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  Home > Genomes > Felis catus 76_6.2 > Spectrin repeat domains


Spectrin repeat superfamily domain assignments
in
Felis catus 76_6.2

Assignment details

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Felis catus 76_6.2 has 320 significant domains in 52 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSFCAP00000000047   1.44e-21   6504-6659   Spectrin repeat  
  1.3e-19   59-199   Spectrin repeat  
  2.09e-19   6883-6997   Spectrin repeat  
  6.86e-19   6284-6408   Spectrin repeat  
  2.88e-18   1779-1901   Spectrin repeat  
  5.47e-17   5419-5561   Spectrin repeat  
  5.63e-17   5533-5674   Spectrin repeat  
  1.28e-16   2953-3110   Spectrin repeat  
  1.68e-16   5876-6007   Spectrin repeat  
  0.00000000000000103   1563-1687   Spectrin repeat  
  0.00000000000000259   905-1034   Spectrin repeat  
  0.0000000000000055   2335-2451   Spectrin repeat  
  0.00000000000000804   3508-3651   Spectrin repeat  
  0.000000000000017   5208-5348   Spectrin repeat  
  0.0000000000000327   2735-2891   Spectrin repeat  
  0.0000000000000494   2207-2328   Spectrin repeat  
  0.00000000000072   6074-6225   Spectrin repeat  
  0.000000000000733   5803-5910   Spectrin repeat  
  0.00000000000223   1123-1249   Spectrin repeat  
  0.0000000000024   6959-7106   Spectrin repeat  
  0.0000000000032   6412-6522   Spectrin repeat  
  0.00000000000336   1277-1394   Spectrin repeat  
  0.00000000000537   2013-2145   Spectrin repeat  
  0.00000000000618   691-846   Spectrin repeat  
  0.000000000104   4378-4514   Spectrin repeat  
  0.000000000262   4158-4275   Spectrin repeat  
  0.00000000108   3403-3502   Spectrin repeat  
  0.0000000417   364-513   Spectrin repeat  
  0.0000000432   1928-2039   Spectrin repeat  
  0.0000000768   1477-1575   Spectrin repeat  
  0.000000151   152-306   Spectrin repeat  
  0.000000192   3920-4039   Spectrin repeat  
  0.00000105   4038-4134   Spectrin repeat  
  0.00000353   2652-2780   Spectrin repeat  
  0.0000039   5003-5086   Spectrin repeat  
  0.00000406   4826-4931   Spectrin repeat  
  0.00000623   1690-1790   Spectrin repeat  
  0.0000122   3323-3433   Spectrin repeat  
  0.0000236   589-704   Spectrin repeat  
  0.000024   2447-2577   Spectrin repeat  
  0.000081   4524-4638   Spectrin repeat  
  0.000403   5132-5245   Spectrin repeat  
  0.00109   3647-3765   Spectrin repeat  
  0.00144   3107-3219   Spectrin repeat  
  0.0245   2564-2669   Spectrin repeat  
ENSFCAP00000000773   5.76e-34   247-369   Spectrin repeat  
  4.32e-31   483-604   Spectrin repeat  
  5.63e-27   370-478   Spectrin repeat  
  9.21e-23   607-719   Spectrin repeat  
ENSFCAP00000000962   1.11e-29   304-424   Spectrin repeat  
  6.72e-23   433-535   Spectrin repeat  
  1.92e-21   1621-1723   Spectrin repeat  
  5.01e-21   1780-1929   Spectrin repeat  
  5.76e-21   1888-2043   Spectrin repeat  
  3.19e-19   840-978   Spectrin repeat  
  1.96e-17   1306-1408   Spectrin repeat  
  0.0000000000000144   2014-2108   Spectrin repeat  
  0.0000000000000301   1083-1198   Spectrin repeat  
  0.000000000000537   1166-1279   Spectrin repeat  
  0.00000000000374   526-607   Spectrin repeat  
  0.0000000000929   1377-1474   Spectrin repeat  
  0.0000000023   1479-1563   Spectrin repeat  
  0.00137   964-1075   Spectrin repeat  
ENSFCAP00000002968   5.37e-34   299-420   Spectrin repeat  
  1.68e-29   605-745   Spectrin repeat  
  2.04e-28   1651-1797   Spectrin repeat  
  4.71e-28   1014-1168   Spectrin repeat  
  1.57e-26   1855-2009   Spectrin repeat  
  5.17e-25   1536-1679   Spectrin repeat  
  1.66e-24   1233-1379   Spectrin repeat  
  1.77e-23   819-953   Spectrin repeat  
  3.14e-22   429-530   Spectrin repeat  
  1.6e-19   749-853   Spectrin repeat  
  6.02e-19   533-640   Spectrin repeat  
  0.000000000000209   1355-1451   Spectrin repeat  
  0.0000000000173   2015-2074   Spectrin repeat  
ENSFCAP00000004105   1.8e-33   253-375   Spectrin repeat  
  1.31e-31   489-610   Spectrin repeat  
  2.22e-23   376-484   Spectrin repeat  
