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  Home > Genomes > Pythium ultimum v1.7-2 > Ypt/Rab-GAP domain of gyp1p domains


Ypt/Rab-GAP domain of gyp1p superfamily domain assignments
in
Pythium ultimum v1.7-2

Assignment details

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Pythium ultimum v1.7-2 has 53 significant domains in 31 proteins.

     

Sequence ID   Evalue   Region   Family  
PYU1_T000976   8.89e-24   217-343,441-457   Ypt/Rab-GAP domain of gyp1p  
  1.49e-23   510-620   Ypt/Rab-GAP domain of gyp1p  
PYU1_T001316   3.01e-37   41-164   Ypt/Rab-GAP domain of gyp1p  
PYU1_T001317   3.66e-50   164-371   Ypt/Rab-GAP domain of gyp1p  
  6.8e-36   347-470   Ypt/Rab-GAP domain of gyp1p  
PYU1_T001732   2.28e-30   161-216,283-405   Ypt/Rab-GAP domain of gyp1p  
  1.94e-27   387-488   Ypt/Rab-GAP domain of gyp1p  
PYU1_T002315   7.06e-36   43-241   Ypt/Rab-GAP domain of gyp1p  
  3.92e-32   218-336   Ypt/Rab-GAP domain of gyp1p  
PYU1_T002376   2.56e-18   211-328   Ypt/Rab-GAP domain of gyp1p  
  0.0000000000000207   72-233   Ypt/Rab-GAP domain of gyp1p  
PYU1_T002445   0.000000199   88-135,166-231   Ypt/Rab-GAP domain of gyp1p  
PYU1_T004046   4.18e-22   346-476   Ypt/Rab-GAP domain of gyp1p  
  1.86e-17   144-218,248-264   Ypt/Rab-GAP domain of gyp1p  
PYU1_T004055   1.07e-29   25-119,186-273   Ypt/Rab-GAP domain of gyp1p  
  9.94e-19   252-349   Ypt/Rab-GAP domain of gyp1p  
PYU1_T004488   7.59e-32   242-390   Ypt/Rab-GAP domain of gyp1p  
  1.75e-23   366-482   Ypt/Rab-GAP domain of gyp1p  
PYU1_T004840   2.3e-40   233-404   Ypt/Rab-GAP domain of gyp1p  
  1.44e-27   380-476   Ypt/Rab-GAP domain of gyp1p  
PYU1_T005590   3.27e-20   35-150   Ypt/Rab-GAP domain of gyp1p  
PYU1_T005677   6.8e-41   105-274   Ypt/Rab-GAP domain of gyp1p  
  3.92e-27   250-332   Ypt/Rab-GAP domain of gyp1p  
PYU1_T005843   1.83e-25   28-188   Ypt/Rab-GAP domain of gyp1p  
  3.66e-17   167-249   Ypt/Rab-GAP domain of gyp1p  
PYU1_T005868   7.85e-25   174-326   Ypt/Rab-GAP domain of gyp1p  
  5.23e-20   306-409   Ypt/Rab-GAP domain of gyp1p  
PYU1_T005964   0.000000225   487-550   Ypt/Rab-GAP domain of gyp1p  
PYU1_T006071   9.68e-32   9-129   Ypt/Rab-GAP domain of gyp1p  
PYU1_T007000   6.28e-36   354-518   Ypt/Rab-GAP domain of gyp1p  
  6.54e-20   499-612   Ypt/Rab-GAP domain of gyp1p  
PYU1_T007125   0.0000000204   27-87,145-207   Ypt/Rab-GAP domain of gyp1p  
PYU1_T007218   1.73e-21   56-199   Ypt/Rab-GAP domain of gyp1p  
  1.33e-17   181-289   Ypt/Rab-GAP domain of gyp1p  
PYU1_T007436   1.67e-38   985-1174   Ypt/Rab-GAP domain of gyp1p  
  3.92e-18   1158-1249   Ypt/Rab-GAP domain of gyp1p  
PYU1_T008926   5.75e-45   283-441   Ypt/Rab-GAP domain of gyp1p  
  4.45e-20   419-508   Ypt/Rab-GAP domain of gyp1p  
PYU1_T010515   2.09e-22   521-555,583-673   Ypt/Rab-GAP domain of gyp1p  
PYU1_T010516   0.000000194   3-69   Ypt/Rab-GAP domain of gyp1p  
PYU1_T010743   0.000000000115   658-757   Ypt/Rab-GAP domain of gyp1p  
  0.0000000366   484-637   Ypt/Rab-GAP domain of gyp1p  
PYU1_T011126   1.73e-24   260-378,424-472   Ypt/Rab-GAP domain of gyp1p  
  4.97e-20   448-564   Ypt/Rab-GAP domain of gyp1p  
PYU1_T012089   4.18e-18   74-153,180-268   Ypt/Rab-GAP domain of gyp1p  
  3.14e-16   244-347   Ypt/Rab-GAP domain of gyp1p  
PYU1_T012557   6.8e-21   7-170   Ypt/Rab-GAP domain of gyp1p  
  0.0902   187-222   Ypt/Rab-GAP domain of gyp1p  
PYU1_T013382   7.59e-36   756-966   Ypt/Rab-GAP domain of gyp1p  
  8.89e-18   941-1060   Ypt/Rab-GAP domain of gyp1p  
PYU1_T014189   1.05e-32   2-148   Ypt/Rab-GAP domain of gyp1p  
  3.92e-20   124-234   Ypt/Rab-GAP domain of gyp1p  
PYU1_T014190   1.73e-18   33-207   Ypt/Rab-GAP domain of gyp1p  
  0.00000000000000366   187-288   Ypt/Rab-GAP domain of gyp1p  
 
Weak hits:
PYU1_T002612   0.000759   298-357   Ypt/Rab-GAP domain of gyp1p  
PYU1_T002613   0.000759   298-357   Ypt/Rab-GAP domain of gyp1p  
PYU1_T003331   0.00706   3-57   Ypt/Rab-GAP domain of gyp1p  
