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  Home > Genomes > Gadus morhua 69_1 > Ubiquitin-like domains


Ubiquitin-like superfamily domain assignments
in
Gadus morhua 69_1

Assignment details

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Gadus morhua 69_1 has 214 significant domains in 200 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGMOP00000000052   1.76e-27   58-221   Ras-binding domain, RBD  
ENSGMOP00000000163   3.91e-16   12-101   Ubiquitin-related  
ENSGMOP00000000319   0.00000014   226-304   Ubiquitin-related  
ENSGMOP00000000394   0.000062   742-821   Ras-binding domain, RBD  
ENSGMOP00000000577   0.0000000000000775   1-54   Ras-binding domain, RBD  
ENSGMOP00000000669   3.1e-24   239-377   UBX domain  
ENSGMOP00000000741   1.03e-40   106-283   Ras-binding domain, RBD  
  0.0414   18-53   Ubiquitin-related  
ENSGMOP00000000744   0.00000226   1-53   Ubiquitin-related  
ENSGMOP00000000911   0.000000000000868   272-351   UBX domain  
ENSGMOP00000000953   3.88e-16   275-372   UBX domain  
ENSGMOP00000001019   2.71e-30   537-653   UBX domain  
  0.0000000121   188-264   Ubiquitin-related  
  0.0000000226   96-177   Ubiquitin-related  
ENSGMOP00000001034   0.0000000000000437   7-94   Ubiquitin-related  
ENSGMOP00000001118   0.00000413   5-80   Ubiquitin-related  
ENSGMOP00000001322   0.0000964   324-394   Ras-binding domain, RBD  
ENSGMOP00000001533   1.47e-19   1-83   First domain of FERM  
ENSGMOP00000001561   4.96e-18   149-224   Ubiquitin-related  
ENSGMOP00000001640   0.000000000235   53-127   Ubiquitin-related  
ENSGMOP00000001721   5.81e-36   509-604   Ras-binding domain, RBD  
ENSGMOP00000001749   0.00000000000000101   32-87   First domain of FERM  
ENSGMOP00000001862   0.00000000161   211-281   Ras-binding domain, RBD  
ENSGMOP00000001966   1.63e-25   1-78   Ras-binding domain, RBD  
ENSGMOP00000002020   2.17e-21   4-79   DIX domain  
ENSGMOP00000002188   0.00000000827   684-727   Ras-binding domain, RBD  
ENSGMOP00000002273   2.79e-25   624-704   DIX domain  
ENSGMOP00000002337   8.27e-18   10-100   Ras-binding domain, RBD  
ENSGMOP00000002772   4.65e-22   4-103   Ras-binding domain, RBD  
  2.76e-21   208-300   Ras-binding domain, RBD  
ENSGMOP00000002885   4.84e-21   10-94   Ubiquitin-related  
ENSGMOP00000002924   4.44e-18   6-84   Ras-binding domain, RBD  
ENSGMOP00000002960   2.93e-16   570-664   First domain of FERM  
ENSGMOP00000003184   1.03e-46   106-296   Ras-binding domain, RBD  
ENSGMOP00000003245   1.96e-22   1-66   First domain of FERM  
ENSGMOP00000003423   0.000000321   30-96   Ubiquitin-related  
ENSGMOP00000003439   1.76e-24   2-103   Ubiquitin-related  
ENSGMOP00000003601   1.45e-26   759-840   DIX domain  
ENSGMOP00000003742   0.000000245   180-246   UBX domain  
ENSGMOP00000003758   3.45e-21   12-95   Ubiquitin-related  
ENSGMOP00000003776   0.00000000053   1-55   Ubiquitin-related  
ENSGMOP00000003919   1.34e-22   1-79   Ubiquitin-related  
ENSGMOP00000004071   3.91e-46   1-116   GABARAP-like  
ENSGMOP00000004173   3.77e-30   2-86   Ubiquitin-related  
ENSGMOP00000004265   3.54e-19   305-393   First domain of FERM  
ENSGMOP00000004325   9.69e-30   1-76   Ubiquitin-related  
ENSGMOP00000004366   4.55e-22   2-84   First domain of FERM  
ENSGMOP00000004493   6.22e-17   158-246   Ubiquitin-related  
ENSGMOP00000004537   1.14e-26   41-139   First domain of FERM  
ENSGMOP00000004606   2.76e-24   60-155   Ubiquitin-related  
ENSGMOP00000004729   2.58e-24   29-118   APG12-like  
ENSGMOP00000004927   0.00000000000000207   11-106   First domain of FERM  
ENSGMOP00000004991   7.53e-20   58-144   Ubiquitin-related  
ENSGMOP00000005039   1.49e-31   1-93   Ubiquitin-related  
ENSGMOP00000005132   9.09e-27   616-697   DIX domain  
ENSGMOP00000005273   8.27e-23   2-81   First domain of FERM  
ENSGMOP00000005451   0.00000362   1140-1213   Ras-binding domain, RBD  
ENSGMOP00000005782   0.000000000000145   2-59   First domain of FERM  
ENSGMOP00000005949   8.06e-21   133-225   Ubiquitin-related  
ENSGMOP00000005974   7.6e-26   1-105   Ubiquitin-related  
ENSGMOP00000006005   3.38e-22   3-79   Ubiquitin-related  
ENSGMOP00000006051   2.48e-25   2-83   First domain of FERM  
ENSGMOP00000006147   1.24e-21   289-366   DIX domain  
ENSGMOP00000006258   0.00000000967   11-84   Ubiquitin-related  
  0.00000184   90-157   Ubiquitin-related  
ENSGMOP00000006264   1.98e-25   1-69   Ubiquitin-related  
ENSGMOP00000006441   0.00000000815   48-98   Ras-binding domain, RBD  
ENSGMOP00000006543   1.96e-24   165-241   Ras-binding domain, RBD  
ENSGMOP00000006671   0.0000000388   128-229   UBX domain  
ENSGMOP00000006714   3.44e-19   309-398   Ras-binding domain, RBD  
  5.86e-16   256-323   Ras-binding domain, RBD  
ENSGMOP00000006746   0.00000000227   2-35   Ras-binding domain, RBD  
ENSGMOP00000006785   3.31e-19   196-269   First domain of FERM  
ENSGMOP00000006929   3.82e-16   105-193   Ras-binding domain, RBD  
ENSGMOP00000007083   1.1e-24   7-104   Ubiquitin-related  
ENSGMOP00000007129   4.75e-31   243-342   Ras-binding domain, RBD  
ENSGMOP00000007180   0.000000000491   122-202   UBX domain  
ENSGMOP00000007189   1.34e-24   424-524   Ras-binding domain, RBD  
ENSGMOP00000007345   0.0000168   81-138   Ubiquitin-related  
ENSGMOP00000007374   0.0000723   79-108   First domain of FERM  
ENSGMOP00000007496   2.35e-22   348-444   UBX domain  
ENSGMOP00000007667   0.0000000379   187-259   Ras-binding domain, RBD  
ENSGMOP00000007706   5.99e-23   81-146   First domain of FERM  
ENSGMOP00000007761   4.75e-28   517-603   Ras-binding domain, RBD  
ENSGMOP00000007958   3.72e-20   58-144   First domain of FERM  
ENSGMOP00000008047   5.79e-19   508-606   Ras-binding domain, RBD  
ENSGMOP00000008109   1.37e-35   2-78   Ubiquitin-related  
ENSGMOP00000008144   6.53e-26   1-72   Ubiquitin-related  
