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  Home > Genomes > Proterospongia sp. ATCC 50818 > TNF receptor-like domains


TNF receptor-like superfamily domain assignments
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Proterospongia sp. ATCC 50818

Assignment details

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Proterospongia sp. ATCC 50818 has 76 significant domains in 37 proteins.

     

Sequence ID   Evalue   Region   Family  
PTSG_01383T0   0.0000895   1405-1441   TNF receptor-like  
  0.000259   1323-1362   TNF receptor-like  
  0.000392   925-958   TNF receptor-like  
  0.00118   966-998   TNF receptor-like  
  0.0297   1364-1408   TNF receptor-like  
  0.0565   844-882   TNF receptor-like  
  0.0753   1288-1319   TNF receptor-like  
PTSG_01599T0   0.0000942   293-341   TNF receptor-like  
PTSG_01887T0   0.0000000173   244-286   TNF receptor-like  
PTSG_01943T0   0.0000769   2862-2899   TNF receptor-like  
  0.0109   2263-2294   TNF receptor-like  
  0.0147   2213-2248   TNF receptor-like  
  0.0267   3922-3962   TNF receptor-like  
  0.031   3336-3383   TNF receptor-like  
  0.0314   3548-3592   TNF receptor-like  
  0.0361   1621-1664   TNF receptor-like  
  0.0942   1740-1769   TNF receptor-like  
PTSG_02061T0   0.00000024   467-512   TNF receptor-like  
  0.0383   516-558   TNF receptor-like  
PTSG_02374T0   0.00004   100-142   TNF receptor-like  
PTSG_02663T0   0.000000135   51-96   TNF receptor-like  
  0.000000235   479-519   TNF receptor-like  
  0.00000235   355-396   TNF receptor-like  
  0.00000265   690-728   TNF receptor-like  
  0.0000188   560-599   TNF receptor-like  
  0.000137   99-135   TNF receptor-like  
  0.000225   439-476   TNF receptor-like  
  0.00104   520-557   TNF receptor-like  
  0.0171   3-43   TNF receptor-like  
  0.0194   768-805   TNF receptor-like  
  0.0306   604-643   TNF receptor-like  
  0.0706   810-866   TNF receptor-like  
  0.0785   146-193   TNF receptor-like  
PTSG_03216T0   0.00000215   1068-1112   TNF receptor-like  
  0.00000432   901-937   TNF receptor-like  
  0.00000706   271-322   TNF receptor-like  
  0.000011   1416-1453   TNF receptor-like  
  0.0000471   324-364   TNF receptor-like  
  0.000139   406-443   TNF receptor-like  
  0.000334   1369-1418   TNF receptor-like  
  0.000377   532-571   TNF receptor-like  
  0.000968   1285-1327   TNF receptor-like  
  0.00184   944-986   TNF receptor-like  
  0.00278   1026-1062   TNF receptor-like  
  0.00706   446-477   TNF receptor-like  
  0.00785   1458-1501   TNF receptor-like  
  0.0255   984-1018   TNF receptor-like  
  0.0494   666-691   TNF receptor-like  
  0.0549   1211-1271   TNF receptor-like  
  0.0628   690-749   TNF receptor-like  
  0.0673   642-667   TNF receptor-like  
  0.1   1140-1164   TNF receptor-like  
PTSG_03311T0   0.0000324   291-339   TNF receptor-like  
PTSG_03993T0   0.0000000353   220-263   TNF receptor-like  
  0.00801   268-303   TNF receptor-like  
PTSG_05128T0   0.0000824   1261-1301   TNF receptor-like  
  0.0436   1223-1265   TNF receptor-like  
PTSG_05162T0   0.0000000824   862-903   TNF receptor-like  
  0.0000392   765-817   TNF receptor-like  
  0.000471   647-691   TNF receptor-like  
  0.00118   905-944   TNF receptor-like  
  0.0137   554-596   TNF receptor-like  
  0.037   820-853   TNF receptor-like  
PTSG_05577T0   0.0000385   289-331   TNF receptor-like  
  0.000589   70-114   TNF receptor-like  
PTSG_06003T0   0.0000108   337-381   TNF receptor-like  
  0.000294   167-220   TNF receptor-like  
  0.000383   121-164   TNF receptor-like  
  0.00145   86-123   TNF receptor-like  
  0.0224   228-280   TNF receptor-like  
PTSG_06646T0   0.000000268   2401-2443   TNF receptor-like  
  0.0000369   2060-2100   TNF receptor-like  
  0.000357   2305-2357   TNF receptor-like  
  0.000746   1968-2012   TNF receptor-like  
  0.00107   2236-2303   TNF receptor-like  
  0.0253   1877-1920   TNF receptor-like  
PTSG_06771T0   0.00000326   264-302   TNF receptor-like  
  0.00000942   223-260   TNF receptor-like  
PTSG_06772T0   0.0000000538   45-89   TNF receptor-like  