PYU1_T012568   0.0654   169-265   Ypt/Rab-GAP domain of gyp1p  

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Select to display   Genome       Domains   Proteins
No Yes ALL   177459 177459
No Yes Homo sapiens 76_38 Human 322 214
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 87 48
No Yes Gorilla gorilla 76_3.1 Western gorilla 135 80
No Yes Pongo abelii 76_2 Sumatran orangutan 114 64
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 85 44
No Yes Papio anubis 76 Olive baboon 96 52
No Yes Macaca mulatta 76_1 Rhesus monkey 166 102
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 199 111
No Yes Otolemur garnettii 76_3 Small-eared galago 77 40
No Yes Microcebus murinus 76_1 Gray mouse lemur 58 32
No Yes Rattus norvegicus 76_5.0 Norway rat 89 48
No Yes Mus musculus 76_38 House mouse 165 88
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 63 37
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 77 43
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 73 39
No Yes Cavia porcellus 76_3 Domestic guinea pig 78 41
No Yes Oryctolagus cuniculus 76_2 Rabbit 104 56
No Yes Ochotona princeps 76 American pika 74 44
No Yes Tupaia belangeri 76 Northern tree shrew 61 35
No Yes Sus scrofa 76_10.2 Pig 101 59
No Yes Bos taurus 76_3.1 Cattle 82 44
No Yes Ovis aries 76_3.1 Sheep 91 47
No Yes Vicugna pacos 76_1 Alpaca 47 28
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 76 39
No Yes Mustela putorius furo 76_1.0 Domestic ferret 83 43
No Yes Ailuropoda melanoleuca 76_1 Giant panda 92 50
No Yes Canis familiaris 76_3.1 Dog 131 67
No Yes Felis catus 76_6.2 Domestic cat 81 43
No Yes Equus caballus 76_2 Horse 98 52
No Yes Myotis lucifugus 76_2.0 Little brown bat 72 38
No Yes Pteropus vampyrus 76_1 Large flying fox 74 39
No Yes Sorex araneus 76_1 European shrew 45 27
No Yes Erinaceus europaeus 76 Western European hedgehog 55 33
No Yes Procavia capensis 76_1 Cape rock hyrax 68 39
No Yes Loxodonta africana 76_3 African savanna elephant 114 62
No Yes Echinops telfairi 76 Small Madagascar hedgehog 68 41
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 109 58
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 40 22
No Yes Macropus eugenii 76_1.0 Tammar wallaby 64 37
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 89 50
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 87 45
No Yes Ornithorhynchus anatinus 76_5 Platypus 65 38
No Yes Saccoglossus kowalevskii v3.0   78 45
No Yes Petromyzon marinus 76_7.0 Sea lamprey 51 31
No Yes Meleagris gallopavo 76_2 Turkey 79 43
No Yes Gallus gallus 76_4 Chicken 79 41
No Yes Anas platyrhynchos 76_1.0 Mallard 71 38
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 71 37
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 70 39
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 101 52
No Yes Anolis carolinensis 76_2.0 Green anole 80 43
No Yes Xenopus laevis African clawed frog 96 52
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 100 52
No Yes Latimeria chalumnae 76_1 Coelacanth 86 48
No Yes Lepisosteus oculatus 76 Spotted gar 105 55
No Yes Gadus morhua 76_1 Atlantic cod 86 47
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 110 61
No Yes Takifugu rubripes 76_4 Torafugu 239 131
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 116 64
No Yes Oryzias latipes 76_1 Japanese medaka 101 56
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 85 47
No Yes Poecilia formosa 76 Amazon molly 87 46
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 108 58
No Yes Astyanax mexicanus 76 Mexican tetra 92 49
No Yes Danio rerio 76_9 Zebrafish 145 79
No Yes Oikopleura dioica   39 22
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 65 40
No Yes Ciona intestinalis 76 Vase tunicate 45 28
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 68 45
No Yes Adineta vaga   153 85
No Yes Octopus bimaculoides 280   130 69
No Yes Crassostrea gigas 22 Pacific oyster 52 31
No Yes Lottia gigantea Owl limpet 52 29
No Yes Helobdella robusta   55 30
No Yes Capitella sp. I   64 37
No Yes Danaus plexippus OGS1.0 Monarch butterfly 46 25
