Select to display Genome Domains Proteins No ALL 371480 371480 No Homo sapiens 76_38 Human 669 557 No Pan troglodytes 76_2.1.4 Chimpanzee 164 128 No Gorilla gorilla 76_3.1 Western gorilla 242 180 No Pongo abelii 76_2 Sumatran orangutan 164 126 No Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 176 139 No Papio anubis 76 Olive baboon 185 145 Yes Macaca mulatta 76_1 Rhesus monkey 267 213 No Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 371 296 No Otolemur garnettii 76_3 Small-eared galago 163 130 No Microcebus murinus 76_1 Gray mouse lemur 128 105 No Rattus norvegicus 76_5.0 Norway rat 170 141 No Mus musculus 76_38 House mouse 456 369 No Dipodomys ordii 76_1 Ord's kangaroo rat 121 101 No Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 154 120 No Heterocephalus glaber v1.7-2 Naked mole-rat 152 129 No Cavia porcellus 76_3 Domestic guinea pig 159 127 No Oryctolagus cuniculus 76_2 Rabbit 169 132 No Ochotona princeps 76 American pika 121 99 No Tupaia belangeri 76 Northern tree shrew 110 91 No Sus scrofa 76_10.2 Pig 181 149 No Bos taurus 76_3.1 Cattle 175 132 No Ovis aries 76_3.1 Sheep 195 153 No Vicugna pacos 76_1 Alpaca 87 72 No Tursiops truncatus 76_1 Bottlenose dolphin 147 118 No Mustela putorius furo 76_1.0 Domestic ferret 166 129 No Ailuropoda melanoleuca 76_1 Giant panda 174 135 No Canis familiaris 76_3.1 Dog 235 179 No Felis catus 76_6.2 Domestic cat 167 133 No Equus caballus 76_2 Horse 194 147 No Myotis lucifugus 76_2.0 Little brown bat 173 134 No Pteropus vampyrus 76_1 Large flying fox 154 124 No Sorex araneus 76_1 European shrew 100 81 No Erinaceus europaeus 76 Western European hedgehog 99 85 No Procavia capensis 76_1 Cape rock hyrax 143 113 No Loxodonta africana 76_3 African savanna elephant 244 193 No Echinops telfairi 76 Small Madagascar hedgehog 107 90 No Dasypus novemcinctus 76_2 Nine-banded armadillo 191 160 No Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 91 75 No Macropus eugenii 76_1.0 Tammar wallaby 120 99 No Sarcophilus harrisii 76_7.0 Tasmanian devil 199 156 No Monodelphis domestica 76_5 Gray short-tailed opossum 167 131 No Ornithorhynchus anatinus 76_5 Platypus 128 100 No Saccoglossus kowalevskii v3.0 291 229 No Petromyzon marinus 76_7.0 Sea lamprey 81 62 No Meleagris gallopavo 76_2 Turkey 167 133 No Gallus gallus 76_4 Chicken 189 147 No Anas platyrhynchos 76_1.0 Mallard 139 112 No Taeniopygia guttata 76_3.2.4 Zebra finch 170 128 No Ficedula albicollis 76_1.0 Collared flycatcher 145 117 No Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 156 126 No Anolis carolinensis 76_2.0 Green anole 150 116 No Xenopus laevis African clawed frog 202 178 No Xenopus tropicalis 76_4.2 Tropical clawed frog 175 140 No Latimeria chalumnae 76_1 Coelacanth 185 142 No Lepisosteus oculatus 76 Spotted gar 215 167 No Gadus morhua 76_1 Atlantic cod 180 140 No Tetraodon nigroviridis 76_8 Spotted green pufferfish 240 185 No Takifugu rubripes 76_4 Torafugu 607 471 No Gasterosteus aculeatus 76_1 Three-spined stickleback 228 177 No Oryzias latipes 76_1 Japanese medaka 206 159 No Xiphophorus maculatus 76_4.4.2 Southern platyfish 201 149 No Poecilia formosa 76 Amazon molly 210 154 No Oreochromis niloticus 76_1.0 Nile tilapia 278 219 No Astyanax mexicanus 76 Mexican tetra 200 158 No Danio rerio 76_9 Zebrafish 363 276 No Oikopleura dioica 56 51 No Ciona savignyi 76_2.0 Pacific transparent sea squirt 115 84 No Ciona intestinalis 76 Vase tunicate 68 59 No Strongylocentrotus purpuratus v3.1 Purple sea urchin 185 161 No Adineta vaga 245 190 No Octopus bimaculoides 280 172 147 No Crassostrea gigas 22 Pacific oyster 137 111 No Lottia gigantea Owl limpet 103 