  0.000000353   88-133   TNF receptor-like  
  0.000000471   130-174   TNF receptor-like  
  0.0000276   3-47   TNF receptor-like  
PTSG_07046T0   0.000000241   1648-1694   TNF receptor-like  
  0.0000005   1544-1581   TNF receptor-like  
  0.00000913   1461-1500   TNF receptor-like  
  0.00000971   1504-1542   TNF receptor-like  
  0.0000673   622-664   TNF receptor-like  
  0.0000785   797-836   TNF receptor-like  
  0.00025   1614-1658   TNF receptor-like  
  0.000518   1006-1051   TNF receptor-like  
  0.00572   758-802   TNF receptor-like  
  0.0287   1586-1617   TNF receptor-like  
  0.0393   1100-1142   TNF receptor-like  
  0.0437   889-917   TNF receptor-like  
  0.05   1243-1287   TNF receptor-like  
  0.0636   1342-1381   TNF receptor-like  
  0.0976   258-280   TNF receptor-like  
PTSG_07512T0   0.00000174   314-360   TNF receptor-like  
  0.00224   237-277   TNF receptor-like  
  0.0864   92-160   TNF receptor-like  
PTSG_07734T0   0.000000151   178-228   TNF receptor-like  
  0.00000706   638-681   TNF receptor-like  
  0.00706   324-364   TNF receptor-like  
  0.0259   558-591   TNF receptor-like  
PTSG_07992T0   0.0000185   95-127   TNF receptor-like  
  0.0000982   281-336   TNF receptor-like  
  0.000489   233-267   TNF receptor-like  
  0.00459   160-189   TNF receptor-like  
  0.00903   210-235   TNF receptor-like  
PTSG_08525T0   0.00000184   441-486   TNF receptor-like  
  0.0471   490-531   TNF receptor-like  
PTSG_08578T0   0.0000118   177-222   TNF receptor-like  
  0.00419   80-120   TNF receptor-like  
  0.011   20-62   TNF receptor-like  
PTSG_08599T0   0.0000113   359-401   TNF receptor-like  
  0.0000518   457-501   TNF receptor-like  
  0.000247   228-272   TNF receptor-like  
PTSG_08926T0   0.0000278   434-478   TNF receptor-like  
PTSG_09719T0   0.00000447   269-320   TNF receptor-like  
PTSG_09788T0   0.00000541   459-510   TNF receptor-like  
  0.0032   512-542   TNF receptor-like  
PTSG_10030T0   0.0000706   80-111   TNF receptor-like  
PTSG_10412T0   0.00000353   365-410   TNF receptor-like  
  0.0000221   260-315   TNF receptor-like  
PTSG_10482T0   0.00000235   1624-1665   TNF receptor-like  
  0.000647   1479-1521   TNF receptor-like  
  0.000989   1668-1705   TNF receptor-like  
  0.00265   2254-2285   TNF receptor-like  
  0.0414   1588-1624   TNF receptor-like  
  0.0989   2112-2152   TNF receptor-like  
PTSG_10501T0   0.00000000824   6-50   TNF receptor-like  
  0.000000414   89-132   TNF receptor-like  
  0.00612   49-86   TNF receptor-like  
PTSG_10516T0   0.0000144   39-86   TNF receptor-like  
  0.0141   193-219   TNF receptor-like  
PTSG_10526T0   0.000000589   444-486   TNF receptor-like  
  0.00000538   1089-1127   TNF receptor-like  
  0.0000235   830-872   TNF receptor-like  
  0.0000432   1504-1542   TNF receptor-like  
  0.0000636   949-1000   TNF receptor-like  
  0.0000639   1665-1710   TNF receptor-like  
  0.000349   536-570   TNF receptor-like  
  0.000471   390-443   TNF receptor-like  
  0.00245   206-256   TNF receptor-like  
  0.0177   1541-1585   TNF receptor-like  
  0.0406   1770-1806   TNF receptor-like  
  0.041   492-528   TNF receptor-like  
PTSG_10646T0   0.0000146   305-351   TNF receptor-like  
  0.00636   201-256   TNF receptor-like  
  0.0221   458-484   TNF receptor-like  
PTSG_11044T0   0.0000942   664-718   TNF receptor-like  
PTSG_11120T0   0.000000863   433-475   TNF receptor-like  
  0.0000203   819-861   TNF receptor-like  
  0.0000243   1040-1078   TNF receptor-like  
  0.0000247   1164-1204   TNF receptor-like  
  0.000051   1697-1735   TNF receptor-like  
  0.0000875   1120-1164   TNF receptor-like  
  0.000184   1969-2030   TNF receptor-like  
  0.000196   1080-1120   TNF receptor-like  
  0.000471   523-560   TNF receptor-like  
  0.000807   379-432   TNF receptor-like  
  0.00706   2083-2121   TNF receptor-like  
  0.0123   1600-1641   TNF receptor-like  
  0.0149   1734-1778   TNF receptor-like  
  0.041   992-1040   TNF receptor-like  
  0.0432   955-984   TNF receptor-like  
  0.0706   481-517   TNF receptor-like  
PTSG_11179T0   0.0000000271   419-464   TNF receptor-like  