  1.18e-22   614-725   Spectrin repeat  
ENSFCAP00000004223   0.0000000000000114   247-372,562-590   Spectrin repeat  
  0.000000892   674-785,813-840   Spectrin repeat  
  0.00000173   73-191   Spectrin repeat  
  0.00234   550-681   Spectrin repeat  
ENSFCAP00000005128   1.87e-32   280-402   Spectrin repeat  
  5.63e-32   517-638   Spectrin repeat  
  6.02e-22   397-513   Spectrin repeat  
  6.48e-20   642-753   Spectrin repeat  
ENSFCAP00000005428   1.19e-36   741-880   Spectrin repeat  
  1.24e-35   203-353   Spectrin repeat  
  4.39e-35   1824-1979   Spectrin repeat  
  2.23e-34   521-673   Spectrin repeat  
  6.94e-34   1395-1547   Spectrin repeat  
  2.12e-33   1287-1438   Spectrin repeat  
  7.44e-31   309-461   Spectrin repeat  
  1.44e-30   12-145   Spectrin repeat  
  2.62e-29   1499-1659   Spectrin repeat  
  1.31e-28   1929-2084   Spectrin repeat  
  1.57e-27   1657-1775   Spectrin repeat  
  5.76e-26   2091-2204   Spectrin repeat  
  1.02e-24   1207-1313   Spectrin repeat  
  1.31e-20   2206-2321   Spectrin repeat  
  5.6e-20   1057-1175   Spectrin repeat  
  4.03e-19   889-960   Spectrin repeat  
  0.0000216   472-537   Spectrin repeat  
ENSFCAP00000005635   4.56e-21   258-394   Spectrin repeat  
  1.57e-20   1055-1192   Spectrin repeat  
  5.68e-20   805-958   Spectrin repeat  
  2.55e-18   479-620   Spectrin repeat  
  0.00000000948   625-732   Spectrin repeat  
  0.0000000222   172-288   Spectrin repeat  
ENSFCAP00000006149   0.0000461   119-201   Spectrin repeat  
ENSFCAP00000006315   2.49e-19   278-414   Spectrin repeat  
  2.88e-18   1098-1235   Spectrin repeat  
  1.13e-17   500-641   Spectrin repeat  
  0.0000000000000144   842-1001   Spectrin repeat  
  0.00000000929   191-309   Spectrin repeat  
  0.00000432   646-766   Spectrin repeat  
ENSFCAP00000006691   0.0000000143   242-383   Spectrin repeat  
ENSFCAP00000006860   9.55e-34   297-419   Spectrin repeat  
  1.05e-29   907-1062   Spectrin repeat  
  1e-27   1644-1797   Spectrin repeat  
  3.96e-27   1014-1168   Spectrin repeat  
  3.4e-26   1855-2010   Spectrin repeat  
  6.77e-26   1226-1379   Spectrin repeat  
  9.6e-25   697-813   Spectrin repeat  
  1.44e-21   532-640   Spectrin repeat  
  2.09e-20   1483-1594   Spectrin repeat  
  2.22e-19   1381-1493   Spectrin repeat  
  2.88e-19   429-527   Spectrin repeat  
  0.000000000187   2015-2076   Spectrin repeat  
ENSFCAP00000009306   0.00000000000000205   845-973,1000-1027   Spectrin repeat  
  0.00000000000209   335-464   Spectrin repeat  
  0.0000117   198-281   Spectrin repeat  
ENSFCAP00000009835   7.59e-36   282-403   Spectrin repeat  
  1.18e-31   590-729   Spectrin repeat  
  5.28e-29   998-1153   Spectrin repeat  
  6.84e-28   1210-1363   Spectrin repeat  
  7.33e-28   891-1046   Spectrin repeat  
  2.26e-27   1846-2000   Spectrin repeat  
  1.17e-26   798-938   Spectrin repeat  
  1.12e-24   1440-1577   Spectrin repeat  
  1.7e-23   412-515   Spectrin repeat  
  6.41e-23   1686-1791   Spectrin repeat  
  2.75e-22   1582-1683   Spectrin repeat  
  5.63e-22   516-624   Spectrin repeat  
  9.95e-18   1371-1469   Spectrin repeat  
  0.000000000000183   1981-2066   Spectrin repeat  
  0.0122   1156-1229   Spectrin repeat  
ENSFCAP00000010157   0.0000000000432   774-880   Spectrin repeat  
  0.000000589   1079-1188   Spectrin repeat  
  0.00000864   960-1055   Spectrin repeat  
ENSFCAP00000011220   0.0000000000256   60-189   Spectrin repeat  
  0.0000000000301   214-329   Spectrin repeat  
  0.000000000878   601-742   Spectrin repeat  
  0.00000106   502-609   Spectrin repeat  
  0.0132   425-506   Spectrin repeat  
ENSFCAP00000011534   1.08e-26   1922-2078   Spectrin repeat  
  4.84e-19   314-418   Spectrin repeat  
  8.16e-19   2503-2634   Spectrin repeat  
  3.27e-17   386-526   Spectrin repeat  
  9.64e-17   493-631   Spectrin repeat  
  3.89e-16   963-1107   Spectrin repeat  
  0.0000000000000353   2680-2799   Spectrin repeat  
  0.0000000000000732   2232-2332   Spectrin repeat  
  0.0000000000000864   743-901   Spectrin repeat  