82 No Helobdella robusta 209 195 No Capitella sp. I 118 99 No Danaus plexippus OGS1.0 Monarch butterfly 91 73 No Heliconius melpomene Postman butterfly 65 53 No Bombyx mori Domestic silkworm 72 61 No Nasonia vitripennis Jewel wasp 70 50 No Apis mellifera 38.2d (Not maintained) Honey bee 132 100 No Harpegnathos saltator v3.3 Jerdon's jumping ant 81 65 No Linepithema humile v1.1 Argentine ant 92 72 No Pogonomyrmex barbatus v1.2 Red harvester ant 80 67 No Solenopsis invicta v.2.2.3 Red fire ant 72 60 No Acromyrmex echinatior v3.8 Panamanian leafcutter ant 86 66 No Atta cephalotes v1.1 86 65 No Camponotus floridanus v3.3 Florida carpenter ant 92 71 No Lucilia cuprina Australian sheep blowfly 106 90 No Drosophila grimshawi 1.3 89 69 No Drosophila willistoni 1.3 99 78 No Drosophila pseudoobscura 2.13 83 64 No Drosophila persimilis 1.3 78 63 No Drosophila suzukii 83 65 No Drosophila yakuba 1.3 79 62 No Drosophila simulans 1.3 64 58 No Drosophila sechellia 1.3 82 65 No Drosophila melanogaster 76_5 Fruit fly 204 157 No Drosophila erecta 1.3 84 65 No Drosophila ananassae 1.3 85 67 No Drosophila virilis 1.2 83 66 No Drosophila mojavensis 1.3 84 65 No Megaselia scalaris 22 31 23 No Aedes aegypti 55 (Not maintained) Yellow fever mosquito 107 91 No Culex pipiens quinquefasciatus Southern house mosquito 118 101 No Anopheles darlingi 22 American malaria mosquito 59 46 No Anopheles gambiae 49_3j African malaria mosquito 74 64 No Tribolium castaneum 3.0 Red flour beetle 97 78 No Pediculus humanus corporis Human body louse 82 62 No Acyrthosiphon pisum Pea aphid 88 73 No Rhodnius prolixus 22 82 73 No Daphnia pulex Common water flea 118 98 No Strigamia maritima 22 94 74 No Sarcoptes scabiei 54 42 No Tetranychus urticae Two-spotted spider mite 88 66 No Ixodes scapularis Black-legged tick 74 59 No Pristionchus pacificus 53 47 No Meloidogyne incognita Southern root-knot nematode 68 52 No Meloidogyne hapla 32 24 No Onchocerca volvulus 22 62 49 No Brugia malayi WS250 Agent of lymphatic filariasis 113 84 No Caenorhabditis japonica 61 53 No Caenorhabditis brenneri 103 85 No Caenorhabditis remanei 83 74 No Caenorhabditis elegans 76_235 Roundworm 122 104 No Caenorhabditis briggsae 2 67 57 No Trichinella spiralis 22 52 47 No Hymenolepis microstoma 83 63 No Echinococcus multilocularis 82 64 No Echinococcus granulosus 78 60 No Taenia solium Pork tapeworm 71 57 No Schistosoma mansoni 101 74 No Mnemiopsis leidyi Sea walnut 154 134 No Thelohanellus kitauei 22 20 No Acropora digitifera v1.0 92 81 No Nematostella vectensis 1.0 Starlet sea anemone 115 97 No Hydra vulgaris 98 73 No Amphimedon queenslandica 162 153 No Trichoplax adhaerens 67 55 No Proterospongia sp. ATCC 50818 67 57 No Monosiga brevicollis 51 47 No Sphaeroforma arctica JP610 69 58 No Capsaspora owczarzaki ATCC 30864 76 67 No Conidiobolus coronatus NRRL28638 v1.0 36 31 No Mortierella verticillata NRRL 6337 49 42 No Phycomyces blakesleeanus 58 52 No Rhizopus oryzae RA 99-880 48 41 No Mucor circinelloides 50 47 No Rhizomucor miehei CAU432 44 37 No Malassezia globosa CBS 7966 46 40 No Sporisorium reilianum 22 29 24 No Ustilago maydis 27 22 No Mixia osmundae IAM 14324 v1.0 23 21 No Cronartium quercuum f. sp. fusiforme G11 v1.0 25 23 No Puccinia graminis f. sp. tritici CRL 75-36-700-3 21 21 No Melampsora laricis-populina 21 21 No Rhodotorula graminis WP1 v1.0 23 22 No Sporobolomyces roseus IAM 13481 15 14 No Microbotryum violaceum 22 27 24 No Wallemia sebi v1.0 18 15 No Sphaerobolus stellatus v1.0 34 30 No Piloderma croceum F 1598 v1.0 34 30 No Serpula lacrymans var. lacrymans S7.9 21 19 No Coniophora puteana 33 30 No Hydnomerulius pinastri