No Yes Heliconius melpomene Postman butterfly 38 21
No Yes Bombyx mori Domestic silkworm 37 25
No Yes Nasonia vitripennis Jewel wasp 35 20
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 49 28
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 38 22
No Yes Linepithema humile v1.1 Argentine ant 38 21
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 37 21
No Yes Solenopsis invicta v.2.2.3 Red fire ant 34 19
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 37 21
No Yes Atta cephalotes v1.1   38 21
No Yes Camponotus floridanus v3.3 Florida carpenter ant 38 21
No Yes Lucilia cuprina Australian sheep blowfly 38 21
No Yes Drosophila grimshawi 1.3   44 25
No Yes Drosophila willistoni 1.3   44 25
No Yes Drosophila pseudoobscura 2.13   60 35
No Yes Drosophila persimilis 1.3   64 44
No Yes Drosophila suzukii   44 24
No Yes Drosophila yakuba 1.3   45 26
No Yes Drosophila simulans 1.3   40 23
No Yes Drosophila sechellia 1.3   45 26
No Yes Drosophila melanogaster 76_5 Fruit fly 90 53
No Yes Drosophila erecta 1.3   45 25
No Yes Drosophila ananassae 1.3   41 23
No Yes Drosophila virilis 1.2   44 25
No Yes Drosophila mojavensis 1.3   43 24
No Yes Megaselia scalaris 22   24 16
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 46 25
No Yes Culex pipiens quinquefasciatus Southern house mosquito 46 27
No Yes Anopheles darlingi 22 American malaria mosquito 35 21
No Yes Anopheles gambiae 49_3j African malaria mosquito 42 23
No Yes Tribolium castaneum 3.0 Red flour beetle 43 23
No Yes Pediculus humanus corporis (Early assembly) Human body louse 44 23
No Yes Acyrthosiphon pisum Pea aphid 39 22
No Yes Rhodnius prolixus 22   29 19
No Yes Daphnia pulex Common water flea 46 26
No Yes Strigamia maritima 22   53 29
No Yes Sarcoptes scabiei   31 20
No Yes Tetranychus urticae Two-spotted spider mite 45 26
No Yes Ixodes scapularis (Preliminary) Black-legged tick 36 21
No Yes Pristionchus pacificus   32 20
No Yes Meloidogyne incognita Southern root-knot nematode 31 19
No Yes Meloidogyne hapla   13 9
No Yes Onchocerca volvulus 22   34 18
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 50 28
No Yes Caenorhabditis japonica   38 20
No Yes Caenorhabditis brenneri   41 21
No Yes Caenorhabditis remanei   42 22
No Yes Caenorhabditis elegans 76_235 Roundworm 80 41
No Yes Caenorhabditis briggsae 2   38 20
No Yes Trichinella spiralis 22   36 23
No Yes Hymenolepis microstoma   34 18
No Yes Echinococcus multilocularis   38 22
No Yes Echinococcus granulosus   34 20
No Yes Taenia solium Pork tapeworm 38 20
No Yes Schistosoma mansoni   46 27
No Yes Mnemiopsis leidyi Sea walnut 43 24
No Yes Thelohanellus kitauei   7 6
No Yes Acropora digitifera v1.0   42 29
No Yes Nematostella vectensis 1.0 Starlet sea anemone 61 38
No Yes Hydra vulgaris   47 29
No Yes Amphimedon queenslandica   54 32
No Yes Trichoplax adhaerens   52 26
No Yes Proterospongia sp. ATCC 50818   44 26
No Yes Monosiga brevicollis   36 21
No Yes Sphaeroforma arctica JP610   32 24
No Yes Capsaspora owczarzaki ATCC 30864   39 20
No Yes Conidiobolus coronatus NRRL28638 v1.0   29 14
No Yes Mortierella verticillata NRRL 6337   41 20
No Yes Phycomyces blakesleeanus   62 32
No Yes Rhizopus oryzae RA 99-880   57 32
No Yes Mucor circinelloides   58 30
No Yes Rhizomucor miehei CAU432   51 28
No Yes Malassezia globosa CBS 7966   42 24
No Yes Sporisorium reilianum 22   26 13
No Yes Ustilago maydis   27 13
No Yes Mixia osmundae IAM 14324 v1.0   26 13
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   24 12
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   18 10
No Yes Melampsora laricis-populina   25 13
No Yes Rhodotorula graminis WP1 v1.0   23 12
No Yes Sporobolomyces roseus IAM 13481   16 8
No Yes Microbotryum violaceum 22   27 13
No Yes Wallemia sebi v1.0   14 7
No Yes Sphaerobolus stellatus v1.0   26 13
No Yes Piloderma croceum F 1598 v1.0   23 12
No Yes Serpula lacrymans var. lacrymans S7.9   22 12
No Yes Coniophora puteana   24 12
No Yes Hydnomerulius pinastri v2.0   24 12