  0.00000000000158   1181-1332   Spectrin repeat  
  0.00000000000288   1491-1646   Spectrin repeat  
  0.0000000000129   2392-2516   Spectrin repeat  
  0.00000000249   2073-2177   Spectrin repeat  
  0.0000000272   1619-1744   Spectrin repeat  
  0.000272   1305-1434   Spectrin repeat  
ENSFCAP00000012473   1.78e-32   1712-1864   Spectrin repeat  
  2.33e-32   415-571   Spectrin repeat  
  6.84e-31   1498-1654   Spectrin repeat  
  1.19e-30   210-358   Spectrin repeat  
  1.55e-29   748-887   Spectrin repeat  
  4.45e-28   1392-1538   Spectrin repeat  
  7.72e-28   521-675   Spectrin repeat  
  1.83e-27   112-251   Spectrin repeat  
  3.53e-27   1816-1973   Spectrin repeat  
  5.37e-27   1286-1429   Spectrin repeat  
  2.23e-25   10-145   Spectrin repeat  
  1.02e-22   681-783   Spectrin repeat  
  1.7e-22   2085-2198   Spectrin repeat  
  2.36e-17   2204-2311   Spectrin repeat  
  2.36e-16   1942-2078   Spectrin repeat  
  0.000000000000187   891-963   Spectrin repeat  
  0.00000000036   1073-1160   Spectrin repeat  
ENSFCAP00000013215   0.00000000000000183   278-415   Spectrin repeat  
  0.036   425-516   Spectrin repeat  
ENSFCAP00000013265   0.000000000000116   320-416   Spectrin repeat  
ENSFCAP00000014141   4.98e-31   6095-6253   Spectrin repeat  
  8.23e-29   6534-6692   Spectrin repeat  
  1.23e-28   5215-5375   Spectrin repeat  
  7.33e-24   241-357   Spectrin repeat  
  1.32e-23   5326-5471   Spectrin repeat  
  2.21e-23   4780-4937   Spectrin repeat  
  8.9e-23   6687-6804   Spectrin repeat  
  1.04e-21   6335-6473   Spectrin repeat  
  8.1e-21   6753-6880,6907-6938   Spectrin repeat  
  9.42e-21   5667-5810   Spectrin repeat  
  4.98e-19   5995-6109   Spectrin repeat  
  7.2e-17   5544-5701   Spectrin repeat  
  2.96e-16   4994-5154   Spectrin repeat  
  0.0000000000000012   6253-6367   Spectrin repeat  
  0.00000000000000192   4492-4611   Spectrin repeat  
  0.00000000000000216   1154-1284,1311-1337   Spectrin repeat  
  0.0000000000000161   4670-4790   Spectrin repeat  
  0.0000000000000288   4379-4500   Spectrin repeat  
  0.0000000000000693   3753-3877   Spectrin repeat  
  0.00000000000101   4218-4320   Spectrin repeat  
  0.00000000000168   613-715   Spectrin repeat  
  0.00000000000183   4000-4136   Spectrin repeat  
  0.00000000000264   3919-4035   Spectrin repeat  
  0.0000000000308   5894-5998   Spectrin repeat  
  0.000000000138   5815-5921   Spectrin repeat  
  0.00000000157   522-612   Spectrin repeat  
  0.0000000017   3540-3657   Spectrin repeat  
  0.00000446   1355-1471   Spectrin repeat  
  0.0000109   3375-3526   Spectrin repeat  
  0.00115   4148-4254   Spectrin repeat  
  0.00935   5129-5207   Spectrin repeat  
  0.013   720-794   Spectrin repeat  
  0.0677   1039-1146   Spectrin repeat  
ENSFCAP00000014272   0.00000000000000288   220-341   Spectrin repeat  
  0.0000000000144   78-176   Spectrin repeat  
ENSFCAP00000016344   0.00000000000995   433-572   Spectrin repeat  
  0.000273   214-342   Spectrin repeat  
  0.00256   346-469   Spectrin repeat  
ENSFCAP00000016373   0.0000151   505-577   Spectrin repeat  
  0.0832   329-411   Spectrin repeat  
ENSFCAP00000016723   0.000000000000366   2-91   Spectrin repeat  
ENSFCAP00000017190   2.24e-33   235-357   Spectrin repeat  
  1.44e-31   471-592   Spectrin repeat  
  2.36e-23   358-466   Spectrin repeat  
  1.22e-22   596-707   Spectrin repeat  
ENSFCAP00000017333   0.00000000705   3-82   Spectrin repeat  
ENSFCAP00000017370   0.0000273   98-186   Spectrin repeat  
ENSFCAP00000017514   0.00000000000000236   99-205   Spectrin repeat  
  0.0000000000000072   1-91   Spectrin repeat  
  0.0101   196-241   Spectrin repeat  
ENSFCAP00000017733   0.00000013   387-496   Spectrin repeat  
  0.00000018   1449-1607   Spectrin repeat  
  0.00000308   57-176   Spectrin repeat  
  0.00000767   243-359   Spectrin repeat  
  0.0000125   1355-1459   Spectrin repeat  
  0.0000148   877-973   Spectrin repeat  
  0.00046   924-1080   Spectrin repeat  
