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  Home > Genomes > Monodelphis domestica 76_5 > Complement control module/SCR domain domains


Complement control module/SCR domain superfamily domain assignments
in
Monodelphis domestica 76_5

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Monodelphis domestica 76_5 has 292 significant domains in 53 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMODP00000000366   1.18e-16   662-719   Complement control module/SCR domain  
ENSMODP00000002693   1.89e-16   134-196   Complement control module/SCR domain  
  0.0000000000000181   75-137   Complement control module/SCR domain  
  0.0000000526   22-88   Complement control module/SCR domain  
ENSMODP00000002718   1.17e-17   112-184   Complement control module/SCR domain  
  0.00000000000000904   173-236   Complement control module/SCR domain  
  0.0000000000000105   235-300   Complement control module/SCR domain  
  0.0000000000000472   425-488   Complement control module/SCR domain  
  0.00000000000122   482-539   Complement control module/SCR domain  
  0.0000000000747   51-116   Complement control module/SCR domain  
  0.000000000773   299-371   Complement control module/SCR domain  
  0.00264   361-418   Complement control module/SCR domain  
ENSMODP00000002786   2.22e-17   160-232   Complement control module/SCR domain  
  6.12e-16   221-293   Complement control module/SCR domain  
  0.00000000000000764   281-344   Complement control module/SCR domain  
  0.000000000000391   34-101   Complement control module/SCR domain  
  0.00000000000126   95-170   Complement control module/SCR domain  
ENSMODP00000002814   1.57e-17   82-154   Complement control module/SCR domain  
  2.36e-17   526-597   Complement control module/SCR domain  
  0.00000000000000183   143-210   Complement control module/SCR domain  
  0.00000000000000417   275-336   Complement control module/SCR domain  
  0.0000000000000132   340-407   Complement control module/SCR domain  
  0.000000000000132   396-459   Complement control module/SCR domain  
  0.000000000000403   214-277   Complement control module/SCR domain  
  0.00000000000931   466-536   Complement control module/SCR domain  
  0.0000000756   22-86   Complement control module/SCR domain  
  0.000000131   583-632   Complement control module/SCR domain  
ENSMODP00000003024   0.00000000428   32-93   Complement control module/SCR domain  
ENSMODP00000003854   6.25e-16   503-576   Complement control module/SCR domain  
  0.00000000000000195   319-386   Complement control module/SCR domain  
  0.000000000000113   374-439   Complement control module/SCR domain  
  0.000000000000126   560-626   Complement control module/SCR domain  
  0.000000000000292   256-328   Complement control module/SCR domain  
  0.000000000000528   442-514   Complement control module/SCR domain  
  0.000000000000764   684-749   Complement control module/SCR domain  
  0.00000000000278   200-260   Complement control module/SCR domain  
  0.00000000000792   622-688   Complement control module/SCR domain  
ENSMODP00000003884   0.0000000000000108   195-268   Complement control module/SCR domain  
  0.0000000000000598   252-317   Complement control module/SCR domain  
  0.000000000000361   314-379   Complement control module/SCR domain  
ENSMODP00000003968   0.00000000000000445   184-255   Complement control module/SCR domain  
  0.0000000000000709   239-304   Complement control module/SCR domain  
ENSMODP00000004832   8.62e-20   2866-2935   Complement control module/SCR domain  
  2.5e-18   2179-2248   Complement control module/SCR domain  
  4.86e-18   2808-2872   Complement control module/SCR domain  
  5.98e-18   1996-2064   Complement control module/SCR domain  
  7.92e-18   1880-1949   Complement control module/SCR domain  
  2.92e-17   2750-2812   Complement control module/SCR domain  
  4.59e-17   3332-3399   Complement control module/SCR domain  
  9.73e-17   2925-2987   Complement control module/SCR domain  
  1.53e-16   2982-3046   Complement control module/SCR domain  
  1.67e-16   1822-1890   Complement control module/SCR domain  
  2.36e-16   3274-3343   Complement control module/SCR domain  
  3.06e-16   1717-1780   Complement control module/SCR domain  
  4.45e-16   2589-2656   Complement control module/SCR domain  
  4.86e-16   1938-2003   Complement control module/SCR domain  
  6.12e-16   2414-2484   Complement control module/SCR domain  
  0.00000000000000106   2473-2542   Complement control module/SCR domain  
  0.00000000000000115   2298-2366   Complement control module/SCR domain  
  0.00000000000000167   3098-3165   Complement control module/SCR domain  
  0.0000000000000108   3451-3510   Complement control module/SCR domain  
  0.0000000000000121   2532-2594   Complement control module/SCR domain  
  0.0000000000000139   2237-2302   Complement control module/SCR domain  
  0.0000000000000181   3042-3108   Complement control module/SCR domain  
  0.0000000000000431   464-531   Complement control module/SCR domain  
  0.0000000000000486   3156-3221   Complement control module/SCR domain  
  0.000000000000278   2707-2757   Complement control module/SCR domain  
  0.000000000000361   3392-3460   Complement control module/SCR domain  
  0.000000000000987   2357-2425   Complement control module/SCR domain  
  0.00000000000122   403-474   Complement control module/SCR domain  
  0.00000000000136   2053-2121   Complement control module/SCR domain  
  0.0000000000057   1665-1734   Complement control module/SCR domain  
  0.000000000195   2118-2186   Complement control module/SCR domain  
  0.000000000723   3216-3281   Complement control module/SCR domain  
  0.0000032   523-581   Complement control module/SCR domain  
  0.00043   754-814   Complement control module/SCR domain  