v2.0 32 29 No Paxillus rubicundulus Ve08.2h10 v1.0 32 29 No Pisolithus microcarpus 441 v1.0 41 38 No Pisolithus tinctorius Marx 270 v1.0 31 26 No Scleroderma citrinum Foug A v1.0 33 29 No Coprinopsis cinerea okayama7 130 v3 32 29 No Pleurotus ostreatus Oyster mushroom 28 27 No Amanita thiersii Skay4041 v1.0 30 26 No Amanita muscaria Koide v1.0 Fly agaric 29 25 No Galerina marginata v1.0 55 52 No Hebeloma cylindrosporum h7 v2.0 48 45 No Laccaria bicolor S238N-H82 50 48 No Agaricus bisporus var. bisporus 29 24 No Schizophyllum commune 31 28 No Stereum hirsutum FP-91666 SS1 v1.0 35 32 No Heterobasidion annosum 24 22 No Gloeophyllum trabeum v1.0 30 27 No Punctularia strigosozonata v1.0 25 24 No Sebacina vermifera MAFF 305830 v1.0 32 30 No Fomitiporia mediterranea v1.0 24 21 No Tulasnella calospora AL13/4D v1.0 31 28 No Postia placenta 31 29 No Wolfiporia cocos MD-104 SS10 v1.0 29 25 No Fomitopsis pinicola v1.0 36 32 No Fomitopsis pinicola FP-58527 SS1 v3.0 37 33 No Phanerochaete chrysosporium RP-78 2.1 21 19 No Dichomitus squalens 28 25 No Trametes versicolor v1.0 31 27 No Tremella mesenterica Witches' butter 26 22 No Daldinia eschscholzii EC12 v1.0 31 27 No Apiospora montagnei NRRL 25634 v1.0 30 26 No Magnaporthe poae ATCC 64411 22 25 21 No Magnaporthe grisea 70-15 27 23 No Podospora anserina 29 25 No Sporotrichum thermophile ATCC 42464 28 24 No Thielavia terrestris NRRL 8126 29 26 No Chaetomium globosum CBS 148.51 24 21 No Neurospora tetrasperma 27 22 No Neurospora discreta FGSC 8579 26 21 No Neurospora crassa OR74A 30 26 No Cryphonectria parasitica Chestnut blight fungus 28 25 No Verticillium albo-atrum VaMs.102 26 22 No Verticillium dahliae VdLs.17 24 21 No Acremonium alcalophilum v 1.0 26 22 No Glomerella graminicola 22 30 26 No Fusarium graminearum 25 23 No Nectria haematococca mpVI 27 24 No Fusarium oxysporum f. sp. lycopersici 4286 27 25 No Fusarium verticillioides 7600 26 23 No Trichoderma asperellum CBS 433.97 v1.0 32 28 No Trichoderma atroviride 30 27 No Trichoderma citrinoviride v1.0 29 25 No Trichoderma reesei 1.2 26 22 No Trichoderma virens Gv29-8 28 26 No Trichoderma longibrachiatum ATCC 18648 v1.0 28 25 No Trichoderma harzianum CBS 226.95 v1.0 34 30 No Amorphotheca resinae v1.0 Creosote fungus 31 27 No Botrytis cinerea B05.10 27 23 No Sclerotinia sclerotiorum 27 23 No Blumeria graminis 22 25 21 No Didymella exigua CBS 183.55 v1.0 28 24 No Leptosphaeria maculans 22 33 29 No Setosphaeria turcica v1.0 35 29 No Cochliobolus miyabeanus ATCC 44560 v1.0 35 31 No Cochliobolus victoriae FI3 v1.0 34 29 No Cochliobolus carbonum 26-R-13 v1.0 33 29 No Cochliobolus heterostrophus Southern corn leaf blight pathogen 26 22 No Alternaria brassicicola 29 25 No Cochliobolus lunatus m118 v2.0 31 27 No Pyrenophora teres f. teres 22 37 31 No Pyrenophora tritici-repentis 33 28 No Stagonospora nodorum 29 27 No Mycosphaerella graminicola IPO323 32 28 No Zasmidium cellare ATCC 36951 v1.0 40 36 No Dothistroma septosporum 44 40 No Septoria musiva v1.0 40 36 No Mycosphaerella fijiensis CIRAD86 29 26 No Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 36 32 No Paracoccidioides brasiliensis Pb18 25 21 No Coccidioides posadasii RMSCC 3488 28 24 No Coccidioides immitis RS 28 24 No Ajellomyces dermatitidis SLH14081 28 25 No Histoplasma capsulatum class NAmI strain WU24 23 19 No Microsporum canis CBS 113480 25 22 No Trichophyton equinum CBS 127.97 23 20 No Trichophyton verrucosum HKI 0517 23 20 No Arthroderma benhamiae CBS 112371 22 19 No Trichophyton tonsurans CBS 112818 26 23 No Trichophyton rubrum CBS 118892 28 24 No Uncinocarpus reesii 1704 23 20 No Aspergillus zonatus v1.0 28 