ENSGMOP00000008313   3.99e-26   83-189   Ras-binding domain, RBD  
ENSGMOP00000008364   2.04e-42   10-125   GABARAP-like  
ENSGMOP00000008407   1.58e-27   32-129   Ras-binding domain, RBD  
ENSGMOP00000008416   1.96e-24   2-79   DIX domain  
ENSGMOP00000008451   1.48e-44   14-129   GABARAP-like  
ENSGMOP00000008627   6.87e-19   8-88   Ubiquitin-related  
ENSGMOP00000009057   0.000000000000909   15-111   Ras-binding domain, RBD  
ENSGMOP00000009146   3.93e-46   106-297   Ras-binding domain, RBD  
ENSGMOP00000009298   7.83e-22   3-80   Ubiquitin-related  
ENSGMOP00000009302   0.000000131   8-64   Ubiquitin-related  
ENSGMOP00000009338   2.48e-22   301-387   Ubiquitin-related  
  0.0000000000000167   1-75   Ubiquitin-related  
  0.0000000000146   231-306   Ubiquitin-related  
ENSGMOP00000009599   1.16e-16   25-107   First domain of FERM  
ENSGMOP00000009764   1.28e-17   23-106   First domain of FERM  
ENSGMOP00000009916   8.68e-24   2-82   First domain of FERM  
ENSGMOP00000009939   2.07e-24   32-113   First domain of FERM  
ENSGMOP00000009961   1.83e-48   132-303   Ras-binding domain, RBD  
ENSGMOP00000010179   5.86e-27   1-83   Ras-binding domain, RBD  
ENSGMOP00000010216   3.93e-37   1672-1780   Ras-binding domain, RBD  
  1.14e-17   1567-1668   Ras-binding domain, RBD  
ENSGMOP00000010288   0.0000000137   172-247   Ras-binding domain, RBD  
ENSGMOP00000010597   1.01e-19   173-256   Ubiquitin-related  
ENSGMOP00000010611   9.92e-17   49-129   First domain of FERM  
ENSGMOP00000010807   1.1e-27   24-104   First domain of FERM  
ENSGMOP00000010826   0.0000000000322   247-320   Ubiquitin-related  
ENSGMOP00000010895   7.23e-24   11-95   First domain of FERM  
ENSGMOP00000010924   6.72e-21   3-89   First domain of FERM  
ENSGMOP00000011164   0.00000000599   3-93   First domain of FERM  
ENSGMOP00000011181   6.2e-23   456-535   UBX domain  
ENSGMOP00000011250   7.75e-32   400-549   Ras-binding domain, RBD  
ENSGMOP00000011273   4.91e-19   122-231   UBX domain  
ENSGMOP00000011381   2.76e-17   1-87   Ubiquitin-related  
ENSGMOP00000011408   4.91e-47   109-300   Ras-binding domain, RBD  
ENSGMOP00000011630   1.7e-23   4-85   Ras-binding domain, RBD  
ENSGMOP00000011673   8.78e-37   3-116   GABARAP-like  
ENSGMOP00000011752   2e-21   1-95   Ubiquitin-related  
ENSGMOP00000011802   1.93e-30   3-92   Ubiquitin-related  
ENSGMOP00000011808   0.000000313   984-1039   Ubiquitin-related  
ENSGMOP00000011867   3.77e-19   3-82   Ubiquitin-related  
ENSGMOP00000011888   0.000000000985   348-429   Ubiquitin-related  
ENSGMOP00000011964   0.00000496   704-742   DIX domain  
ENSGMOP00000011965   4.03e-33   33-133   First domain of FERM  
ENSGMOP00000012080   4.39e-19   1207-1310   First domain of FERM  
  3.51e-16   1838-1946   Ras-binding domain, RBD  
ENSGMOP00000012147   0.0000000148   125-202   Ras-binding domain, RBD  
ENSGMOP00000012269   2.1e-22   2-92   Ubiquitin-related  
ENSGMOP00000012404   0.0000117   291-357   Ubiquitin-related  
ENSGMOP00000012442   2.17e-38   10-126   GABARAP-like  
ENSGMOP00000012494   5.17e-43   11-125   GABARAP-like  
ENSGMOP00000012507   0.0000000000000365   413-478   Ubiquitin-related  
ENSGMOP00000012615   2.27e-23   2-91   Ras-binding domain, RBD  
ENSGMOP00000012677   8.16e-29   1083-1181   Ras-binding domain, RBD  
  0.000000000382   1029-1097   Ras-binding domain, RBD  
ENSGMOP00000012718   1.59e-18   13-108   Ubiquitin-related  
ENSGMOP00000012733   5.39e-36   14-93   Ubiquitin-related  
ENSGMOP00000013052   3.88e-26   167-306   UBX domain  
ENSGMOP00000013258   3.72e-25   93-173   First domain of FERM  
ENSGMOP00000013400   0.0000827   2-77   Ras-binding domain, RBD  
ENSGMOP00000013406   2.69e-24   4-85   Ras-binding domain, RBD  
ENSGMOP00000013491   6.82e-24   41-123   First domain of FERM  
ENSGMOP00000013495   2.07e-20   28-111   First domain of FERM  
ENSGMOP00000013528   1.45e-23   24-94   Ras-binding domain, RBD  
ENSGMOP00000013634   6.36e-17   3-98   Ubiquitin-related  
ENSGMOP00000014029   6.41e-17   2-62   First domain of FERM  
ENSGMOP00000014039   0.0000000000313   1152-1255   First domain of FERM  
  0.000000000142   1739-1840   Ubiquitin-related  
ENSGMOP00000014250   1.62e-25   12-114   Ras-binding domain, RBD  
ENSGMOP00000014294   0.000000000000537   3-84   First domain of FERM  
ENSGMOP00000014397   0.0000181   10-86   Ras-binding domain, RBD  
ENSGMOP00000014558   1.24e-27   1-106   Ubiquitin-related  
ENSGMOP00000014627   8.06e-17   1-79   Ubiquitin-related  
ENSGMOP00000014631   0.00000165   199-262   Ras-binding domain, RBD  
ENSGMOP00000014712   6.2e-25   158-230   Ras-binding domain, RBD  
ENSGMOP00000014732   1.27e-25   181-270   Ras-binding domain, RBD  
ENSGMOP00000014743   1.36e-17   5-95   Ubiquitin-related  
ENSGMOP00000014980   2.38e-35   111-277   Ras-binding domain, RBD  
ENSGMOP00000015056   0.0000000119   32-116   Ubiquitin-related  
ENSGMOP00000015108   1.14e-23   9-85   DIX domain  
ENSGMOP00000015202   0.00000000000723   176-257   Ubiquitin-related  
ENSGMOP00000015396   0.00000000000637   1222-1278   First domain of FERM  
  0.000000000372   1825-1884   First domain of FERM  
ENSGMOP00000015521   6.37e-17   15-110   First domain of FERM  
ENSGMOP00000015528   3.88e-21   1-82   Ras-binding domain, RBD  
ENSGMOP00000015861   0.000000672   254-328   Ras-binding domain, RBD  
ENSGMOP00000016154   4.43e-27   20-124   Ras-binding domain, RBD  
ENSGMOP00000016503   1.81e-17   274-379   UBX domain  
ENSGMOP00000016689   0.0000534   391-481   First domain of FERM  
ENSGMOP00000017079   1.21e-41   4-120   GABARAP-like  
ENSGMOP00000017175   0.000000000000138   16-64   Ras-binding domain, RBD  
ENSGMOP00000017187   1.27e-27   663-773   Ubiquitin-related  
ENSGMOP00000017257   0.000000000107   119-200   Ras-binding domain, RBD  
ENSGMOP00000017352   2.18e-30   254-370   UBX domain  
