Poecilia formosa 76 Amazon molly 113 45
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 161 55
No Yes Astyanax mexicanus 76 Mexican tetra 105 46
No Yes Danio rerio 76_9 Zebrafish 195 80
No Yes Oikopleura dioica   11 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 117 45
No Yes Ciona intestinalis 76 Vase tunicate 60 24
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 124 36
No Yes Adineta vaga   24 5
No Yes Octopus bimaculoides 280   555 83
No Yes Crassostrea gigas 22 Pacific oyster 121 40
No Yes Lottia gigantea Owl limpet 84 33
No Yes Helobdella robusta   7 5
No Yes Capitella sp. I   29 15
No Yes Danaus plexippus OGS1.0 Monarch butterfly 23 9
No Yes Heliconius melpomene Postman butterfly 20 7
No Yes Bombyx mori Domestic silkworm 16 10
No Yes Nasonia vitripennis Jewel wasp 27 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 13
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 21 8
No Yes Linepithema humile v1.1 Argentine ant 21 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 19 9
No Yes Solenopsis invicta v.2.2.3 Red fire ant 19 10
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 8
No Yes Atta cephalotes v1.1   22 10
No Yes Camponotus floridanus v3.3 Florida carpenter ant 24 8
No Yes Lucilia cuprina Australian sheep blowfly 23 9
No Yes Drosophila grimshawi 1.3   26 13
No Yes Drosophila willistoni 1.3   27 13
No Yes Drosophila pseudoobscura 2.13   23 13
No Yes Drosophila persimilis 1.3   25 11
No Yes Drosophila suzukii   23 9
No Yes Drosophila yakuba 1.3   25 13
No Yes Drosophila simulans 1.3   20 11
No Yes Drosophila sechellia 1.3   25 13
No Yes Drosophila melanogaster 76_5 Fruit fly 51 24
No Yes Drosophila erecta 1.3   27 13
No Yes Drosophila ananassae 1.3   27 14
No Yes Drosophila virilis 1.2   26 12
No Yes Drosophila mojavensis 1.3   28 14
No Yes Megaselia scalaris 22   7 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 12
No Yes Culex pipiens quinquefasciatus Southern house mosquito 29 15
No Yes Anopheles darlingi 22 American malaria mosquito 17 12
No Yes Anopheles gambiae 49_3j African malaria mosquito 24 11
No Yes Tribolium castaneum 3.0 Red flour beetle 29 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 25 11
No Yes Acyrthosiphon pisum Pea aphid 18 6
No Yes Rhodnius prolixus 22   29 10
No Yes Daphnia pulex Common water flea 30 18
No Yes Strigamia maritima 22   34 17
No Yes Sarcoptes scabiei   13 5
No Yes Tetranychus urticae Two-spotted spider mite 31 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 25 9
No Yes Pristionchus pacificus   9 4
No Yes Meloidogyne incognita Southern root-knot nematode 5 3
No Yes Meloidogyne hapla   7 2
No Yes Onchocerca volvulus 22   7 2
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 7 2
No Yes Caenorhabditis japonica   7 2
No Yes Caenorhabditis brenneri   6 2
No Yes Caenorhabditis remanei   7 3
No Yes Caenorhabditis elegans 76_235 Roundworm 31 8
No Yes Caenorhabditis briggsae 2   6 2
No Yes Trichinella spiralis 22   10 5
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 39 21
No Yes Acropora digitifera v1.0   23 15
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 12
No Yes Hydra vulgaris   10 6
No Yes Amphimedon queenslandica   7 4
No Yes Trichoplax adhaerens   30 4
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 153 60
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 28 19
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 25 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 24 6
No Yes Sorangium cellulosum So0157-2   4 1
No Yes Homo sapiens 75_37 (old version GRC) Human 363 114
No Yes Homo sapiens (NCBI version) Human 201 59
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 95 33
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Homo sapiens 69_37 Human 84 35
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 68 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 102 38
No Yes Pongo abelii 69_2 Sumatran orangutan 73 30
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 79 31
No Yes Macaca mulatta 69_1 Rhesus monkey 73 26
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 91 36
No Yes Otolemur garnettii 69_3 Small-eared galago 79 28
No Yes Microcebus murinus 69_1 Gray mouse lemur 66 27
No Yes Rattus norvegicus 69_3.4 Norway rat 90 34
No Yes Mus musculus 69_38 House mouse 94 33
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 67 29
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 81 30
No Yes Cavia porcellus 69_3 Domestic guinea pig 96 37
No Yes Oryctolagus cuniculus 69_2 Rabbit 91 34
No Yes Ochotona princeps 69 American pika 63 25
No Yes Tupaia belangeri 69 Northern tree shrew 42 23
No Yes Sus scrofa 69_10.2 Pig 84 29
No Yes Bos taurus 69_3.1 Cattle 92 32
No Yes Vicugna pacos 69_1 Alpaca 44 21
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 78 28
No Yes Mustela putorius furo 69_1.0 Domestic ferret 96 35
No Yes Ailuropoda melanoleuca 69_1 Giant panda 94 37
No Yes Canis familiaris 69_3.1 Dog 101 38
No Yes Felis catus 69 Domestic cat 48 24
No Yes Equus caballus 69_2 Horse 93 33
No Yes Myotis lucifugus 69_2.0 Little brown bat 71 28
No Yes Pteropus vampyrus 69_1 Large flying fox 80 32
No Yes Sorex araneus 69_1 European shrew 36 20
No Yes Erinaceus europaeus 69 Western European hedgehog 39 18
No Yes Procavia capensis 69_1 Cape rock hyrax 60 31
No Yes Loxodonta africana 69_3 African savanna elephant 87 31
No Yes Echinops telfairi 69 Small Madagascar hedgehog 60 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 47 26
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 39 17
No Yes Macropus eugenii 69_1.0 Tammar wallaby 40 21
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 85 36
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 33
No Yes Ornithorhynchus anatinus 69_5 Platypus 75 39
No Yes Petromyzon marinus 69_7.0 Sea lamprey 42 19
No Yes Meleagris gallopavo 69_2 Turkey 58 32
No Yes Gallus gallus 69_2 Chicken 62 30
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 66 32
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 65 32
No Yes Anolis carolinensis 69_2.0 Green anole 92 36
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 102 39
No Yes Latimeria chalumnae 69_1 Coelacanth 101 42
No Yes Gadus morhua 69_1 Atlantic cod 80 35
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 95 34
No Yes Takifugu rubripes 69_4 Torafugu 97 36
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 87 40
No Yes Oryzias latipes 69_1 Japanese medaka 91 35
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 106 39
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 105 41
No Yes Danio rerio 69_9 Zebrafish 120 51
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 52 18
No Yes Ciona intestinalis 69 Vase tunicate 49 21
No Yes Drosophila melanogaster 69_5 Fruit fly 26 12
No Yes Caenorhabditis elegans 69_215 Roundworm 7 2
No Yes NCBI 2017_08 genome   52215 16311
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 2
No Yes STRING v9.0.5 (STRING)   2925 1172
No Yes Uniprot 2018_03 genome   27002 10540
No Yes Global Ocean Sampling Expedition (GOS)   4 3
No Yes PDB chains (SCOP 1.75) (PDB)   13 9
No Yes Protein Data Bank (all PDB sequenc)   83 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   179 179
No Yes TargetDB (Targets)   39 21
No Yes UniProt viral sequences (Viral)   19 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.