24 No Penicillium chrysogenum Wisconsin 54-1255 31 27 No Penicillium chrysogenum v1.0 31 27 No Aspergillus acidus v1.0 30 26 No Aspergillus fumigatus Af293 29 25 No Aspergillus brasiliensis v1.0 27 24 No Aspergillus nidulans FGSC A4 29 26 No Aspergillus sydowii v1.0 28 24 No Aspergillus versicolor v1.0 29 25 No Aspergillus glaucus 32 28 No Aspergillus carbonarius ITEM 5010 31 27 No Neosartorya fischeri NRRL 181 29 25 No Aspergillus terreus NIH2624 29 25 No Aspergillus tubingensis v1.0 26 23 No Aspergillus wentii v1.0 31 27 No Aspergillus oryzae RIB40 23 20 No Aspergillus niger 22 28 25 No Aspergillus niger ATCC 1015 22 18 No Aspergillus flavus NRRL3357 29 25 No Aspergillus clavatus NRRL 1 29 25 No Penicillium marneffei ATCC 18224 34 30 No Tuber melanosporum Mel28 22 24 20 No Tuber melanosporum Vittad Perigord truffle 24 20 No Hansenula polymorpha v2.0 21 18 No Dekkera bruxellensis CBS 2499 v2.0 21 19 No Pichia membranifaciens v1.0 24 21 No Candida tanzawaensis NRRL Y-17324 v1.0 24 21 No Candida dubliniensis CD36 23 20 No Candida tropicalis MYA-3404 23 20 No Candida parapsilosis 23 20 No Candida albicans SC5314 23 20 No Lodderomyces elongisporus NRRL YB-4239 23 20 No Babjeviella inositovora NRRL Y-12698 v1.0 22 20 No Pichia stipitis CBS 6054 24 21 No Candida guilliermondii ATCC 6260 23 20 No Hyphopichia burtonii NRRL Y-1933 v1.0 22 19 No Debaromyces hansenii 23 20 No Wickerhamomyces anomalus 24 22 No Pichia pastoris GS115 22 19 No Hanseniaspora valbyensis NRRL Y-1626 v1.1 11 11 No Yarrowia lipolytica CLIB122 24 21 No Candida lusitaniae ATCC 42720 23 21 No Metschnikowia bicuspidata NRRL YB-4993 v1.0 21 19 No Vanderwaltozyma polyspora DSM 70294 22 20 No Candida glabrata CBS138 18 16 No Kluyveromyces thermotolerans CBS 6340 21 19 No Lachancea kluyveri 21 18 No Kluyveromyces waltii 21 18 No Ashbya gossypii ATCC 10895 24 20 No Zygosaccharomyces rouxii 23 20 No Saccharomyces mikatae MIT 22 20 No Saccharomyces paradoxus MIT 25 22 No Saccharomyces cerevisiae 76 Baker's yeast 24 21 No Saccharomyces bayanus MIT 21 18 No Kluyveromyces lactis 22 19 No Schizosaccharomyces cryophilus OY26 22 29 23 No Schizosaccharomyces octosporus yFS286 30 24 No Schizosaccharomyces japonicus yFS275 30 24 No Schizosaccharomyces pombe Fission yeast 31 25 No Catenaria anguillulae PL171 v1.0 31 28 No Allomyces macrogynus ATCC 38327 59 45 No Spizellomyces punctatus DAOM BR117 34 28 No Dictyostelium discoideum 44 36 No Dictyostelium purpureum 40 33 No Entamoeba dispar 1.2 19 18 No Entamoeba invadens 1.2 31 30 No Entamoeba histolytica 1 19 18 No Selaginella moellendorffii 156 145 No Pinus taeda Loblolly pine 92 80 No Picea abies Norway spruce 68 61 No Eucalyptus grandis v201 Rose gum 160 138 No Theobroma cacao B97-61/B2 v1 Cacao 110 95 No Gossypium raimondii v221 481 390 No Citrus clementina v165 168 139 No Citrus sinensis v154 Sweet orange 266 217 No Thellungiella halophila v173 131 111 No Brassica rapa Chiifu-401 1.2 Field mustard 171 141 No Capsella rubella v183 139 118 No Arabidopsis lyrata Lyrate rockcress 121 103 No Arabidopsis thaliana 10 Thale cress 159 137 No Carica papaya Papaya 88 78 No Medicago truncatula Barrel medic 237 195 No Phaseolus vulgaris v186 French bean 160 139 No Glycine max v109 Soybean 258 224 No Cucumis sativus v122 Cucumber 135 121 No Fragaria vesca Wild strawberry 116 100 No Malus domestica v196 Apple 195 168 No Prunus persica v139 Peach 106 91 No Linum usitatissimum v200 Flax 190 161 No Manihot esculenta v147 Cassava 160 137 No Populus trichocarpa v156 Black cottonwood 176 148 No Vitis vinifera Wine grape 96 82 No Mimulus guttatus v140 Spotted monkey flower 120 108 