ENSGMOP00000017487   4.71e-18   8-95   Ubiquitin-related  
ENSGMOP00000017574   0.00000000691   211-300   Ubiquitin-related  
ENSGMOP00000017614   8.68e-22   2-65   First domain of FERM  
ENSGMOP00000017822   0.000000000000553   360-428   Ubiquitin-related  
ENSGMOP00000017831   1.72e-27   1003-1096   Ras-binding domain, RBD  
  0.00000000982   949-1017   UBX domain  
ENSGMOP00000017854   0.00000000000269   1-63   First domain of FERM  
ENSGMOP00000017949   0.000000000000217   10-90   Ubiquitin-related  
ENSGMOP00000018139   0.000000129   181-247   Ras-binding domain, RBD  
ENSGMOP00000018254   1.58e-17   54-106   Ras-binding domain, RBD  
ENSGMOP00000018326   1.08e-16   3-87   Ubiquitin-related  
ENSGMOP00000018406   0.0000121   81-135   Ubiquitin-related  
ENSGMOP00000018679   0.000000196   124-198   Ras-binding domain, RBD  
ENSGMOP00000018749   3.62e-24   2-83   Ras-binding domain, RBD  
ENSGMOP00000018750   5.79e-23   3-72   First domain of FERM  
ENSGMOP00000019152   1.39e-31   123-232   Ras-binding domain, RBD  
ENSGMOP00000019162   1.11e-21   4-95   Ubiquitin-related  
ENSGMOP00000019356   2.48e-24   2-83   First domain of FERM  
ENSGMOP00000019372   4.6e-24   1-90   Ubiquitin-related  
ENSGMOP00000019793   1.33e-34   589-682   Ras-binding domain, RBD  
ENSGMOP00000019841   0.00000000117   1-69   Ubiquitin-related  
ENSGMOP00000019871   1.24e-21   3-89   First domain of FERM  
ENSGMOP00000019896   6.72e-35   10-126   GABARAP-like  
ENSGMOP00000020022   0.000000000000027   16-103   Ubiquitin-related  
ENSGMOP00000020207   3.36e-32   653-754   Ras-binding domain, RBD  
ENSGMOP00000020507   0.0000000000324   3-51   Ras-binding domain, RBD  
ENSGMOP00000020541   0.0000362   280-347   First domain of FERM  
ENSGMOP00000020626   2e-17   1190-1293   Ras-binding domain, RBD  
  0.00000000000000575   1785-1893   First domain of FERM  
ENSGMOP00000020730   6.35e-38   624-720   Ras-binding domain, RBD  
ENSGMOP00000020731   6.75e-30   3-92   Ubiquitin-related  
ENSGMOP00000020911   0.0000127   266-333   First domain of FERM  
ENSGMOP00000021060   0.000000000000646   10-108   Ras-binding domain, RBD  
ENSGMOP00000021174   8.47e-24   2-82   DIX domain  
 
Weak hits:
ENSGMOP00000000409   0.000951   94-125   First domain of FERM  
ENSGMOP00000002519   0.000296   702-764   Ras-binding domain, RBD  
ENSGMOP00000002915   0.000711   645-703   Ubiquitin-related  
ENSGMOP00000003046   0.00101   1-49   Ubiquitin-related  
ENSGMOP00000004886   0.00756   260-314   Ubiquitin-related  
ENSGMOP00000004914   0.00171   2-69   UBX domain  
ENSGMOP00000006310   0.000419   87-125   Ubiquitin-related  
  0.0789   6-65   Ubiquitin-related  
ENSGMOP00000006801   0.0322   22-81   Ubiquitin-related  
ENSGMOP00000007403   0.0878   1109-1188   Ubiquitin-related  
ENSGMOP00000008370   0.000537   161-231   Ubiquitin-related  
ENSGMOP00000008764   0.032   57-110   Ubiquitin-related  
ENSGMOP00000009039   0.0449   23-96   Ubiquitin-related  
ENSGMOP00000009540   0.00543   1427-1522   Ubiquitin-related  
ENSGMOP00000011422   0.0114   1957-2038   UBX domain  
ENSGMOP00000011846   0.00021   192-227   Ubiquitin-related  
ENSGMOP00000011850   0.0468   28-86   Ubiquitin-related  
ENSGMOP00000011851   0.0142   512-583   UBX domain  
  0.0531   863-921   Ubiquitin-related  
ENSGMOP00000012280   0.000377   714-777   Ubiquitin-related  
ENSGMOP00000013572   0.00109   156-208   Ubiquitin-related  
ENSGMOP00000014037   0.00173   110-205   Ubiquitin-related  
ENSGMOP00000014133   0.00107   788-858   Ras-binding domain, RBD  
ENSGMOP00000014174   0.00479   89-141   First domain of FERM  
ENSGMOP00000015309   0.000175   123-202   Ubiquitin-related  
ENSGMOP00000015319   0.0992   137-203   Ubiquitin-related  
ENSGMOP00000015615   0.00207   49-130   Ras-binding domain, RBD  
ENSGMOP00000015674   0.0069   77-123   Ubiquitin-related  
  0.0719   5-75   Ubiquitin-related  
ENSGMOP00000015714   0.0313   81-125   Ubiquitin-related  
ENSGMOP00000015775   0.00434   1-28   Ras-binding domain, RBD  
ENSGMOP00000015833   0.0285   323-359   Ubiquitin-related  
ENSGMOP00000016132   0.000227   60-91   First domain of FERM  
ENSGMOP00000017240   0.00112   190-233   Ubiquitin-related  
ENSGMOP00000018181   0.0248   308-398   Ras-binding domain, RBD  
ENSGMOP00000018256   0.000765   311-382   Ubiquitin-related  
ENSGMOP00000018619   0.000269   1143-1239   Ras-binding domain, RBD  
ENSGMOP00000020592   0.000272   11-72   Ubiquitin-related  
ENSGMOP00000020740   0.000448   120-210   Ras-binding domain, RBD  

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Select to display   Genome       Domains   Proteins
No Yes ALL   423065 423065
No Yes Homo sapiens 76_38 Human 941 853
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 201 181
No Yes Gorilla gorilla 76_3.1 Western gorilla 277 258
No Yes Pongo abelii 76_2 Sumatran orangutan 207 186
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 216 197
No Yes Papio anubis 76 Olive baboon 232 212
No Yes Macaca mulatta 76_1 Rhesus monkey 351 315
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 431 403
No Yes Otolemur garnettii 76_3 Small-eared galago 209 192
No Yes Microcebus murinus 76_1 Gray mouse lemur 136 126
No Yes Rattus norvegicus 76_5.0 Norway rat 253 228
No Yes Mus musculus 76_38 House mouse 521 464
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 148 136
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 187 175
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 197 185
No Yes Cavia porcellus 76_3 Domestic guinea pig 192 181
No Yes Oryctolagus cuniculus 76_2 Rabbit 206 194
No Yes Ochotona princeps 76 American pika 138 126
No Yes Tupaia belangeri 76 Northern tree shrew 123 117
No Yes Sus scrofa 76_10.2 Pig 226 206
No Yes Bos taurus 76_3.1 Cattle 226 205
No Yes Ovis aries 76_3.1 Sheep 219 198