ENSFCAP00000017964   0.0000000127   3-89   Spectrin repeat  
ENSFCAP00000018262   2.62e-16   1585-1736   Spectrin repeat  
  0.00000000000000189   617-769   Spectrin repeat  
  0.00000000000152   1479-1632   Spectrin repeat  
  0.0000000000681   781-887   Spectrin repeat  
  0.00000000144   962-1095   Spectrin repeat  
  0.0000000124   1310-1423   Spectrin repeat  
  0.00118   1052-1190   Spectrin repeat  
  0.00166   896-985   Spectrin repeat  
  0.00326   314-440   Spectrin repeat  
  0.0158   534-626   Spectrin repeat  
ENSFCAP00000018428   0.000000134   198-307   Spectrin repeat  
  0.000000268   718-829,857-884   Spectrin repeat  
  0.000689   591-702   Spectrin repeat  
  0.0345   155-200   Spectrin repeat  
ENSFCAP00000018469   0.0000000000000144   277-422   Spectrin repeat  
  0.00000000137   177-302   Spectrin repeat  
ENSFCAP00000018857   0.000000677   207-351   Spectrin repeat  
  0.000000907   47-124   Spectrin repeat  
  0.000992   975-1117   Spectrin repeat  
  0.00329   132-235   Spectrin repeat  
  0.00417   696-773   Spectrin repeat  
  0.0144   355-448   Spectrin repeat  
  0.0158   861-997   Spectrin repeat  
ENSFCAP00000019430   0.00000000000471   671-778   Spectrin repeat  
  0.000000589   977-1086   Spectrin repeat  
  0.00000878   858-953   Spectrin repeat  
ENSFCAP00000019533   2.88e-16   666-800   Spectrin repeat  
  0.0000000000157   349-487   Spectrin repeat  
  0.000000489   148-274   Spectrin repeat  
  0.0959   590-697   Spectrin repeat  
ENSFCAP00000020831   5.61e-17   1-91   Spectrin repeat  
  0.00000000317   71-168   Spectrin repeat  
  0.0157   229-310   Spectrin repeat  
ENSFCAP00000021004   4.45e-28   295-414   Spectrin repeat  
  6.79e-28   1262-1416   Spectrin repeat  
  1.44e-25   2738-2889   Spectrin repeat  
  6.48e-25   2314-2467   Spectrin repeat  
  8.51e-25   2524-2679   Spectrin repeat  
  1.44e-21   640-741   Spectrin repeat  
  1.96e-21   1488-1615   Spectrin repeat  
  2.16e-21   2118-2252   Spectrin repeat  
  9.16e-21   1574-1708   Spectrin repeat  
  3.17e-20   2894-2995   Spectrin repeat  
  6e-20   1697-1835   Spectrin repeat  
  1.32e-19   3282-3420   Spectrin repeat  
  1.85e-19   3159-3314   Spectrin repeat  
  1.26e-17   860-996   Spectrin repeat  
  2.64e-16   2968-3097   Spectrin repeat  
  0.00000000000000144   1105-1206   Spectrin repeat  
  0.000000000000173   1832-1947   Spectrin repeat  
  0.000000000000301   746-808,854-895   Spectrin repeat  
  0.0000000000018   1938-2052   Spectrin repeat  
  0.00000000000432   413-526   Spectrin repeat  
  0.000000000144   537-636   Spectrin repeat  
  0.000000000662   2052-2146   Spectrin repeat  
  0.00000000072   3423-3484   Spectrin repeat  
  0.00000000273   1387-1484   Spectrin repeat  
ENSFCAP00000021436   0.000000000518   57-154   Spectrin repeat  
ENSFCAP00000021777   1.67e-18   12-139   Spectrin repeat  
  8.9e-18   162-301   Spectrin repeat  
ENSFCAP00000021862   0.000000000471   2-86   Spectrin repeat  
ENSFCAP00000022209   4.68e-35   202-324   Spectrin repeat  
  7.72e-30   438-556   Spectrin repeat  
  3.8e-25   325-433   Spectrin repeat  
  2.16e-23   562-674   Spectrin repeat  
ENSFCAP00000022504   0.0000000000000537   118-258   Spectrin repeat  
  0.0000000000196   649-787   Spectrin repeat  
  0.000000662   448-574   Spectrin repeat  
  0.00892   270-361   Spectrin repeat  
  0.0129   867-994   Spectrin repeat  
ENSFCAP00000023133   0.0000000022   1-65   Spectrin repeat  
ENSFCAP00000023677   0.000000000533   623-723   Spectrin repeat  
ENSFCAP00000023786   5.28e-30   4137-4295   Spectrin repeat  
  1.1e-28   3963-4080   Spectrin repeat  
  3.14e-26   4377-4512   Spectrin repeat  
  6.54e-25   3478-3637   Spectrin repeat  
  1.44e-24   2936-3092   Spectrin repeat  
  3.53e-23   3719-3859   Spectrin repeat  
  3.8e-23   3809-3960   Spectrin repeat  
  2.76e-21   4507-4623   Spectrin repeat  
  5.38e-21   1698-1857   Spectrin repeat  
  3.27e-20   4293-4407   Spectrin repeat  
  1.26e-19   3371-3528   Spectrin repeat  
  2.16e-19   2499-2653   Spectrin repeat  