No Solanum lycopersicum v.2.3 Tomato 135 116 No Solanum tuberosum Potato 136 126 No Actinidia chinensis Hongyang 135 120 No Aquilegia coerulea v195 214 183 No Triticum urartu 22 99 86 No Triticum aestivum 22 Bread wheat 327 290 No Aegilops tauschii 22 104 92 No Brachypodium distachyon Stiff brome 161 140 No Oryza barthii 22 African wild rice 164 144 No Oryza meridionalis 22 181 152 No Oryza glumaepatula 22 204 178 No Oryza glaberrima African rice 112 100 No Oryza punctata 22 198 174 No Oryza nivara 22 183 160 No Oryza brachyantha 22 Malo sina 123 104 No Oryza sativa ssp. japonica 5.0 Japanese rice 152 136 No Oryza sativa v193 Rice 152 136 No Phyllostachys heterocycla var. pubescens Kikko-chiku 173 149 No Panicum virgatum v202 Switchgrass 243 214 No Setaria italica v164 Foxtail millet 165 141 No Zea mays subsp. mays Maize 236 210 No Zea mays v181 Maize 253 226 No Sorghum bicolor Sorghum 123 111 No Musa balbisiana Balbis banana 128 116 No Musa acuminata 22 Wild Malaysian banana 167 147 No Amborella trichopoda 22 101 88 No Physcomitrella patens 105 90 No Coccomyxa subellipsoidea sp. C-169 v2 37 31 No Asterochloris sp. Cgr/DA1pho v1.0 25 20 No Chlorella variabilis sp. NC64A 34 32 No Chlorella vulgaris 39 33 No Volvox carteri f. nagariensis 30 30 No Volvox carteri v199 22 20 No Chlamydomonas reinhardtii 4.0 52 49 No Ostreococcus sp. RCC809 21 20 No Ostreococcus lucimarinus CCE9901 22 20 No Ostreococcus tauri 18 15 No Bathycoccus prasinos 31 27 No Micromonas sp. RCC299 32 28 No Micromonas pusilla CCMP1545 v3.0 39 32 No Cyanidioschyzon merolae strain 10D 22 16 15 No Cyanidioschyzon merolae 16 15 No Porphyridium purpureum 02_2012 26 20 No Thecamonas trahens ATCC 50062 58 49 No Bigelowiella natans CCMP2755 22 69 65 No Giardia lamblia 2.3 5 5 No Cyanophora paradoxa 30 26 No Leishmania mexicana 2.4 28 26 No Leishmania major strain Friedlin 26 24 No Leishmania infantum JPCM5 2.4 25 23 No Leishmania braziliensis MHOM/BR/75/M2904 2.4 28 26 No Trypanosoma vivax 22 21 No Trypanosoma cruzi strain CL Brener 29 28 No Trypanosoma congolense 2.4 26 25 No Trypanosoma brucei gambiense v4.1 31 30 No Trypanosoma brucei TREU927 v4.1 31 30 No Ectocarpus siliculosus 98 80 No Aureococcus anophagefferens 49 44 No Albugo laibachii 22 214 194 No Pythium iwayamai DAOM BR242034 22 194 179 No Pythium arrhenomanes ATCC 12531 22 196 177 No Pythium ultimum v1.7-2 232 219 No Pythium aphanidermatum DAOM BR444 22 212 193 No Pythium irregulare DAOM BR486 22 241 221 No Pythium vexans DAOM BR484 22 230 204 No Phytophthora ramorum 1.1 Sudden oak death agent 239 228 No Phytophthora sojae 1.1 247 234 No Phytophthora infestans T30-4 254 237 No Phytophthora capsici 176 169 No Hyaloperonospora arabidopsidis 22 184 171 No Phaeodactylum tricornutum CCAP 1055/1 33 31 No Fragilariopsis cylindrus 63 59 No Thalassiosira pseudonana CCMP1335 43 36 No Perkinsus marinus ATCC 50983 49 43 No Paramecium tetraurelia 178 157 No Tetrahymena thermophila SB210 1 48 41 No Ichthyophthirius multifiliis strain G5 14 14 No Cryptosporidium hominis 16 13 No Cryptosporidium muris 20 15 No Cryptosporidium parvum Iowa II 22 14 No Neospora caninum 27 21 No Toxoplasma gondii VEG 25 18 No Toxoplasma gondii ME49 26 18 No Toxoplasma gondii GT1 25 18 No Babesia bovis T2Bo 22 16 No Theileria parva 15 11 No Theileria annulata 14 10 No Plasmodium falciparum 3D7 15 10 No Plasmodium vivax SaI-1 7.0 14 9 No Plasmodium knowlesi strain H 16 11 No Plasmodium yoelii ssp. yoelii 1 11 8 No Plasmodium chabaudi 14 9 No Plasmodium berghei ANKA 13 8 No Symbiodinium minutum clade B1 v1.2 42 38 No Naegleria gruberi 16 12 No Trichomonas vaginalis 38 29 No Guillardia