No Yes Vicugna pacos 76_1 Alpaca 99 94
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 177 160
No Yes Mustela putorius furo 76_1.0 Domestic ferret 193 178
No Yes Ailuropoda melanoleuca 76_1 Giant panda 212 199
No Yes Canis familiaris 76_3.1 Dog 254 232
No Yes Felis catus 76_6.2 Domestic cat 201 189
No Yes Equus caballus 76_2 Horse 246 224
No Yes Myotis lucifugus 76_2.0 Little brown bat 208 194
No Yes Pteropus vampyrus 76_1 Large flying fox 177 162
No Yes Sorex araneus 76_1 European shrew 116 113
No Yes Erinaceus europaeus 76 Western European hedgehog 113 110
No Yes Procavia capensis 76_1 Cape rock hyrax 140 125
No Yes Loxodonta africana 76_3 African savanna elephant 255 237
No Yes Echinops telfairi 76 Small Madagascar hedgehog 139 134
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 332 315
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 110 104
No Yes Macropus eugenii 76_1.0 Tammar wallaby 155 142
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 224 203
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 211 190
No Yes Ornithorhynchus anatinus 76_5 Platypus 162 147
No Yes Saccoglossus kowalevskii v3.0   377 346
No Yes Petromyzon marinus 76_7.0 Sea lamprey 102 91
No Yes Meleagris gallopavo 76_2 Turkey 149 140
No Yes Gallus gallus 76_4 Chicken 161 148
No Yes Anas platyrhynchos 76_1.0 Mallard 157 143
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 163 147
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 161 145
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 184 168
No Yes Anolis carolinensis 76_2.0 Green anole 184 164
No Yes Xenopus laevis African clawed frog 405 358
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 219 200
No Yes Latimeria chalumnae 76_1 Coelacanth 222 209
No Yes Lepisosteus oculatus 76 Spotted gar 233 217
No Yes Gadus morhua 76_1 Atlantic cod 220 206
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 290 272
No Yes Takifugu rubripes 76_4 Torafugu 669 623
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 298 269
No Yes Oryzias latipes 76_1 Japanese medaka 263 241
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 236 222
No Yes Poecilia formosa 76 Amazon molly 244 228
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 310 293
No Yes Astyanax mexicanus 76 Mexican tetra 229 214
No Yes Danio rerio 76_9 Zebrafish 428 390
No Yes Oikopleura dioica   85 78
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 200 139
No Yes Ciona intestinalis 76 Vase tunicate 108 95
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 147 137
No Yes Adineta vaga   307 272
No Yes Octopus bimaculoides 280   142 126
No Yes Crassostrea gigas 22 Pacific oyster 115 102
No Yes Lottia gigantea Owl limpet 137 112
No Yes Helobdella robusta   113 98
No Yes Capitella sp. I   154 132
No Yes Danaus plexippus OGS1.0 Monarch butterfly 102 85
No Yes Heliconius melpomene Postman butterfly 103 78
No Yes Bombyx mori Domestic silkworm 90 77
No Yes Nasonia vitripennis Jewel wasp 94 71
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 214 147
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 105 84
No Yes Linepithema humile v1.1 Argentine ant 89 79
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 91 82
No Yes Solenopsis invicta v.2.2.3 Red fire ant 70 64
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 101 80
No Yes Atta cephalotes v1.1   85 77
No Yes Camponotus floridanus v3.3 Florida carpenter ant 101 84
No Yes Lucilia cuprina Australian sheep blowfly 77 67
No Yes Drosophila grimshawi 1.3   103 82
No Yes Drosophila willistoni 1.3   111 87
No Yes Drosophila pseudoobscura 2.13   101 83
No Yes Drosophila persimilis 1.3   99 82
No Yes Drosophila suzukii   94 85
No Yes Drosophila yakuba 1.3   102 88
No Yes Drosophila simulans 1.3   88 76
No Yes Drosophila sechellia 1.3   109 86
No Yes Drosophila melanogaster 76_5 Fruit fly 286 213
No Yes Drosophila erecta 1.3   117 86
No Yes Drosophila ananassae 1.3   120 92
No Yes Drosophila virilis 1.2   99 83
No Yes Drosophila mojavensis 1.3   120 85
No Yes Megaselia scalaris 22   28 25
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 131 98
No Yes Culex pipiens quinquefasciatus Southern house mosquito 115 78
No Yes Anopheles darlingi 22 American malaria mosquito 77 64
No Yes Anopheles gambiae 49_3j African malaria mosquito 95 78
No Yes Tribolium castaneum 3.0 Red flour beetle 108 88
No Yes Pediculus humanus corporis (Early assembly) Human body louse 103 83
No Yes Acyrthosiphon pisum Pea aphid 112 91
No Yes Rhodnius prolixus 22   94 82
No Yes Daphnia pulex Common water flea 112 95
No Yes Strigamia maritima 22   113 98
No Yes Sarcoptes scabiei   68 62
No Yes Tetranychus urticae Two-spotted spider mite 89 79
No Yes Ixodes scapularis (Preliminary) Black-legged tick 86 73
No Yes Pristionchus pacificus   82 64
No Yes Meloidogyne incognita Southern root-knot nematode 100 92
No Yes Meloidogyne hapla   51 50
No Yes Onchocerca volvulus 22   92 79
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 122 102
No Yes Caenorhabditis japonica   77 72
No Yes Caenorhabditis brenneri   129 111
No Yes Caenorhabditis remanei   113 93
No Yes Caenorhabditis elegans 76_235 Roundworm 209 163
No Yes Caenorhabditis briggsae 2   96 81
No Yes Trichinella spiralis 22   94 72
No Yes Hymenolepis microstoma   89 71
No Yes Echinococcus multilocularis   97 80
No Yes Echinococcus granulosus   100 81
No Yes Taenia solium Pork tapeworm 100 81
No Yes Schistosoma mansoni   92 83
No Yes Mnemiopsis leidyi Sea walnut 83 71
No Yes Thelohanellus kitauei   30 23
No Yes Acropora digitifera v1.0   131 114
No Yes Nematostella vectensis 1.0 Starlet sea anemone 132 113
No Yes Hydra vulgaris   107 85
No Yes Amphimedon queenslandica   235 177
No Yes Trichoplax adhaerens   91 76
No Yes Proterospongia sp. ATCC 50818   75 68
No Yes Monosiga brevicollis   55 52
No Yes Sphaeroforma arctica JP610   52 47