  2.2e-19   2166-2294   Spectrin repeat  
  4.53e-18   2712-2872   Spectrin repeat  
  4.17e-17   3087-3204   Spectrin repeat  
  1.58e-16   376-478   Spectrin repeat  
  7.28e-16   911-1039,1066-1094   Spectrin repeat  
  0.00000000000000131   3154-3304   Spectrin repeat  
  0.000000000000106   2387-2509   Spectrin repeat  
  0.000000000000173   1475-1584   Spectrin repeat  
  0.00000000000082   3636-3748   Spectrin repeat  
  0.00000000000847   4633-4704,4735-4764   Spectrin repeat  
  0.000000000225   1606-1712   Spectrin repeat  
  0.000000000594   1915-2035   Spectrin repeat  
  0.0000000023   2076-2183   Spectrin repeat  
  0.0000000038   283-375   Spectrin repeat  
  0.00000000417   451-558,679-699   Spectrin repeat  
  0.0000000267   2298-2400   Spectrin repeat  
  0.000733   1230-1342   Spectrin repeat  
  0.00497   705-846   Spectrin repeat  
ENSFCAP00000024070   0.00000236   2-63   Spectrin repeat  
ENSFCAP00000024799   0.00000157   65-108   Spectrin repeat  
ENSFCAP00000024919   0.0000272   12-61   Spectrin repeat  
ENSFCAP00000025575   0.00000000317   4-89   Spectrin repeat  
 
Weak hits:
ENSFCAP00000000376   0.0316   219-283   Spectrin repeat  
ENSFCAP00000000556   0.0288   10-88   Spectrin repeat  
ENSFCAP00000002536   0.0522   430-469   Spectrin repeat  
ENSFCAP00000003669   0.0101   309-411   Spectrin repeat  
ENSFCAP00000004445   0.0672   808-906   Spectrin repeat  
ENSFCAP00000005825   0.0475   166-232   Spectrin repeat  
ENSFCAP00000007781   0.0237   54-132   Spectrin repeat  
ENSFCAP00000008145   0.00403   38-135   Spectrin repeat  
ENSFCAP00000010231   0.0213   345-402   Spectrin repeat  
ENSFCAP00000012521   0.00767   315-388   Spectrin repeat  
ENSFCAP00000013111   0.00558   178-210   Spectrin repeat  
ENSFCAP00000013366   0.0446   48-109   Spectrin repeat  
ENSFCAP00000014264   0.00827   146-246   Spectrin repeat  
ENSFCAP00000018135   0.00122   28-76   Spectrin repeat  
ENSFCAP00000020620   0.0242   24-76   Spectrin repeat  
ENSFCAP00000021859   0.0082   646-725   Spectrin repeat  
ENSFCAP00000023519   0.00168   599-663   Spectrin repeat  
ENSFCAP00000023918   0.0201   248-345   Spectrin repeat  
ENSFCAP00000024566   0.0432   11-105   Spectrin repeat  
ENSFCAP00000024956   0.0671   166-235   Spectrin repeat  
ENSFCAP00000025677   0.00112   230-335   Spectrin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   649625 649625
No Yes Homo sapiens 76_38 Human 1347 188
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 483 54
No Yes Pongo abelii 76_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 266 33
No Yes Papio anubis 76 Olive baboon 276 35
No Yes Macaca mulatta 76_1 Rhesus monkey 743 89
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 834 100
No Yes Otolemur garnettii 76_3 Small-eared galago 324 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 76_5.0 Norway rat 406 50
No Yes Mus musculus 76_38 House mouse 985 134
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 300 39
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 310 37
No Yes Cavia porcellus 76_3 Domestic guinea pig 324 38
No Yes Oryctolagus cuniculus 76_2 Rabbit 301 38
No Yes Ochotona princeps 76 American pika 249 27
No Yes Tupaia belangeri 76 Northern tree shrew 240 28
No Yes Sus scrofa 76_10.2 Pig 279 49
No Yes Bos taurus 76_3.1 Cattle 335 37
No Yes Ovis aries 76_3.1 Sheep 309 40
No Yes Vicugna pacos 76_1 Alpaca 190 20
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 76_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 76_1 Giant panda 448 46
No Yes Canis familiaris 76_3.1 Dog 503 57
No Yes Felis catus 76_6.2 Domestic cat 320 52
No Yes Equus caballus 76_2 Horse 738 71
No Yes Myotis lucifugus 76_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 76_1 Large flying fox 289 32
No Yes Sorex araneus 76_1 European shrew 190 23
No Yes Erinaceus europaeus 76 Western European hedgehog 184 20
No Yes Procavia capensis 76_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 76_3 African savanna elephant 421 53