  0.000000118   463-507   TNF receptor-like  
  0.000000618   504-548   TNF receptor-like  
  0.00000383   377-421   TNF receptor-like  
  0.00000903   240-290   TNF receptor-like  
  0.0000128   295-341   TNF receptor-like  
  0.00111   333-374   TNF receptor-like  
 
Weak hits:
PTSG_00710T0   0.00483   1471-1509   TNF receptor-like  
PTSG_01572T0   0.0022   164-204   TNF receptor-like  
  0.0565   296-337   TNF receptor-like  
PTSG_01615T0   0.000432   295-325   TNF receptor-like  
  0.00104   397-442   TNF receptor-like  
  0.00647   269-296   TNF receptor-like  
  0.0824   331-358   TNF receptor-like  
  0.0918   465-511   TNF receptor-like  
PTSG_01807T0   0.00541   328-352   TNF receptor-like  
PTSG_01976T0   0.02   3462-3509   TNF receptor-like  
PTSG_02037T0   0.000471   3621-3667   TNF receptor-like  
  0.00259   2535-2584   TNF receptor-like  
  0.0753   82-128   TNF receptor-like  
PTSG_02138T0   0.00753   932-976   TNF receptor-like  
  0.0282   975-1012   TNF receptor-like  
PTSG_02559T0   0.000151   777-821   TNF receptor-like  
  0.00429   619-679   TNF receptor-like  
PTSG_03128T0   0.0148   600-637   TNF receptor-like  
PTSG_03507T0   0.00895   790-819   TNF receptor-like  
PTSG_04308T0   0.00122   353-392   TNF receptor-like  
PTSG_04590T0   0.0471   389-430   TNF receptor-like  
PTSG_04695T0   0.000118   571-613   TNF receptor-like  
  0.00612   664-703   TNF receptor-like  
  0.00706   147-181   TNF receptor-like  
PTSG_04976T0   0.000118   76-115   TNF receptor-like  
PTSG_05424T0   0.000157   991-1032   TNF receptor-like  
  0.000306   954-991   TNF receptor-like  
  0.00141   804-848   TNF receptor-like  
  0.00549   911-950   TNF receptor-like  
  0.00576   581-638   TNF receptor-like  
  0.0232   1041-1099   TNF receptor-like  
PTSG_05491T0   0.0753   330-385   TNF receptor-like  
PTSG_05572T0   0.0135   18-60   TNF receptor-like  
PTSG_06002T0   0.000113   56-84   TNF receptor-like  
  0.0029   2-53   TNF receptor-like  
PTSG_06114T0   0.0989   637-666   TNF receptor-like  
PTSG_06426T0   0.00361   392-432   TNF receptor-like  
PTSG_07437T0   0.0177   179-218   TNF receptor-like  
PTSG_07753T0   0.00848   425-485   TNF receptor-like  
PTSG_08331T0   0.000306   425-471   TNF receptor-like  
  0.00256   1038-1101   TNF receptor-like  
  0.0479   909-945   TNF receptor-like  
  0.0659   622-670   TNF receptor-like  
PTSG_08477T0   0.0146   94-145   TNF receptor-like  
PTSG_09098T0   0.00271   290-334   TNF receptor-like  
PTSG_09176T0   0.00442   236-274   TNF receptor-like  
  0.0377   195-222   TNF receptor-like  
  0.0841   11-51   TNF receptor-like  
PTSG_09682T0   0.00706   449-484   TNF receptor-like  
  0.0106   215-252   TNF receptor-like  
  0.0297   492-528   TNF receptor-like  
  0.0518   413-441   TNF receptor-like  
  0.0753   252-288   TNF receptor-like  
PTSG_09707T0   0.000389   418-465   TNF receptor-like  
PTSG_09771T0   0.000942   463-499   TNF receptor-like  
  0.00124   420-464   TNF receptor-like  
  0.00312   1002-1032   TNF receptor-like  
  0.00391   285-327   TNF receptor-like  
  0.00536   378-422   TNF receptor-like  
  0.033   982-1008   TNF receptor-like  
  0.0518   580-605   TNF receptor-like  
  0.0824   774-806   TNF receptor-like  
PTSG_10095T0   0.000636   1153-1191   TNF receptor-like  
  0.00337   705-738   TNF receptor-like  
  0.00761   1462-1498   TNF receptor-like  
  0.0118   1111-1155   TNF receptor-like  
  0.0137   990-1026   TNF receptor-like  
  0.0334   1355-1411   TNF receptor-like  
PTSG_10406T0   0.0365   520-556   TNF receptor-like  
PTSG_10414T0   0.00965   148-188   TNF receptor-like  
PTSG_10655T0   0.00341   296-340   TNF receptor-like  
PTSG_11048T0   0.0235   624-663   TNF receptor-like  
  0.0647   652-688   TNF receptor-like  
  0.0765   368-413   TNF receptor-like  
PTSG_11280T0   0.00377   538-580   TNF receptor-like  
  0.00447   437-486   TNF receptor-like  
PTSG_11285T0   0.00286   147-169   TNF receptor-like  
PTSG_11356T0   0.000149   552-597   TNF receptor-like  
  0.00416   855-891   TNF receptor-like  
PTSG_11387T0   0.0022   417-461   TNF receptor-like  