No Yes Capsaspora owczarzaki ATCC 30864   81 69
No Yes Conidiobolus coronatus NRRL28638 v1.0   52 44
No Yes Mortierella verticillata NRRL 6337   66 57
No Yes Phycomyces blakesleeanus   58 49
No Yes Rhizopus oryzae RA 99-880   62 55
No Yes Mucor circinelloides   58 50
No Yes Rhizomucor miehei CAU432   46 44
No Yes Malassezia globosa CBS 7966   42 40
No Yes Sporisorium reilianum 22   28 28
No Yes Ustilago maydis   32 27
No Yes Mixia osmundae IAM 14324 v1.0   29 29
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   35 29
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   38 31
No Yes Melampsora laricis-populina   40 33
No Yes Rhodotorula graminis WP1 v1.0   36 33
No Yes Sporobolomyces roseus IAM 13481   33 27
No Yes Microbotryum violaceum 22   30 30
No Yes Wallemia sebi v1.0   33 24
No Yes Sphaerobolus stellatus v1.0   58 47
No Yes Piloderma croceum F 1598 v1.0   77 58
No Yes Serpula lacrymans var. lacrymans S7.9   36 29
No Yes Coniophora puteana   36 33
No Yes Hydnomerulius pinastri v2.0   38 34
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   48 40
No Yes Pisolithus microcarpus 441 v1.0   55 43
No Yes Pisolithus tinctorius Marx 270 v1.0   41 35
No Yes Scleroderma citrinum Foug A v1.0   47 38
No Yes Coprinopsis cinerea okayama7 130 v3   43 37
No Yes Pleurotus ostreatus Oyster mushroom 51 36
No Yes Amanita thiersii Skay4041 v1.0   36 29
No Yes Amanita muscaria Koide v1.0 Fly agaric 46 38
No Yes Galerina marginata v1.0   55 44
No Yes Hebeloma cylindrosporum h7 v2.0   54 46
No Yes Laccaria bicolor S238N-H82   53 44
No Yes Agaricus bisporus var. bisporus   33 30
No Yes Schizophyllum commune   38 32
No Yes Stereum hirsutum FP-91666 SS1 v1.0   45 36
No Yes Heterobasidion annosum   41 33
No Yes Gloeophyllum trabeumv1.0   42 32
No Yes Punctularia strigosozonata v1.0   31 28
No Yes Sebacina vermifera MAFF 305830 v1.0   47 40
No Yes Fomitiporia mediterranea v1.0   38 35
No Yes Tulasnella calospora AL13/4D v1.0   59 52
No Yes Postia placenta   56 41
No Yes Wolfiporia cocos MD-104 SS10 v1.0   44 35
No Yes Fomitopsis pinicolav1.0   45 36
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   45 36
No Yes Phanerochaete chrysosporium RP-78 2.1   39 30
No Yes Dichomitus squalens   41 34
No Yes Trametes versicolor v1.0   55 35
No Yes Tremella mesenterica Witches' butter 28 23
No Yes Daldinia eschscholzii EC12 v1.0   32 28
No Yes Apiospora montagnei NRRL 25634 v1.0   32 28
No Yes Magnaporthe poae ATCC 64411 22   31 26
No Yes Magnaporthe grisea 70-15   31 27
No Yes Podospora anserina   30 26
No Yes Sporotrichum thermophile ATCC 42464   28 24
No Yes Thielavia terrestris NRRL 8126   29 25
No Yes Chaetomium globosum CBS 148.51   27 23
No Yes Neurospora tetrasperma   31 27
No Yes Neurospora discreta FGSC 8579   32 28
No Yes Neurospora crassa OR74A   33 29
No Yes Cryphonectria parasitica Chestnut blight fungus 32 29
No Yes Verticillium albo-atrum VaMs.102   29 27
No Yes Verticillium dahliae VdLs.17   31 28
No Yes Acremonium alcalophilumv 1.0   35 31
No Yes Glomerella graminicola 22   34 30
No Yes Fusarium graminearum   34 31
No Yes Nectria haematococca mpVI   35 32
No Yes Fusarium oxysporum f. sp. lycopersici 4286   35 31
No Yes Fusarium verticillioides 7600   32 28
No Yes Trichoderma asperellum CBS 433.97 v1.0   32 29
No Yes Trichoderma atroviride   33 30
No Yes Trichoderma citrinoviride v1.0   31 28
No Yes Trichoderma reesei 1.2   32 28
No Yes Trichoderma virens Gv29-8   34 30
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   33 29
No Yes Trichoderma harzianum CBS 226.95 v1.0   35 31
No Yes Amorphotheca resinae v1.0 Creosote fungus 35 31
No Yes Botrytis cinerea B05.10   34 31
No Yes Sclerotinia sclerotiorum   34 31
No Yes Blumeria graminis 22   30 29
No Yes Didymella exigua CBS 183.55 v1.0   32 28
No Yes Leptosphaeria maculans 22   30 25
No Yes Setosphaeria turcica v1.0   31 27
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   31 29
No Yes Cochliobolus victoriae FI3 v1.0   34 30
No Yes Cochliobolus carbonum 26-R-13 v1.0   29 28
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 30 26
No Yes Alternaria brassicicola   31 27
No Yes Cochliobolus lunatus m118 v2.0   35 31
No Yes Pyrenophora teres f. teres 22   32 29
No Yes Pyrenophora tritici-repentis   31 28
No Yes Stagonospora nodorum   32 29
No Yes Mycosphaerella graminicola IPO323   33 31
No Yes Zasmidium cellare ATCC 36951 v1.0   40 36
No Yes Dothistroma septosporum   45 40
No Yes Septoria musiva v1.0   34 30
No Yes Mycosphaerella fijiensis CIRAD86   39 33
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   29 26
No Yes Paracoccidioides brasiliensis Pb18   33 29
No Yes Coccidioides posadasii RMSCC 3488   32 29
No Yes Coccidioides immitis RS   33 29
No Yes Ajellomyces dermatitidis SLH14081   33 28
No Yes Histoplasma capsulatum class NAmI strain WU24   26 22
No Yes Microsporum canis CBS 113480   30 26
No Yes Trichophyton equinum CBS 127.97   31 28
No Yes Trichophyton verrucosum HKI 0517   27 24
No Yes Arthroderma benhamiae CBS 112371   28 25
No Yes Trichophyton tonsurans CBS 112818   31 28
No Yes Trichophyton rubrum CBS 118892   32 29
No Yes Uncinocarpus reesii 1704   25 21
No Yes Aspergillus zonatus v1.0   31 30
No Yes Penicillium chrysogenum Wisconsin 54-1255   31 27
No Yes Penicillium chrysogenum v1.0   32 28
No Yes Aspergillus acidus v1.0   33 29
No Yes Aspergillus fumigatus Af293   31 27
No Yes Aspergillus brasiliensis v1.0   33 29
No Yes Aspergillus nidulans FGSC A4   33 29
No Yes Aspergillus sydowii v1.0   33 29
No Yes Aspergillus versicolor v1.0   31 27
No Yes Aspergillus glaucus   33 29
No Yes Aspergillus carbonarius ITEM 5010   33 29
No Yes Neosartorya fischeri NRRL 181   35 31
No Yes Aspergillus terreus NIH2624   33 28
No Yes Aspergillus tubingensis v1.0   33 29
No Yes Aspergillus wentii v1.0   35 31
No Yes Aspergillus oryzae RIB40   27 24
