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Retroviral matrix proteins superfamily domain assignments
in
Sus scrofa 76_10.2

Network of domain occurrence in all genomes


Assignment details

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Sus scrofa 76_10.2 has 16 significant domains in 16 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000019160   3.83e-43   1-103   MMLV matrix protein-like  
ENSSSCP00000019422   1.18e-42   1-103   MMLV matrix protein-like  
ENSSSCP00000020797   2.24e-42   1-103   MMLV matrix protein-like  
ENSSSCP00000021008   3.35e-43   1-103   MMLV matrix protein-like  
ENSSSCP00000021237   2.59e-42   1-103   MMLV matrix protein-like  
ENSSSCP00000022829   1.06e-23   4-98   MMLV matrix protein-like  
ENSSSCP00000022871   1e-42   1-103   MMLV matrix protein-like  
ENSSSCP00000023285   8.24e-23   4-98   MMLV matrix protein-like  
ENSSSCP00000023630   1.82e-19   9-90   MMLV matrix protein-like  
ENSSSCP00000024113   3.83e-43   1-103   MMLV matrix protein-like  
ENSSSCP00000024629   6.47e-40   2-98   MMLV matrix protein-like  
ENSSSCP00000024778   3.83e-43   1-103   MMLV matrix protein-like  
ENSSSCP00000025458   8.83e-28   4-100   MMLV matrix protein-like  
ENSSSCP00000025775   1e-24   8-100   MMLV matrix protein-like  
ENSSSCP00000026419   3.35e-43   1-103   MMLV matrix protein-like  
ENSSSCP00000026948   1.41e-18   1-63   MMLV matrix protein-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   85456 85456
No Yes Homo sapiens 76_38 Human 2 2
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Sus scrofa 76_10.2 Pig 16 16
No Yes Ovis aries 76_3.1 Sheep 43 43
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Felis catus 76_6.2 Domestic cat 66 65
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 11 11
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 5 5
No Yes Anolis carolinensis 76_2.0 Green anole 10 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 2
No Yes Trypanosoma congolense 2.4   3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 2 2
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 5 5
No Yes Anolis carolinensis 69_2.0 Green anole 2 2
No Yes NCBI 2017_08 genome   1011 1009
No Yes STRING v9.0.5 (STRING)   36 36
No Yes Uniprot 2018_03 genome   57530 57523
No Yes NCBI viral sequences (Viral)   56 56
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   56 56
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   129 129
No Yes TargetDB (Targets)   3 3
No Yes UniProt viral sequences (Viral)   26311 26305

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