  0.00612   279-321   TNF receptor-like  
  0.00698   460-497   TNF receptor-like  
  0.00785   375-419   TNF receptor-like  
  0.0165   1004-1029   TNF receptor-like  
  0.0706   979-1005   TNF receptor-like  
PTSG_11472T0   0.0659   108-138   TNF receptor-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   36495 36495
No Yes Homo sapiens 76_38 Human 153 80
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 46 20
No Yes Gorilla gorilla 76_3.1 Western gorilla 66 31
No Yes Pongo abelii 76_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 38 20
No Yes Papio anubis 76 Olive baboon 53 24
No Yes Macaca mulatta 76_1 Rhesus monkey 74 35
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 93 48
No Yes Otolemur garnettii 76_3 Small-eared galago 40 19
No Yes Microcebus murinus 76_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 76_5.0 Norway rat 47 26
No Yes Mus musculus 76_38 House mouse 88 53
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 42 20
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 37 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 49 24
No Yes Oryctolagus cuniculus 76_2 Rabbit 37 20
No Yes Ochotona princeps 76 American pika 29 15
No Yes Tupaia belangeri 76 Northern tree shrew 26 15
No Yes Sus scrofa 76_10.2 Pig 78 40
No Yes Bos taurus 76_3.1 Cattle 53 24
No Yes Ovis aries 76_3.1 Sheep 42 23
No Yes Vicugna pacos 76_1 Alpaca 10 7
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 76_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 76_1 Giant panda 42 20
No Yes Canis familiaris 76_3.1 Dog 54 27
No Yes Felis catus 76_6.2 Domestic cat 42 22
No Yes Equus caballus 76_2 Horse 49 23
No Yes Myotis lucifugus 76_2.0 Little brown bat 51 23
No Yes Pteropus vampyrus 76_1 Large flying fox 35 20
No Yes Sorex araneus 76_1 European shrew 8 6
No Yes Erinaceus europaeus 76 Western European hedgehog 13 9
No Yes Procavia capensis 76_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 76_3 African savanna elephant 57 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 44 21
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 52 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 44 22
No Yes Ornithorhynchus anatinus 76_5 Platypus 35 18
No Yes Saccoglossus kowalevskii v3.0   30 21
No Yes Petromyzon marinus 76_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 76_2 Turkey 37 19
No Yes Gallus gallus 76_4 Chicken 32 18
No Yes Anas platyrhynchos 76_1.0 Mallard 38 18
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 32 18
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 42 22
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 34 19
No Yes Anolis carolinensis 76_2.0 Green anole 28 15
No Yes Xenopus laevis African clawed frog 57 26
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 31 15
No Yes Latimeria chalumnae 76_1 Coelacanth 45 24
No Yes Lepisosteus oculatus 76 Spotted gar 53 30
No Yes Gadus morhua 76_1 Atlantic cod 84 40
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 16
No Yes Takifugu rubripes 76_4 Torafugu 87 38
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 47 26
No Yes Oryzias latipes 76_1 Japanese medaka 46 24
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 49 27
No Yes Poecilia formosa 76 Amazon molly 52 26
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 76 34
No Yes Astyanax mexicanus 76 Mexican tetra 49 24
No Yes Danio rerio 76_9 Zebrafish 94 44
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 8 6
No Yes Adineta vaga   1 1
No Yes Octopus bimaculoides 280   3 2
No Yes Crassostrea gigas 22 Pacific oyster 9 7
No Yes Lottia gigantea Owl limpet 30 17
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   6 4
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   2 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Daphnia pulex Common water flea 2 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Pristionchus pacificus   1 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   3 2
No Yes Echinococcus multilocularis   3 2
No Yes Echinococcus granulosus   3 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   2 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   8 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 8