No Yes Aspergillus niger 22   31 27
No Yes Aspergillus niger ATCC 1015   18 17
No Yes Aspergillus flavus NRRL3357   32 28
No Yes Aspergillus clavatus NRRL 1   34 30
No Yes Penicillium marneffei ATCC 18224   40 36
No Yes Tuber melanosporum Mel28 22   38 30
No Yes Tuber melanosporum Vittad Perigord truffle 39 31
No Yes Hansenula polymorpha v2.0   25 20
No Yes Dekkera bruxellensis CBS 2499 v2.0   20 20
No Yes Pichia membranifaciensv1.0   18 18
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   25 23
No Yes Candida dubliniensis CD36   24 21
No Yes Candida tropicalis MYA-3404   22 19
No Yes Candida parapsilosis   21 19
No Yes Candida albicans SC5314   24 22
No Yes Lodderomyces elongisporus NRRL YB-4239   21 18
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   20 19
No Yes Pichia stipitis CBS 6054   22 19
No Yes Candida guilliermondii ATCC 6260   27 22
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   22 22
No Yes Debaromyces hansenii   27 22
No Yes Wickerhamomyces anomalus   33 23
No Yes Pichia pastoris GS115   24 21
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   11 11
No Yes Yarrowia lipolytica CLIB122   30 25
No Yes Candida lusitaniae ATCC 42720   25 21
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   20 20
No Yes Vanderwaltozyma polyspora DSM 70294   33 26
No Yes Candida glabrata CBS138   33 26
No Yes Kluyveromyces thermotolerans CBS 6340   25 21
No Yes Lachancea kluyveri   28 24
No Yes Kluyveromyces waltii   20 17
No Yes Ashbya gossypii ATCC 10895   25 20
No Yes Zygosaccharomyces rouxii   29 23
No Yes Saccharomyces mikatae MIT   28 24
No Yes Saccharomyces paradoxus MIT   29 24
No Yes Saccharomyces cerevisiae 76 Baker's yeast 31 26
No Yes Saccharomyces bayanus MIT   30 24
No Yes Kluyveromyces lactis   25 21
No Yes Schizosaccharomyces cryophilus OY26 22   32 30
No Yes Schizosaccharomyces octosporus yFS286   32 29
No Yes Schizosaccharomyces japonicus yFS275   34 28
No Yes Schizosaccharomyces pombe Fission yeast 35 29
No Yes Catenaria anguillulae PL171 v1.0   60 55
No Yes Allomyces macrogynus ATCC 38327   105 94
No Yes Spizellomyces punctatus DAOM BR117   54 45
No Yes Dictyostelium discoideum   137 103
No Yes Dictyostelium purpureum   98 79
No Yes Entamoeba dispar 1.2   38 37
No Yes Entamoeba invadens 1.2   44 42
No Yes Entamoeba histolytica 1   43 42
No Yes Selaginella moellendorffii   135 88
No Yes Pinus taeda Loblolly pine 93 86
No Yes Picea abies Norway spruce 202 107
No Yes Eucalyptus grandis v201 Rose gum 186 161
No Yes Theobroma cacao B97-61/B2 v1 Cacao 135 103
No Yes Gossypium raimondii v221   576 425
No Yes Citrus clementina v165   242 172
No Yes Citrus sinensis v154 Sweet orange 263 186
No Yes Thellungiella halophila v173   199 154
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 169 154
No Yes Capsella rubella v183   200 141
No Yes Arabidopsis lyrata Lyrate rockcress 209 141
No Yes Arabidopsis thaliana 10 Thale cress 270 186
No Yes Carica papaya Papaya 98 75
No Yes Medicago truncatula Barrel medic 343 228
No Yes Phaseolus vulgaris v186 French bean 149 119
No Yes Glycine max v109 Soybean 363 272
No Yes Cucumis sativus v122 Cucumber 173 161
No Yes Fragaria vesca Wild strawberry 182 127
No Yes Malus domestica v196 Apple 347 271
No Yes Prunus persica v139 Peach 192 131
No Yes Linum usitatissimum v200 Flax 162 150
No Yes Manihot esculenta v147 Cassava 195 153
No Yes Populus trichocarpa v156 Black cottonwood 305 212
No Yes Vitis vinifera Wine grape 108 85
No Yes Mimulus guttatus v140 Spotted monkey flower 210 126
No Yes Solanum lycopersicum v.2.3 Tomato 151 119
No Yes Solanum tuberosum Potato 218 162
No Yes Actinidia chinensis Hongyang   175 132
No Yes Aquilegia coerulea v195   408 218
No Yes Triticum urartu 22   140 98
No Yes Triticum aestivum 22 Bread wheat 318 259
No Yes Aegilops tauschii 22   93 85
No Yes Brachypodium distachyon Stiff brome 163 121
No Yes Oryza barthii 22 African wild rice 142 123
No Yes Oryza meridionalis 22   141 123
No Yes Oryza glumaepatula 22   145 125
No Yes Oryza glaberrima African rice 122 98
No Yes Oryza punctata 22   142 111
No Yes Oryza nivara 22   158 138
No Yes Oryza brachyantha 22 Malo sina 130 104
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 270 185
No Yes Oryza sativa v193 Rice 269 183
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 140 104
No Yes Panicum virgatum v202 Switchgrass 384 266
No Yes Setaria italica v164 Foxtail millet 256 159
No Yes Zea mays subsp. mays Maize 252 181
No Yes Zea mays v181 Maize 287 215
No Yes Sorghum bicolor Sorghum 162 104
No Yes Musa balbisiana Balbis banana 145 120
No Yes Musa acuminata 22 Wild Malaysian banana 144 130
No Yes Amborella trichopoda 22   62 61
No Yes Physcomitrella patens   136 95
No Yes Coccomyxa subellipsoidea sp. C-169 v2   55 45
No Yes Asterochloris sp. Cgr/DA1pho v1.0   33 28
No Yes Chlorella variabilis sp. NC64A   53 41
No Yes Chlorella vulgaris   41 35
No Yes Volvox carteri f. nagariensis   45 38
No Yes Volvox carteri v199   53 42
No Yes Chlamydomonas reinhardtii 4.0   54 51
No Yes Ostreococcus sp. RCC809   26 24
No Yes Ostreococcus lucimarinus CCE9901   34 30
No Yes Ostreococcus tauri   27 24
No Yes Bathycoccus prasinos   37 32
No Yes Micromonas sp. RCC299   38 35
No Yes Micromonas pusilla CCMP1545 v3.0   42 37
No Yes Cyanidioschyzon merolae strain 10D 22   17 16
No Yes Cyanidioschyzon merolae   17 16
No Yes Porphyridium purpureum 02_2012   30 30
No Yes Thecamonas trahens ATCC 50062   64 59
No Yes Bigelowiella natans CCMP2755 22   133 110
No Yes Giardia lamblia 2.3   14 14
No Yes Cyanophora paradoxa   45 43
No Yes Leishmania mexicana 2.4   43 42
No Yes Leishmania major strain Friedlin   70 59
No Yes Leishmania infantum JPCM5 2.4   61 42
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   65 39
No Yes Trypanosoma vivax   34 31
No Yes Trypanosoma cruzi strain CL Brener   45 31