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   24 12
No Yes Pisolithus microcarpus 441 v1.0   30 15
No Yes Pisolithus tinctorius Marx 270 v1.0   28 14
No Yes Scleroderma citrinum Foug A v1.0   24 12
No Yes Coprinopsis cinerea okayama7 130 v3   22 11
No Yes Pleurotus ostreatus Oyster mushroom 20 11
No Yes Amanita thiersii Skay4041 v1.0   24 12
No Yes Amanita muscaria Koide v1.0 Fly agaric 36 24
No Yes Galerina marginata v1.0   24 12
No Yes Hebeloma cylindrosporum h7 v2.0   22 12
No Yes Laccaria bicolor S238N-H82   22 12
No Yes Agaricus bisporus var. bisporus   23 12
No Yes Schizophyllum commune   21 11
No Yes Stereum hirsutum FP-91666 SS1 v1.0   23 12
No Yes Heterobasidion annosum   19 10
No Yes Gloeophyllum trabeumv1.0   22 11
No Yes Punctularia strigosozonata v1.0   24 12
No Yes Sebacina vermifera MAFF 305830 v1.0   23 13
No Yes Fomitiporia mediterranea v1.0   24 12
No Yes Tulasnella calospora AL13/4D v1.0   23 12
No Yes Postia placenta   31 17
No Yes Wolfiporia cocos MD-104 SS10 v1.0   20 10
No Yes Fomitopsis pinicolav1.0   23 12
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   23 12
No Yes Phanerochaete chrysosporium RP-78 2.1   18 10
No Yes Dichomitus squalens   24 12
No Yes Trametes versicolor v1.0   25 13
No Yes Tremella mesenterica Witches' butter 24 12
No Yes Daldinia eschscholzii EC12 v1.0   24 12
No Yes Apiospora montagnei NRRL 25634 v1.0   24 12
No Yes Magnaporthe poae ATCC 64411 22   21 11
No Yes Magnaporthe grisea 70-15   23 12
No Yes Podospora anserina   24 12
No Yes Sporotrichum thermophile ATCC 42464   24 13
No Yes Thielavia terrestris NRRL 8126   25 12
No Yes Chaetomium globosum CBS 148.51   23 12
No Yes Neurospora tetrasperma   25 12
No Yes Neurospora discreta FGSC 8579   25 12
No Yes Neurospora crassa OR74A   25 12
No Yes Cryphonectria parasitica Chestnut blight fungus 25 12
No Yes Verticillium albo-atrum VaMs.102   20 11
No Yes Verticillium dahliae VdLs.17   23 12
No Yes Acremonium alcalophilumv 1.0   24 12
No Yes Glomerella graminicola 22   24 12
No Yes Fusarium graminearum   23 12
No Yes Nectria haematococca mpVI   25 12
No Yes Fusarium oxysporum f. sp. lycopersici 4286   22 11
No Yes Fusarium verticillioides 7600   23 12
No Yes Trichoderma asperellum CBS 433.97 v1.0   25 12
No Yes Trichoderma atroviride   25 12
No Yes Trichoderma citrinoviride v1.0   24 12
No Yes Trichoderma reesei 1.2   25 12
No Yes Trichoderma virens Gv29-8   25 12
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   23 12
No Yes Trichoderma harzianum CBS 226.95 v1.0   25 12
No Yes Amorphotheca resinae v1.0 Creosote fungus 25 12
No Yes Botrytis cinerea B05.10   18 10
No Yes Sclerotinia sclerotiorum   23 12
No Yes Blumeria graminis 22   25 12
No Yes Didymella exigua CBS 183.55 v1.0   24 12
No Yes Leptosphaeria maculans 22   23 12
No Yes Setosphaeria turcica v1.0   24 12
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   24 12
No Yes Cochliobolus victoriae FI3 v1.0   24 12
No Yes Cochliobolus carbonum 26-R-13 v1.0   24 12
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 22 11
No Yes Alternaria brassicicola   24 12
No Yes Cochliobolus lunatus m118 v2.0   22 11
No Yes Pyrenophora teres f. teres 22   24 12
No Yes Pyrenophora tritici-repentis   23 12
No Yes Stagonospora nodorum   22 11
No Yes Mycosphaerella graminicola IPO323   25 12
No Yes Zasmidium cellare ATCC 36951 v1.0   24 12
No Yes Dothistroma septosporum   24 12
No Yes Septoria musiva v1.0   24 12
No Yes Mycosphaerella fijiensis CIRAD86   22 11
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   25 12
No Yes Paracoccidioides brasiliensis Pb18   23 12
No Yes Coccidioides posadasii RMSCC 3488   23 12
No Yes Coccidioides immitis RS   23 12
No Yes Ajellomyces dermatitidis SLH14081   24 12
No Yes Histoplasma capsulatum class NAmI strain WU24   21 12
No Yes Microsporum canis CBS 113480   23 12
No Yes Trichophyton equinum CBS 127.97   23 12
No Yes Trichophyton verrucosum HKI 0517   23 13
No Yes Arthroderma benhamiae CBS 112371   21 12