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   76 37
No Yes Monosiga brevicollis   21 13
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanophora paradoxa   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Tetrahymena thermophila SB210 1   5 5
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Sorangium cellulosum 'So ce 56'   3 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 47 22
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 136 74
No Yes Homo sapiens (NCBI version) Human 69 33
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 45 23
No Yes Homo sapiens 69_37 Human 52 24
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 45 19
No Yes Gorilla gorilla 69_3.1 Western gorilla 47 22
No Yes Pongo abelii 69_2 Sumatran orangutan 45 22
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 38 20
No Yes Macaca mulatta 69_1 Rhesus monkey 47 22
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 44 22
No Yes Otolemur garnettii 69_3 Small-eared galago 38 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 30 17
No Yes Rattus norvegicus 69_3.4 Norway rat 46 25
No Yes Mus musculus 69_38 House mouse 45 23
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 24 14
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 36 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 46 23
No Yes Oryctolagus cuniculus 69_2 Rabbit 34 19
No Yes Ochotona princeps 69 American pika 29 15
No Yes Tupaia belangeri 69 Northern tree shrew 26 15
No Yes Sus scrofa 69_10.2 Pig 51 24
No Yes Bos taurus 69_3.1 Cattle 48 22
No Yes Vicugna pacos 69_1 Alpaca 10 7
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 36 20
No Yes Mustela putorius furo 69_1.0 Domestic ferret 41 19
No Yes Ailuropoda melanoleuca 69_1 Giant panda 39 18
No Yes Canis familiaris 69_3.1 Dog 39 19
No Yes Felis catus 69 Domestic cat 31 17
No Yes Equus caballus 69_2 Horse 42 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 49 22
No Yes Pteropus vampyrus 69_1 Large flying fox 35 20
No Yes Sorex araneus 69_1 European shrew 8 6
No Yes Erinaceus europaeus 69 Western European hedgehog 13 9
No Yes Procavia capensis 69_1 Cape rock hyrax 28 15
No Yes Loxodonta africana 69_3 African savanna elephant 41 21
No Yes Echinops telfairi 69 Small Madagascar hedgehog 19 12
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 7
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 8 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 21 11
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 42 22
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 33 18
No Yes Ornithorhynchus anatinus 69_5 Platypus 31 16
No Yes Petromyzon marinus 69_7.0 Sea lamprey 11 6
No Yes Meleagris gallopavo 69_2 Turkey 26 14
No Yes Gallus gallus 69_2 Chicken 31 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 29 16
No Yes Anolis carolinensis 69_2.0 Green anole 22 11
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 25 12
No Yes Latimeria chalumnae 69_1 Coelacanth 37 20
No Yes Gadus morhua 69_1 Atlantic cod 34 17
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 31 15
No Yes Takifugu rubripes 69_4 Torafugu 32 15
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 38 20
No Yes Oryzias latipes 69_1 Japanese medaka 41 21
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 49 27
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 54 25
No Yes Danio rerio 69_9 Zebrafish 71 33
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16104 8391
No Yes Protozoadb 2010_08 (Protozoadb)   6 6
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 1
No Yes STRING v9.0.5 (STRING)   1030 526
No Yes Uniprot 2018_03 genome   9605 5117
No Yes Global Ocean Sampling Expedition (GOS)   42 21
No Yes NCBI viral sequences (Viral)   85 54
No Yes PDB chains (SCOP 1.75) (PDB)   36 16
No Yes Protein Data Bank (all PDB sequenc)   411 229
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   739 703
No Yes TargetDB (Targets)   27 14
No Yes UniProt viral sequences (Viral)   451 308

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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