No Yes Echinops telfairi 76 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 391 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 76_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 355 47
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 360 39
No Yes Ornithorhynchus anatinus 76_5 Platypus 341 71
No Yes Saccoglossus kowalevskii v3.0   2079 67
No Yes Petromyzon marinus 76_7.0 Sea lamprey 172 32
No Yes Meleagris gallopavo 76_2 Turkey 299 37
No Yes Gallus gallus 76_4 Chicken 332 35
No Yes Anas platyrhynchos 76_1.0 Mallard 292 36
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 264 34
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 291 32
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 266 39
No Yes Anolis carolinensis 76_2.0 Green anole 299 35
No Yes Xenopus laevis African clawed frog 101 33
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 313 41
No Yes Latimeria chalumnae 76_1 Coelacanth 352 47
No Yes Lepisosteus oculatus 76 Spotted gar 489 49
No Yes Gadus morhua 76_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 397 56
No Yes Takifugu rubripes 76_4 Torafugu 1586 184
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 453 55
No Yes Oryzias latipes 76_1 Japanese medaka 351 49
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 349 45
No Yes Poecilia formosa 76 Amazon molly 366 42
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 456 53
No Yes Astyanax mexicanus 76 Mexican tetra 398 58
No Yes Danio rerio 76_9 Zebrafish 590 93
No Yes Oikopleura dioica   51 13
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 180 28
No Yes Ciona intestinalis 76 Vase tunicate 69 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 287 42
No Yes Adineta vaga   157 43
No Yes Octopus bimaculoides 280   368 41
No Yes Crassostrea gigas 22 Pacific oyster 185 21
No Yes Lottia gigantea Owl limpet 185 16
No Yes Helobdella robusta   96 16
No Yes Capitella sp. I   182 19
No Yes Danaus plexippus OGS1.0 Monarch butterfly 151 21
No Yes Heliconius melpomene Postman butterfly 125 15
No Yes Bombyx mori Domestic silkworm 132 44
No Yes Nasonia vitripennis Jewel wasp 131 8
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 389 45
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 159 18
No Yes Linepithema humile v1.1 Argentine ant 150 23
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 157 24
No Yes Solenopsis invicta v.2.2.3 Red fire ant 131 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 153 13
No Yes Atta cephalotes v1.1   153 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 172 16
No Yes Lucilia cuprina Australian sheep blowfly 149 15
No Yes Drosophila grimshawi 1.3   161 14
No Yes Drosophila willistoni 1.3   160 13
No Yes Drosophila pseudoobscura 2.13   152 13
No Yes Drosophila persimilis 1.3   114 19
No Yes Drosophila suzukii   150 12
No Yes Drosophila yakuba 1.3   160 12
No Yes Drosophila simulans 1.3   80 16
No Yes Drosophila sechellia 1.3   140 14
No Yes Drosophila melanogaster 76_5 Fruit fly 1379 76
No Yes Drosophila erecta 1.3   158 12
No Yes Drosophila ananassae 1.3   157 11
No Yes Drosophila virilis 1.2   125 14
No Yes Drosophila mojavensis 1.3   158 15
No Yes Megaselia scalaris 22   92 14
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 129 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 120 18
No Yes Anopheles darlingi 22 American malaria mosquito 91 11
No Yes Anopheles gambiae 49_3j African malaria mosquito 140 11
No Yes Tribolium castaneum 3.0 Red flour beetle 158 12
No Yes Pediculus humanus corporis (Early assembly) Human body louse 163 16
No Yes Acyrthosiphon pisum Pea aphid 147 16
No Yes Rhodnius prolixus 22   130 18
No Yes Daphnia pulex Common water flea 197 26
No Yes Strigamia maritima 22   161 13
No Yes Sarcoptes scabiei   112 9
No Yes Tetranychus urticae Two-spotted spider mite 91 23
No Yes Ixodes scapularis (Preliminary) Black-legged tick 56 11
No Yes Pristionchus pacificus   91 24
No Yes Meloidogyne incognita Southern root-knot nematode 48 12
No Yes Meloidogyne hapla   33 8