No Yes Trichophyton tonsurans CBS 112818   23 12
No Yes Trichophyton rubrum CBS 118892   23 12
No Yes Uncinocarpus reesii 1704   23 12
No Yes Aspergillus zonatus v1.0   24 12
No Yes Penicillium chrysogenum Wisconsin 54-1255   22 11
No Yes Penicillium chrysogenum v1.0   24 12
No Yes Aspergillus acidus v1.0   24 12
No Yes Aspergillus fumigatus Af293   24 12
No Yes Aspergillus brasiliensis v1.0   24 12
No Yes Aspergillus nidulans FGSC A4   24 12
No Yes Aspergillus sydowii v1.0   24 12
No Yes Aspergillus versicolor v1.0   24 12
No Yes Aspergillus glaucus   22 11
No Yes Aspergillus carbonarius ITEM 5010   25 12
No Yes Neosartorya fischeri NRRL 181   24 12
No Yes Aspergillus terreus NIH2624   24 12
No Yes Aspergillus tubingensis v1.0   24 12
No Yes Aspergillus wentii v1.0   24 12
No Yes Aspergillus oryzae RIB40   24 12
No Yes Aspergillus niger 22   24 12
No Yes Aspergillus niger ATCC 1015   22 11
No Yes Aspergillus flavus NRRL3357   24 12
No Yes Aspergillus clavatus NRRL 1   24 12
No Yes Penicillium marneffei ATCC 18224   26 13
No Yes Tuber melanosporum Mel28 22   25 13
No Yes Tuber melanosporum Vittad Perigord truffle 25 13
No Yes Hansenula polymorpha v2.0   19 10
No Yes Dekkera bruxellensis CBS 2499 v2.0   17 10
No Yes Pichia membranifaciensv1.0   18 10
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   22 12
No Yes Candida dubliniensis CD36   21 12
No Yes Candida tropicalis MYA-3404   21 12
No Yes Candida parapsilosis   20 11
No Yes Candida albicans SC5314   21 12
No Yes Lodderomyces elongisporus NRRL YB-4239   18 10
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   17 9
No Yes Pichia stipitis CBS 6054   23 12
No Yes Candida guilliermondii ATCC 6260   21 12
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   22 12
No Yes Debaromyces hansenii   23 13
No Yes Wickerhamomyces anomalus   20 11
No Yes Pichia pastoris GS115   19 10
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   10 5
No Yes Yarrowia lipolytica CLIB122   22 12
No Yes Candida lusitaniae ATCC 42720   22 12
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   20 11
No Yes Vanderwaltozyma polyspora DSM 70294   18 9
No Yes Candida glabrata CBS138   16 10
No Yes Kluyveromyces thermotolerans CBS 6340   16 9
No Yes Lachancea kluyveri   16 9
No Yes Kluyveromyces waltii   16 9
No Yes Ashbya gossypii ATCC 10895   15 8
No Yes Zygosaccharomyces rouxii   18 9
No Yes Saccharomyces mikatae MIT   20 11
No Yes Saccharomyces paradoxus MIT   20 11
No Yes Saccharomyces cerevisiae 76 Baker's yeast 20 11
No Yes Saccharomyces bayanus MIT   20 11
No Yes Kluyveromyces lactis   16 9
No Yes Schizosaccharomyces cryophilus OY26 22   25 13
No Yes Schizosaccharomyces octosporus yFS286   25 13
No Yes Schizosaccharomyces japonicus yFS275   26 13
No Yes Schizosaccharomyces pombe Fission yeast 25 13
No Yes Catenaria anguillulae PL171 v1.0   28 15
No Yes Allomyces macrogynus ATCC 38327   68 34
No Yes Spizellomyces punctatus DAOM BR117   28 17
No Yes Dictyostelium discoideum   59 30
No Yes Dictyostelium purpureum   55 30
No Yes Entamoeba dispar 1.2   81 47
No Yes Entamoeba invadens 1.2   99 55
No Yes Entamoeba histolytica 1   84 47
No Yes Selaginella moellendorffii   44 22
No Yes Pinus taeda Loblolly pine 66 39
No Yes Picea abies Norway spruce 23 14
No Yes Eucalyptus grandis v201 Rose gum 45 23
No Yes Theobroma cacao B97-61/B2 v1 Cacao 28 14
No Yes Gossypium raimondii v221   178 97
No Yes Citrus clementina v165   55 28
No Yes Citrus sinensis v154 Sweet orange 85 52
No Yes Thellungiella halophila v173   57 28
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 65 36
No Yes Capsella rubella v183   48 24
No Yes Arabidopsis lyrata Lyrate rockcress 48 24
No Yes Arabidopsis thaliana 10 Thale cress 79 40
No Yes Carica papaya Papaya 29 15
No Yes Medicago truncatula Barrel medic 51 29
No Yes Phaseolus vulgaris v186 French bean 47 26
No Yes Glycine max v109 Soybean 76 39
No Yes Cucumis sativus v122 Cucumber 45 25
No Yes Fragaria vesca Wild strawberry 28 14
No Yes Malus domestica v196 Apple 55 32
No Yes Prunus persica v139 Peach 32 16