No Yes Trypanosoma congolense 2.4   42 28
No Yes Trypanosoma brucei gambiense v4.1   31 31
No Yes Trypanosoma brucei TREU927 v4.1   40 32
No Yes Ectocarpus siliculosus   68 57
No Yes Aureococcus anophagefferens   59 49
No Yes Albugo laibachii 22   64 54
No Yes Pythium iwayamai DAOM BR242034 22   53 48
No Yes Pythium arrhenomanes ATCC 12531 22   43 40
No Yes Pythium ultimum v1.7-2   57 54
No Yes Pythium aphanidermatum DAOM BR444 22   47 44
No Yes Pythium irregulare DAOM BR486 22   49 45
No Yes Pythium vexans DAOM BR484 22   44 42
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 69 57
No Yes Phytophthora sojae 1.1   65 56
No Yes Phytophthora infestans T30-4   66 59
No Yes Phytophthora capsici   61 52
No Yes Hyaloperonospora arabidopsidis 22   58 49
No Yes Phaeodactylum tricornutumCCAP 1055/1   35 31
No Yes Fragilariopsis cylindrus   96 70
No Yes Thalassiosira pseudonana CCMP1335   39 37
No Yes Perkinsus marinus ATCC 50983   77 64
No Yes Paramecium tetraurelia   203 153
No Yes Tetrahymena thermophila SB210 1   124 70
No Yes Ichthyophthirius multifiliis strain G5   30 27
No Yes Cryptosporidium hominis   24 21
No Yes Cryptosporidium muris   26 24
No Yes Cryptosporidium parvum Iowa II   28 25
No Yes Neospora caninum   42 35
No Yes Toxoplasma gondii VEG   32 28
No Yes Toxoplasma gondii ME49   34 30
No Yes Toxoplasma gondii GT1   33 29
No Yes Babesia bovis T2Bo   48 44
No Yes Theileria parva   27 26
No Yes Theileria annulata   22 21
No Yes Plasmodium falciparum 3D7   31 27
No Yes Plasmodium vivax SaI-1 7.0   29 25
No Yes Plasmodium knowlesi strain H   34 27
No Yes Plasmodium yoelii ssp. yoelii 1   24 21
No Yes Plasmodium chabaudi   31 28
No Yes Plasmodium berghei ANKA   29 27
No Yes Symbiodinium minutum clade B1 v1.2   460 428
No Yes Naegleria gruberi   113 78
No Yes Trichomonas vaginalis   230 207
No Yes Guillardia theta CCMP2712 v1.0   97 83
No Yes Emiliania huxleyi CCMP1516   137 121
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Ruminococcus albus 7   3 3
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Coprococcus sp. ART55/1   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Enterococcus hirae ATCC 9790   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus amyloliquefaciens FZB42   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus coagulans 2-6   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Parachlamydia acanthamoebae UV-7   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Candidatus Caldiarchaeum subterraneum   1 1
No Yes Thermoplasmatales archaeon BRNA1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 377 324
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 225 169
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 130 97
No Yes Ascaris suum Victoria/Ghent Pig roundworm 87 70
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 156 125
No Yes Cryptococcus neoformans var. grubii H99   29 25
No Yes Cryptococcus neoformans B-3501A   36 28
No Yes Cryptococcus neoformans JEC21   33 25
No Yes Paracoccidioides brasiliensis Pb01   32 27
No Yes Paracoccidioides brasiliensis Pb03   31 27
No Yes Coccidioides posadasii str. Silveira   31 28
No Yes Coccidioides immitis RMSCC 3703   27 25
No Yes Coccidioides immitis RMSCC 2394   33 29
No Yes Coccidioides immitis H538.4   31 26
No Yes Ajellomyces dermatitidis ER-3   32 28
No Yes Histoplasma capsulatum H143   30 26
No Yes Histoplasma capsulatum H88   32 28
No Yes Histoplasma capsulatum G186AR   33 29
No Yes Aspergillus fumigatus A1163   33 29
No Yes Candida albicans WO-1   22 20
No Yes Saccharomyces cerevisiae UC5   25 24
No Yes Saccharomyces cerevisiae PW5   28 23
No Yes Saccharomyces cerevisiae FL100   21 17
No Yes Saccharomyces cerevisiae CLIB382   2 2
No Yes Saccharomyces cerevisiae CLIB324   14 13
No Yes Saccharomyces cerevisiae CBS7960   23 22
No Yes Saccharomyces cerevisiae YJM269   26 21
No Yes Saccharomyces cerevisiae T7   31 26
No Yes Saccharomyces cerevisiae FostersB   25 22
No Yes Saccharomyces cerevisiae FostersO   18 18
No Yes Saccharomyces cerevisiae VL3   25 23
No Yes Saccharomyces cerevisiae Vin13   26 22
No Yes Saccharomyces cerevisiae LalvinQA23   22 22
No Yes Saccharomyces cerevisiae AWRI796   22 22
No Yes Saccharomyces cerevisiae Sigma1278b   30 26
No Yes Saccharomyces cerevisiae W303   28 26
No Yes Saccharomyces cerevisiae JAY291   26 25
No Yes Saccharomyces cerevisiae AWRI1631   17 16
No Yes Saccharomyces cerevisiae YPS163   10 10
No Yes Saccharomyces cerevisiae M22   12 12
No Yes Saccharomyces cerevisiae T73   11 11
No Yes Saccharomyces cerevisiae CLIB215   18 17
No Yes Saccharomyces cerevisiae Y10   8 7
No Yes Saccharomyces cerevisiae YJM789   30 25
No Yes Saccharomyces cerevisiae YJM789   31 26
No Yes Saccharomyces cerevisiae RM11-1a   31 26
No Yes Saccharomyces cerevisiae RM11-1a   31 26
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 31 26
No Yes Schizosaccharomyces pombe 972h-   35 29
No Yes Batrachochytrium dendrobatidis JEL423   37 34
No Yes Batrachochytrium dendrobatidis JAM81   37 32
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 141 100
No Yes Hordeum vulgare 22 Domesticated barley 119 112
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 180 136
No Yes Trypanosoma brucei Lister 427 v4.1   40 32
No Yes Neospora caninum Nc-Liverpool 6.2   42 35
No Yes Plasmodium falciparum HB3   24 20
No Yes Plasmodium falciparum Dd2   19 16
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Streptococcus suis D12   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   1 1
No Yes Bacillus amyloliquefaciens LFB112   1 1
No Yes Bacillus amyloliquefaciens CC178   1 1
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens IT-45   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. BSP1   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus M1   1 1