theta CCMP2712 v1.0 48 41 No Emiliania huxleyi CCMP1516 110 99 No Acaryochloris marina MBIC11017 1 1 No Selenomonas ruminantium subsp. lactilytica TAM6421 1 1 No Thermaerobacter marianensis DSM 12885 1 1 No butyrate-producing bacterium SM4/1 1 1 No Thermodesulfatator indicus DSM 15286 1 1 No Thermodesulfobacterium sp. OPB45 1 1 No Candidatus Nitrospira defluvii 1 1 No Myxococcus xanthus DK 1622 1 1 No Myxococcus fulvus HW-1 1 1 No Thermogladius cellulolyticus 1633 1 1 No Ignisphaera aggregans DSM 17230 1 1 No Ignicoccus hospitalis KIN4/I 1 1 No Desulfurococcus fermentans DSM 16532 1 1 No Sulfolobus acidocaldarius DSM 639 1 1 No Thermofilum pendens Hrk 5 1 1 No Pyrobaculum sp. 1860 1 1 No Pyrobaculum calidifontis JCM 11548 1 1 No Pyrobaculum arsenaticum DSM 13514 1 1 No Thermoproteus uzoniensis 768-20 1 1 No Thermoproteus tenax Kra 1 2 2 No Methanocella arvoryzae MRE50 2 2 No Methanocella paludicola SANAE 2 2 No Methanosarcina acetivorans C2A 1 1 No Methanosarcina barkeri str. Fusaro 1 1 No Methanospirillum hungatei JF-1 1 1 No Archaeoglobus fulgidus DSM 4304 1 1 No Thermococcus sp. 4557 1 1 No Thermococcus kodakarensis KOD1 1 1 No Thermococcus gammatolerans EJ3 1 1 No Haloterrigena turkmenica DSM 5511 1 1 No Halomicrobium mukohataei DSM 12286 1 1 No Methanotorris igneus Kol 5 1 1 No Methanosphaera stadtmanae DSM 3091 1 1 No Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 268 216 No Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 143 111 No Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 92 79 No Ascaris suum Victoria/Ghent Pig roundworm 56 46 No Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 94 78 No Cryptococcus neoformans var. grubii H99 29 25 No Cryptococcus neoformans B-3501A 32 28 No Cryptococcus neoformans JEC21 34 30 No Paracoccidioides brasiliensis Pb01 25 22 No Paracoccidioides brasiliensis Pb03 27 23 No Coccidioides posadasii str. Silveira 26 23 No Coccidioides immitis RMSCC 3703 24 22 No Coccidioides immitis RMSCC 2394 26 23 No Coccidioides immitis H538.4 20 17 No Ajellomyces dermatitidis ER-3 28 24 No Histoplasma capsulatum H143 22 20 No Histoplasma capsulatum H88 26 24 No Histoplasma capsulatum G186AR 25 23 No Aspergillus fumigatus A1163 30 26 No Candida albicans WO-1 23 20 No Saccharomyces cerevisiae UC5 21 17 No Saccharomyces cerevisiae PW5 19 17 No Saccharomyces cerevisiae FL100 14 13 No Saccharomyces cerevisiae CLIB382 1 1 No Saccharomyces cerevisiae CLIB324 5 5 No Saccharomyces cerevisiae CBS7960 20 18 No Saccharomyces cerevisiae YJM269 23 19 No Saccharomyces cerevisiae T7 25 21 No Saccharomyces cerevisiae FostersB 15 13 No Saccharomyces cerevisiae FostersO 16 15 No Saccharomyces cerevisiae VL3 19 16 No Saccharomyces cerevisiae Vin13 19 17 No Saccharomyces cerevisiae LalvinQA23 20 18 No Saccharomyces cerevisiae AWRI796 16 14 No Saccharomyces cerevisiae Sigma1278b 24 21 No Saccharomyces cerevisiae W303 23 20 No Saccharomyces cerevisiae JAY291 25 21 No Saccharomyces cerevisiae AWRI1631 13 11 No Saccharomyces cerevisiae YPS163 7 7 No Saccharomyces cerevisiae M22 9 8 No Saccharomyces cerevisiae T73 12 10 No Saccharomyces cerevisiae CLIB215 17 16 No Saccharomyces cerevisiae Y10 10 9 No Saccharomyces cerevisiae YJM789 25 21 No Saccharomyces cerevisiae YJM789 25 21 No Saccharomyces cerevisiae RM11-1a 24 21 No Saccharomyces cerevisiae RM11-1a 24 21 No Saccharomyces cerevisiae SGD (SGD) Baker's yeast 24 21 No Schizosaccharomyces pombe 972h- 31 25 No Batrachochytrium dendrobatidis JEL423 30 25 No Batrachochytrium dendrobatidis JAM81 32 26 No Theobroma cacao Matina 1-6 v0.9 Cacao 111 97 No Hordeum vulgare 22 Domesticated barley 