No Yes Linum usitatissimum v200 Flax 60 32
No Yes Manihot esculenta v147 Cassava 50 26
No Yes Populus trichocarpa v156 Black cottonwood 62 34
No Yes Vitis vinifera Wine grape 31 18
No Yes Mimulus guttatus v140 Spotted monkey flower 41 21
No Yes Solanum lycopersicum v.2.3 Tomato 43 23
No Yes Solanum tuberosum Potato 62 37
No Yes Actinidia chinensis Hongyang   52 31
No Yes Aquilegia coerulea v195   73 41
No Yes Triticum urartu 22   38 20
No Yes Triticum aestivum 22 Bread wheat 111 62
No Yes Aegilops tauschii 22   31 16
No Yes Brachypodium distachyon Stiff brome 50 26
No Yes Oryza barthii 22 African wild rice 50 25
No Yes Oryza meridionalis 22   55 29
No Yes Oryza glumaepatula 22   51 26
No Yes Oryza glaberrima African rice 30 15
No Yes Oryza punctata 22   66 36
No Yes Oryza nivara 22   50 25
No Yes Oryza brachyantha 22 Malo sina 35 18
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 61 34
No Yes Oryza sativa v193 Rice 61 34
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 53 29
No Yes Panicum virgatum v202 Switchgrass 94 54
No Yes Setaria italica v164 Foxtail millet 48 26
No Yes Zea mays subsp. mays Maize 82 48
No Yes Zea mays v181 Maize 84 49
No Yes Sorghum bicolor Sorghum 39 21
No Yes Musa balbisiana Balbis banana 52 30
No Yes Musa acuminata 22 Wild Malaysian banana 55 32
No Yes Amborella trichopoda 22   23 12
No Yes Physcomitrella patens   33 17
No Yes Coccomyxa subellipsoidea sp. C-169 v2   18 9
No Yes Asterochloris sp. Cgr/DA1pho v1.0   19 11
No Yes Chlorella variabilis sp. NC64A   14 9
No Yes Chlorella vulgaris   20 11
No Yes Volvox carteri f. nagariensis   26 14
No Yes Volvox carteri v199   22 12
No Yes Chlamydomonas reinhardtii 4.0   24 14
No Yes Ostreococcus sp. RCC809   16 9
No Yes Ostreococcus lucimarinus CCE9901   15 8
No Yes Ostreococcus tauri   11 6
No Yes Bathycoccus prasinos   14 8
No Yes Micromonas sp. RCC299   17 9
No Yes Micromonas pusilla CCMP1545 v3.0   15 9
No Yes Cyanidioschyzon merolae strain 10D 22   13 7
No Yes Cyanidioschyzon merolae   13 7
No Yes Porphyridium purpureum 02_2012   23 12
No Yes Thecamonas trahens ATCC 50062   47 27
No Yes Bigelowiella natans CCMP2755 22   69 44
No Yes Giardia lamblia 2.3   6 4
No Yes Cyanophora paradoxa   23 15
No Yes Leishmania mexicana 2.4   28 16
No Yes Leishmania major strain Friedlin   28 16
No Yes Leishmania infantum JPCM5 2.4   28 16
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   26 15
No Yes Trypanosoma vivax   23 13
No Yes Trypanosoma cruzi strain CL Brener   30 17
No Yes Trypanosoma congolense 2.4   29 17
No Yes Trypanosoma brucei gambiense v4.1   25 14
No Yes Trypanosoma brucei TREU927 v4.1   25 14
No Yes Ectocarpus siliculosus   37 21
No Yes Aureococcus anophagefferens   12 7
No Yes Albugo laibachii 22   45 24
No Yes Pythium iwayamai DAOM BR242034 22   55 29
No Yes Pythium arrhenomanes ATCC 12531 22   49 27
No Yes Pythium ultimum v1.7-2   53 31
No Yes Pythium aphanidermatum DAOM BR444 22   45 27
No Yes Pythium irregulare DAOM BR486 22   52 28
No Yes Pythium vexans DAOM BR484 22   54 28
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 39 22
No Yes Phytophthora sojae 1.1   45 26
No Yes Phytophthora infestans T30-4   48 28
No Yes Phytophthora capsici   34 20
No Yes Hyaloperonospora arabidopsidis 22   30 15
No Yes Phaeodactylum tricornutumCCAP 1055/1   16 10
No Yes Fragilariopsis cylindrus   16 8
No Yes Thalassiosira pseudonana CCMP1335   15 8
No Yes Perkinsus marinus ATCC 50983   40 22
No Yes Paramecium tetraurelia   194 108
No Yes Tetrahymena thermophila SB210 1   83 51
No Yes Ichthyophthirius multifiliis strain G5   30 21
No Yes Cryptosporidium hominis   21 11
No Yes Cryptosporidium muris   21 11
No Yes Cryptosporidium parvum Iowa II   21 11
No Yes Neospora caninum   32 17
No Yes Toxoplasma gondii VEG   31 17
No Yes Toxoplasma gondii ME49   31 17
No Yes Toxoplasma gondii GT1   30 16
No Yes Babesia bovis T2Bo   32 18
No Yes Theileria parva   11 8
No Yes Theileria annulata   14 8
No Yes Plasmodium falciparum 3D7   21 13