No Yes Onchocerca volvulus 22   100 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 149 17
No Yes Caenorhabditis japonica   107 12
No Yes Caenorhabditis brenneri   135 19
No Yes Caenorhabditis remanei   99 19
No Yes Caenorhabditis elegans 76_235 Roundworm 328 33
No Yes Caenorhabditis briggsae 2   91 11
No Yes Trichinella spiralis 22   102 13
No Yes Hymenolepis microstoma   93 13
No Yes Echinococcus multilocularis   94 14
No Yes Echinococcus granulosus   98 12
No Yes Taenia solium Pork tapeworm 84 16
No Yes Schistosoma mansoni   105 22
No Yes Mnemiopsis leidyi Sea walnut 61 15
No Yes Thelohanellus kitauei   3 1
No Yes Acropora digitifera v1.0   185 47
No Yes Nematostella vectensis 1.0 Starlet sea anemone 134 26
No Yes Hydra vulgaris   81 17
No Yes Amphimedon queenslandica   94 17
No Yes Trichoplax adhaerens   135 14
No Yes Proterospongia sp. ATCC 50818   79 12
No Yes Monosiga brevicollis   52 9
No Yes Sphaeroforma arctica JP610   4 1
No Yes Capsaspora owczarzaki ATCC 30864   20 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 2
No Yes Mortierella verticillata NRRL 6337   2 1
No Yes Phycomyces blakesleeanus   2 1
No Yes Rhizopus oryzae RA 99-880   6 4
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   8 5
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 3
No Yes Piloderma croceum F 1598 v1.0   3 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   3 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   3 2
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   4 3
No Yes Postia placenta   3 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   3 2
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   3 2
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   2 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   3 2
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   3 2
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   3 2
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 2
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   4 3
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   2 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   2 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 1
No Yes Penicillium chrysogenum v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus terreus NIH2624   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   2 1
No Yes Tuber melanosporum Vittad Perigord truffle 2 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   5 3
No Yes Spizellomyces punctatus DAOM BR117   2 1
No Yes Dictyostelium discoideum   4 1
No Yes Dictyostelium purpureum   4 1
No Yes Entamoeba dispar 1.2   3 3
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   2 1
No Yes Capsella rubella v183   1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   6 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Trypanosoma vivax   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   2 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   2 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 2
No Yes Trichomonas vaginalis   2 2
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Meiothermus ruber DSM 1279   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Fervidicoccus fontis Kam940   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 285 54
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 914 52
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 193 16
No Yes Ascaris suum Victoria/Ghent Pig roundworm 98 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 240 26
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   2 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   2 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   2 1
No Yes Batrachochytrium dendrobatidis JAM81   2 1
No Yes Thermus thermophilus HB8   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   3 3
No Yes Shigella dysenteriae 1617   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1579 208
No Yes Homo sapiens (NCBI version) Human 646 76
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 307 33
No Yes Heliconius numata (Incomplete)   12 9