342 303 No Oryza sativa ssp. Indica (Subspecies) Long-grained rice 112 100 No Trypanosoma brucei Lister 427 v4.1 31 30 No Neospora caninum Nc-Liverpool 6.2 27 21 No Plasmodium falciparum HB3 15 10 No Plasmodium falciparum Dd2 11 6 No Arthrospira platensis NIES-39 1 1 No Ruminococcus champanellensis 18P13 1 1 No Clostridium saccharolyticum Clostridium cf. saccharolyticum K10 1 1 No Carnobacterium maltaromaticum LMA28 1 1 No Melissococcus plutonius ATCC 35311 1 1 No Desulfocapsa sulfexigens DSM 10523 3 3 No Myxococcus stipitatus DSM 14675 1 1 No Bradyrhizobium japonicum USDA 6 1 1 No Pseudomonas fluorescens F113 1 1 No Caldisphaera lagunensis DSM 15908 1 1 No Sulfolobus islandicus Y.G.57.14 1 1 No Sulfolobus acidocaldarius SUSAZ 1 1 No Sulfolobus acidocaldarius Ron12/I 1 1 No Methanomethylovorans hollandica DSM 15978 1 1 No Methanolobus psychrophilus R15 2 2 No Methanosarcina mazei Tuc01 1 1 No Methanoregula formicica Methanoregula formicicum SMSP 1 1 No Thermococcus sp. AM4 1 1 No Thermococcus sp. CL1 1 1 No Natronococcus occultus SP4 1 1 No Methanococcus maripaludis X1 1 1 No Methanococcus maripaludis C6 1 1 No Homo sapiens 75_37 (old version GRC) Human 764 633 No Homo sapiens Human 307 244 No Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 174 135 No Heliconius numata 11 11 No Loa loa v3.3 (Request) Eye worm 70 54 No Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 61 50 No Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 60 48 No Moniliophthora perniciosa FA553 7 7 No Encephalitozoon intestinalis 2 2 No Encephalitozoon cuniculi (endoparasite) 3 3 No Picea sitchensis Sitka spruce 8 8 No Lotus japonicus 84 76 No Malus x domestica (Duplicate) Apple 195 168 No Ricinus communis Castor bean 99 84 No Nicotiana benthamiana 0.4.4 (Early draft) 217 189 No Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 133 115 No Solanum lycopersicum v2.3 (Early assembly) Tomato 135 116 No Phoenix dactylifera Date palm 78 69 No Homo sapiens 69_37 Human 187 146 No Pan troglodytes 69_2.1.4 Chimpanzee 156 121 No Gorilla gorilla 69_3.1 Western gorilla 162 126 No Pongo abelii 69_2 Sumatran orangutan 155 120 No Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 159 125 No Macaca mulatta 69_1 Rhesus monkey 148 117 No Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 165 130 No Otolemur garnettii 69_3 Small-eared galago 159 127 No Microcebus murinus 69_1 Gray mouse lemur 128 105 No Rattus norvegicus 69_3.4 Norway rat 154 123 No Mus musculus 69_38 House mouse 176 133 No Dipodomys ordii 69_1 Ord's kangaroo rat 121 101 No Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 143 112 No Cavia porcellus 69_3 Domestic guinea pig 157 125 No Oryctolagus cuniculus 69_2 Rabbit 149 115 No Ochotona princeps 69 American pika 121 99 No Tupaia belangeri 69 Northern tree shrew 110 91 No Sus scrofa 69_10.2 Pig 143 118 No Bos taurus 69_3.1 Cattle 157 120 No Vicugna pacos 69_1 Alpaca 87 72 No Tursiops truncatus 69_1 Bottlenose dolphin 147 118 No Mustela putorius furo 69_1.0 Domestic ferret 166 129 No Ailuropoda melanoleuca 69_1 Giant panda 161 125 No Canis familiaris 69_3.1 Dog 163 129 No Felis catus 69 Domestic cat 106 91 No Equus caballus 69_2 Horse 158 122 No Myotis lucifugus 69_2.0 Little brown bat 168 130 No Pteropus vampyrus 69_1 Large flying fox 154 124 No Sorex araneus 69_1 European shrew 100 81 No Erinaceus europaeus 69 Western European hedgehog 99 85 No Procavia capensis 69_1 Cape rock hyrax 143 113 No Loxodonta africana 69_3 African savanna elephant 158 127 No Echinops telfairi 69 Small Madagascar hedgehog 107 90 No Dasypus novemcinctus 69_2 Nine-banded armadillo 96 82 No Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 91 75 No Macropus eugenii 69_1.0 Tammar wallaby 120 99 No Sarcophilus harrisii 69_7.0 Tasmanian devil 159 124 No Monodelphis domestica 69_5 Gray short-tailed opossum 160 125 No Ornithorhynchus anatinus 69_5 Platypus 120 92 No Petromyzon marinus 69_7.0 Sea lamprey 71 54 No Meleagris gallopavo 69_2 Turkey 150 118 No Gallus gallus 69_2 Chicken 160 126 No Taeniopygia guttata 69_3.2.4 Zebra finch 169 127 No Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 133 109 No Anolis carolinensis 69_2.0 Green anole 143 110 No Xenopus tropicalis 69_4.2 Tropical clawed frog 142 112 No Latimeria chalumnae 69_1 Coelacanth 142 109 No Gadus morhua 69_1 Atlantic cod 177 137 No Tetraodon nigroviridis 69_8 Spotted green pufferfish 194 149 No Takifugu rubripes 69_4 Torafugu 203 151 No Gasterosteus aculeatus 69_1 Three-spined stickleback 195 147 No Oryzias latipes 69_1 Japanese medaka 181 137 No Xiphophorus maculatus 69_4.4.2 Southern platyfish 201 149 No Oreochromis niloticus 69_1.0 Nile tilapia 199 155 No Danio rerio 69_9 Zebrafish 207 159 No Ciona savignyi 69_2.0 Pacific transparent sea squirt 50 39 No Ciona intestinalis 69 Vase tunicate 66 57 No Drosophila melanogaster 69_5 Fruit fly 83 64 No Caenorhabditis elegans 69_215 Roundworm 68 56 No Saccharomyces cerevisiae 69_4 Baker's yeast 24 21 No Arabidopsis thaliana 10 Thale cress 121 102 No 2_050719S (meta-genome) 1 1 No 4_050719Q (meta-genome) 1 1 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 2 2 No Atta cephalotes fungus garden (ACEF) (meta-genome) 2 2 No Bath Hot Springs, filamentous community (meta-genome) 1 1 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 3 3 No Dump bottom (Dump bottom) (meta-genome) 3 3 No Dump top (Dump top) (meta-genome) 4 4 No Endophytic microbiome from Rice (meta-genome) 1 1 No Fungus garden combined (combined) (meta-genome) 1 1 No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 1 1 No Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 2 2 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 2 2 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome) 1 1 No Human Gut Community Subject 8 (meta-genome) 1 1 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 1 1 No Marine anammox bioreactor enriched for Scalindua species (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 4 4 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 2 2 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 2 2 No NCBI 2017_08 genome 162508 126514 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 2 2 No Protozoadb 2010_08 (Protozoadb) 670 545 No Soil microbial communities from Minnesota Farm (meta-genome) 2 2 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 8 8 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 5 5 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 1 1 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 3 3 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 5 5 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 3 3 No Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 2 2 No STRING v9.0.5 (STRING) 9312 7677 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 2 2 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 1 1 No Uniprot 2018_03 genome 117615 97856 No Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 2 2 No Global Ocean Sampling Expedition (GOS) 224 219 No NCBI plasmid sequences (Plasmids) 1 1 No NCBI viral sequences (Viral) 10 10 No PDB chains (SCOP 1.75 ) (PDB) 26 26 No Protein Data Bank (all PDB sequenc) 734 700 No SCOP2 SCOPe CATH ECOD (all domain sequ) 908 908 No TargetDB 268 237 No UniProt 3 3