No Yes Plasmodium vivax SaI-1 7.0   23 13
No Yes Plasmodium knowlesi strain H   23 13
No Yes Plasmodium yoelii ssp. yoelii 1   20 13
No Yes Plasmodium chabaudi   23 13
No Yes Plasmodium berghei ANKA   23 13
No Yes Symbiodinium minutum clade B1 v1.2   88 57
No Yes Naegleria gruberi   26 14
No Yes Trichomonas vaginalis   117 66
No Yes Guillardia theta CCMP2712 v1.0   47 26
No Yes Emiliania huxleyi CCMP1516   37 23
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 137 74
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 75 44
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 51 28
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 23
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 56 29
No Yes Cryptococcus neoformans var. grubii H99   25 13
No Yes Cryptococcus neoformans B-3501A   27 13
No Yes Cryptococcus neoformans JEC21   22 11
No Yes Paracoccidioides brasiliensis Pb01   23 12
No Yes Paracoccidioides brasiliensis Pb03   24 12
No Yes Coccidioides posadasii str. Silveira   22 12
No Yes Coccidioides immitis RMSCC 3703   18 12
No Yes Coccidioides immitis RMSCC 2394   21 12
No Yes Coccidioides immitis H538.4   22 12
No Yes Ajellomyces dermatitidis ER-3   24 12
No Yes Histoplasma capsulatum H143   23 12
No Yes Histoplasma capsulatum H88   23 12
No Yes Histoplasma capsulatum G186AR   25 13
No Yes Aspergillus fumigatus A1163   24 12
No Yes Candida albicans WO-1   19 11
No Yes Saccharomyces cerevisiae UC5   20 11
No Yes Saccharomyces cerevisiae PW5   17 9
No Yes Saccharomyces cerevisiae FL100   8 4
No Yes Saccharomyces cerevisiae CLIB324   9 5
No Yes Saccharomyces cerevisiae CBS7960   18 10
No Yes Saccharomyces cerevisiae YJM269   14 8
No Yes Saccharomyces cerevisiae T7   20 11
No Yes Saccharomyces cerevisiae FostersB   16 10
No Yes Saccharomyces cerevisiae FostersO   17 11
No Yes Saccharomyces cerevisiae VL3   18 10
No Yes Saccharomyces cerevisiae Vin13   16 9
No Yes Saccharomyces cerevisiae LalvinQA23   20 11
No Yes Saccharomyces cerevisiae AWRI796   18 11
No Yes Saccharomyces cerevisiae Sigma1278b   20 11
No Yes Saccharomyces cerevisiae W303   20 11
No Yes Saccharomyces cerevisiae JAY291   20 11
No Yes Saccharomyces cerevisiae AWRI1631   12 7
No Yes Saccharomyces cerevisiae YPS163   4 2
No Yes Saccharomyces cerevisiae M22   2 1
No Yes Saccharomyces cerevisiae T73   5 3
No Yes Saccharomyces cerevisiae CLIB215   11 6
No Yes Saccharomyces cerevisiae Y10   2 1
No Yes Saccharomyces cerevisiae YJM789   20 11
No Yes Saccharomyces cerevisiae YJM789   20 11
No Yes Saccharomyces cerevisiae RM11-1a   20 11
No Yes Saccharomyces cerevisiae RM11-1a   20 11
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 20 11
No Yes Schizosaccharomyces pombe 972h-   25 13
No Yes Batrachochytrium dendrobatidis JEL423   35 20
No Yes Batrachochytrium dendrobatidis JAM81   37 20
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 28 14
No Yes Hordeum vulgare 22 Domesticated barley 84 54
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 39 20
No Yes Trypanosoma brucei Lister 427 v4.1   25 14
No Yes Neospora caninum Nc-Liverpool 6.2   32 17
No Yes Plasmodium falciparum HB3   18 11
No Yes Plasmodium falciparum Dd2   10 8
No Yes Homo sapiens 75_37 (old version GRC) Human 321 207
No Yes Homo sapiens (NCBI version) Human 141 79
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 78 40
No Yes Heliconius numata (Incomplete)   5 5
No Yes Loa loa v3.3 (Request) Eye worm 36 19
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 32 24
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 27 16
No Yes Moniliophthora perniciosa FA553 (Genome survey)   8 7
No Yes Encephalitozoon intestinalis (endoparasite)   7 4
No Yes Encephalitozoon cuniculi (endoparasite)   7 4
No Yes Picea sitchensis (Incomplete) Sitka spruce 3 2
No Yes Lotus japonicus (Early assembly)   24 15
No Yes Malus x domestica (Duplicate) Apple 55 32
No Yes Ricinus communis (Early assembly) Castor bean 30 15
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   74 40