No Yes Loa loa v3.3 (Request) Eye worm 109 13
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 106 42
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 97 14
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Homo sapiens 69_37 Human 400 38
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 260 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 282 36
No Yes Pongo abelii 69_2 Sumatran orangutan 310 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 245 32
No Yes Macaca mulatta 69_1 Rhesus monkey 304 35
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 310 33
No Yes Otolemur garnettii 69_3 Small-eared galago 312 34
No Yes Microcebus murinus 69_1 Gray mouse lemur 241 28
No Yes Rattus norvegicus 69_3.4 Norway rat 297 34
No Yes Mus musculus 69_38 House mouse 266 34
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 259 30
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 288 33
No Yes Cavia porcellus 69_3 Domestic guinea pig 309 36
No Yes Oryctolagus cuniculus 69_2 Rabbit 257 39
No Yes Ochotona princeps 69 American pika 249 27
No Yes Tupaia belangeri 69 Northern tree shrew 240 28
No Yes Sus scrofa 69_10.2 Pig 232 39
No Yes Bos taurus 69_3.1 Cattle 304 34
No Yes Vicugna pacos 69_1 Alpaca 190 20
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 294 32
No Yes Mustela putorius furo 69_1.0 Domestic ferret 323 34
No Yes Ailuropoda melanoleuca 69_1 Giant panda 309 36
No Yes Canis familiaris 69_3.1 Dog 316 35
No Yes Felis catus 69 Domestic cat 181 28
No Yes Equus caballus 69_2 Horse 323 35
No Yes Myotis lucifugus 69_2.0 Little brown bat 255 38
No Yes Pteropus vampyrus 69_1 Large flying fox 289 32
No Yes Sorex araneus 69_1 European shrew 190 23
No Yes Erinaceus europaeus 69 Western European hedgehog 184 20
No Yes Procavia capensis 69_1 Cape rock hyrax 258 31
No Yes Loxodonta africana 69_3 African savanna elephant 262 34
No Yes Echinops telfairi 69 Small Madagascar hedgehog 228 29
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 205 25
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 165 18
No Yes Macropus eugenii 69_1.0 Tammar wallaby 248 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 250 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 325 34
No Yes Ornithorhynchus anatinus 69_5 Platypus 306 66
No Yes Petromyzon marinus 69_7.0 Sea lamprey 157 28
No Yes Meleagris gallopavo 69_2 Turkey 262 28
No Yes Gallus gallus 69_2 Chicken 284 29
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 257 33
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 233 33
No Yes Anolis carolinensis 69_2.0 Green anole 291 39
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 289 33
No Yes Latimeria chalumnae 69_1 Coelacanth 273 37
No Yes Gadus morhua 69_1 Atlantic cod 308 39
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 300 41
No Yes Takifugu rubripes 69_4 Torafugu 381 43
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 372 42
No Yes Oryzias latipes 69_1 Japanese medaka 317 38
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 349 45
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 373 40
No Yes Danio rerio 69_9 Zebrafish 340 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 24 7
No Yes Ciona intestinalis 69 Vase tunicate 65 10
No Yes Drosophila melanogaster 69_5 Fruit fly 124 10
No Yes Caenorhabditis elegans 69_215 Roundworm 103 11
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   5 5
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   387404 34306
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes Protozoadb 2010_08 (Protozoadb)   14 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10877 1400
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   159518 21102
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   39 34
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 11
No Yes Protein Data Bank (all PDB sequenc)   131 69
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   213 213
No Yes TargetDB (Targets)   200 79
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.