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus RF122   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus 6850   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   1 1
No Yes Staphylococcus aureus subsp. aureus VC40   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus LGA251   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Staphylococcus aureus subsp. aureus 55/2053   1 1
No Yes Staphylococcus aureus subsp. aureus TCH60   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   1 1
No Yes Staphylococcus aureus subsp. aureus MSSA476   1 1
No Yes Staphylococcus aureus subsp. aureus MRSA252   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 988 890
No Yes Homo sapiens (NCBI version) Human 324 296
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 218 191
No Yes Heliconius numata (Incomplete)   72 46
No Yes Loa loa v3.3 (Request) Eye worm 91 75
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 84 78
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 80 70
No Yes Moniliophthora perniciosa FA553 (Genome survey)   11 10
No Yes Encephalitozoon intestinalis (endoparasite)   9 9
No Yes Encephalitozoon cuniculi (endoparasite)   9 9
No Yes Picea sitchensis (Incomplete) Sitka spruce 18 16
No Yes Lotus japonicus (Early assembly)   97 77
No Yes Malus x domestica (Duplicate) Apple 347 271
No Yes Ricinus communis (Early assembly) Castor bean 97 84
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   174 163
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 150 118
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 151 119
No Yes Phoenix dactylifera (Early draft) Date palm 50 45
No Yes Homo sapiens 69_37 Human 239 207
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 197 177
No Yes Gorilla gorilla 69_3.1 Western gorilla 214 198
No Yes Pongo abelii 69_2 Sumatran orangutan 203 182
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 193 175
No Yes Macaca mulatta 69_1 Rhesus monkey 212 192
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 220 201
No Yes Otolemur garnettii 69_3 Small-eared galago 200 185
No Yes Microcebus murinus 69_1 Gray mouse lemur 136 126
No Yes Rattus norvegicus 69_3.4 Norway rat 243 218
No Yes Mus musculus 69_38 House mouse 217 190
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 146 135
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 172 163
No Yes Cavia porcellus 69_3 Domestic guinea pig 189 178
No Yes Oryctolagus cuniculus 69_2 Rabbit 195 186
No Yes Ochotona princeps 69 American pika 138 126
No Yes Tupaia belangeri 69 Northern tree shrew 123 117
No Yes Sus scrofa 69_10.2 Pig 191 174
No Yes Bos taurus 69_3.1 Cattle 202 183
No Yes Vicugna pacos 69_1 Alpaca 99 94
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 175 159
No Yes Mustela putorius furo 69_1.0 Domestic ferret 193 178
No Yes Ailuropoda melanoleuca 69_1 Giant panda 192 179
No Yes Canis familiaris 69_3.1 Dog 202 183
No Yes Felis catus 69 Domestic cat 130 115
No Yes Equus caballus 69_2 Horse 194 179
No Yes Myotis lucifugus 69_2.0 Little brown bat 203 189
No Yes Pteropus vampyrus 69_1 Large flying fox 176 161
No Yes Sorex araneus 69_1 European shrew 116 113
No Yes Erinaceus europaeus 69 Western European hedgehog 113 110
No Yes Procavia capensis 69_1 Cape rock hyrax 138 124
No Yes Loxodonta africana 69_3 African savanna elephant 200 185
No Yes Echinops telfairi 69 Small Madagascar hedgehog 139 134
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 114 111
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 110 104
No Yes Macropus eugenii 69_1.0 Tammar wallaby 153 141
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 182 165
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 200 181
No Yes Ornithorhynchus anatinus 69_5 Platypus 149 136
No Yes Petromyzon marinus 69_7.0 Sea lamprey 96 85
No Yes Meleagris gallopavo 69_2 Turkey 132 123
No Yes Gallus gallus 69_2 Chicken 159 143
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 158 143
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 154 141
No Yes Anolis carolinensis 69_2.0 Green anole 174 157
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 178 159
No Yes Latimeria chalumnae 69_1 Coelacanth 181 169
No Yes Gadus morhua 69_1 Atlantic cod 214 200
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 232 217
No Yes Takifugu rubripes 69_4 Torafugu 222 209
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 238 214
No Yes Oryzias latipes 69_1 Japanese medaka 218 197
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 236 222
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 231 217
No Yes Danio rerio 69_9 Zebrafish 259 234
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 68 57
No Yes Ciona intestinalis 69 Vase tunicate 103 90
No Yes Drosophila melanogaster 69_5 Fruit fly 114 90
No Yes Caenorhabditis elegans 69_215 Roundworm 102 86
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 31 26
No Yes Arabidopsis thaliana 10 Thale cress 177 134
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Core Eukaryotic Genes 458 (CEGMA)   30 30
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   169957 150215
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 5
No Yes Protozoadb 2010_08 (Protozoadb)   1519 1350
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   11467 9796
No Yes Termite Protist Endosymbiont Community (meta-genome)   3 2
No Yes Uniprot 2018_03 genome   132153 112843
No Yes Global Ocean Sampling Expedition (GOS)   574 527
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes NCBI viral sequences (Viral)   97 96
No Yes PDB chains (SCOP 1.75) (PDB)   156 155
No Yes Protein Data Bank (all PDB sequenc)   2534 2451
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4332 4332
No Yes TargetDB (Targets)   953 740
No Yes UniProt viral sequences (Viral)   110 100

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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