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 43 23
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 43 23
No Yes Phoenix dactylifera (Early draft) Date palm 32 20
No Yes Homo sapiens 69_37 Human 98 57
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 83 45
No Yes Gorilla gorilla 69_3.1 Western gorilla 87 50
No Yes Pongo abelii 69_2 Sumatran orangutan 103 58
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 81 42
No Yes Macaca mulatta 69_1 Rhesus monkey 97 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 85 47
No Yes Otolemur garnettii 69_3 Small-eared galago 77 40
No Yes Microcebus murinus 69_1 Gray mouse lemur 58 32
No Yes Rattus norvegicus 69_3.4 Norway rat 71 39
No Yes Mus musculus 69_38 House mouse 80 41
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 63 37
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 70 39
No Yes Cavia porcellus 69_3 Domestic guinea pig 76 40
No Yes Oryctolagus cuniculus 69_2 Rabbit 97 53
No Yes Ochotona princeps 69 American pika 74 44
No Yes Tupaia belangeri 69 Northern tree shrew 61 35
No Yes Sus scrofa 69_10.2 Pig 82 48
No Yes Bos taurus 69_3.1 Cattle 75 39
No Yes Vicugna pacos 69_1 Alpaca 47 28
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 76 39
No Yes Mustela putorius furo 69_1.0 Domestic ferret 83 43
No Yes Ailuropoda melanoleuca 69_1 Giant panda 77 41
No Yes Canis familiaris 69_3.1 Dog 97 50
No Yes Felis catus 69 Domestic cat 55 32
No Yes Equus caballus 69_2 Horse 79 41
No Yes Myotis lucifugus 69_2.0 Little brown bat 70 37
No Yes Pteropus vampyrus 69_1 Large flying fox 74 39
No Yes Sorex araneus 69_1 European shrew 45 27
No Yes Erinaceus europaeus 69 Western European hedgehog 55 33
No Yes Procavia capensis 69_1 Cape rock hyrax 68 39
No Yes Loxodonta africana 69_3 African savanna elephant 77 41
No Yes Echinops telfairi 69 Small Madagascar hedgehog 68 41
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 60 36
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 40 22
No Yes Macropus eugenii 69_1.0 Tammar wallaby 64 37
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 71 39
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 83 43
No Yes Ornithorhynchus anatinus 69_5 Platypus 59 35
No Yes Petromyzon marinus 69_7.0 Sea lamprey 39 24
No Yes Meleagris gallopavo 69_2 Turkey 73 40
No Yes Gallus gallus 69_2 Chicken 71 37
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 70 36
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 76 39
No Yes Anolis carolinensis 69_2.0 Green anole 79 42
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 78 40
No Yes Latimeria chalumnae 69_1 Coelacanth 74 41
No Yes Gadus morhua 69_1 Atlantic cod 86 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 85 48
No Yes Takifugu rubripes 69_4 Torafugu 81 45
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 88 48
No Yes Oryzias latipes 69_1 Japanese medaka 78 43
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 85 47
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 79 42
No Yes Danio rerio 69_9 Zebrafish 93 50
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 36 22
No Yes Ciona intestinalis 69 Vase tunicate 40 25
No Yes Drosophila melanogaster 69_5 Fruit fly 43 24
No Yes Caenorhabditis elegans 69_215 Roundworm 40 21
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 20 11
No Yes Arabidopsis thaliana 10 Thale cress 46 23
No Yes 3_Below_base_of_euphotic (meta-genome)   2 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   66896 35953
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   1158 658
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   5100 2791
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   62068 34120
No Yes Global Ocean Sampling Expedition (GOS)   108 83
No Yes PDB chains (SCOP 1.75) (PDB)   4 2
No Yes Protein Data Bank (all PDB sequenc)   70 36
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   84 84
No Yes TargetDB (Targets)   142 88

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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