ENSMODP00000005139   5.26e-22   264-345   Complement control module/SCR domain  
  7.64e-17   83-149   Complement control module/SCR domain  
  0.00000000000103   205-267   Complement control module/SCR domain  
  0.00000000000103   140-214   Complement control module/SCR domain  
  0.000000000418   22-80   Complement control module/SCR domain  
ENSMODP00000005537   7.42e-21   3003-3074   Complement control module/SCR domain  
  6.34e-19   2648-2716   Complement control module/SCR domain  
  1.53e-18   2944-3014   Complement control module/SCR domain  
  2.97e-18   2705-2773   Complement control module/SCR domain  
  1.26e-17   2887-2955   Complement control module/SCR domain  
  1.34e-17   2764-2830   Complement control module/SCR domain  
  3.37e-16   3063-3132   Complement control module/SCR domain  
  0.00000000000000181   381-452   Complement control module/SCR domain  
  0.00000000000000208   2462-2529   Complement control module/SCR domain  
  0.00000000000000347   2819-2880   Complement control module/SCR domain  
  0.00000000000000553   2118-2187   Complement control module/SCR domain  
  0.00000000000000959   2589-2646   Complement control module/SCR domain  
  0.0000000000000111   3182-3250   Complement control module/SCR domain  
  0.0000000000000236   2400-2473   Complement control module/SCR domain  
  0.0000000000000351   905-965   Complement control module/SCR domain  
  0.0000000000000418   1423-1487   Complement control module/SCR domain  
  0.0000000000000472   1946-2007   Complement control module/SCR domain  
  0.0000000000000945   1594-1659   Complement control module/SCR domain  
  0.000000000000264   559-618   Complement control module/SCR domain  
  0.000000000000378   1078-1140   Complement control module/SCR domain  
  0.000000000000445   1772-1838   Complement control module/SCR domain  
  0.000000000000486   177-238   Complement control module/SCR domain  
  0.00000000000115   1249-1311   Complement control module/SCR domain  
  0.00000000000222   2536-2600   Complement control module/SCR domain  
  0.0000000000025   3241-3299   Complement control module/SCR domain  
  0.00000000000391   730-796   Complement control module/SCR domain  
  0.00000000000445   3122-3177   Complement control module/SCR domain  
  0.00000000027   2289-2349   Complement control module/SCR domain  
ENSMODP00000006104   0.000000000000278   186-258   Complement control module/SCR domain  
  0.000000000378   248-308   Complement control module/SCR domain  
  0.000000000675   60-122   Complement control module/SCR domain  
  0.000000139   128-184   Complement control module/SCR domain  
ENSMODP00000006838   0.0000000000000431   253-324   Complement control module/SCR domain  
  0.000000000000236   193-264   Complement control module/SCR domain  
  0.0000000000181   313-372   Complement control module/SCR domain  
ENSMODP00000006968   0.000000000153   1482-1556   Complement control module/SCR domain  
  0.00000514   1422-1488   Complement control module/SCR domain  
  0.0000167   1548-1605   Complement control module/SCR domain  
  0.00301   1358-1425   Complement control module/SCR domain  
ENSMODP00000008217   1.15e-16   56-124   Complement control module/SCR domain  
ENSMODP00000008678   3.06e-16   673-743   Complement control module/SCR domain  
  8.62e-16   227-297   Complement control module/SCR domain  
  0.00000000000000153   22-91   Complement control module/SCR domain  
  0.00000000000000181   286-355   Complement control module/SCR domain  
  0.00000000000000292   732-801   Complement control module/SCR domain  
  0.0000000000000153   364-426   Complement control module/SCR domain  
  0.0000000000000848   421-479   Complement control module/SCR domain  
  0.000000000000167   97-156   Complement control module/SCR domain  
  0.000000000000167   607-666   Complement control module/SCR domain  
  0.000000000000167   807-866   Complement control module/SCR domain  
  0.000000000000208   162-220   Complement control module/SCR domain  
  0.00000000000025   536-601   Complement control module/SCR domain  
  0.00000000000025   873-930   Complement control module/SCR domain  
ENSMODP00000010610   0.000000000000181   254-327   Complement control module/SCR domain  
  0.000000000000514   188-257   Complement control module/SCR domain  
ENSMODP00000013246   0.0000000000000181   623-688   Complement control module/SCR domain  
  0.000000000000839   750-809   Complement control module/SCR domain  
  0.00000000000153   682-744   Complement control module/SCR domain  
  0.0000000000403   270-331   Complement control module/SCR domain  
  0.000000000472   445-509   Complement control module/SCR domain  
ENSMODP00000014034   0.000000000000445   369-441   Complement control module/SCR domain  
  0.0000361   299-346   Complement control module/SCR domain  
ENSMODP00000014201   0.000000000104   41-102   Complement control module/SCR domain  
ENSMODP00000014831   0.00000000000000375   116-178   Complement control module/SCR domain  
  0.0000000000000278   263-322   Complement control module/SCR domain  
  0.0000000122   78-127   Complement control module/SCR domain  
ENSMODP00000015387   6.67e-17   1167-1228   Complement control module/SCR domain  
  0.00000000000000181   125-194   Complement control module/SCR domain  
  0.0000000000000114   71-142   Complement control module/SCR domain  
  0.0000000000000393   931-993   Complement control module/SCR domain  
  0.0000000000144   1109-1169   Complement control module/SCR domain  
  0.0000000000202   686-741   Complement control module/SCR domain  
  0.0000000000577   627-683   Complement control module/SCR domain  
  0.000000000102   567-636   Complement control module/SCR domain  
  0.000000000157   1041-1103   Complement control module/SCR domain  
  0.000000000511   801-856   Complement control module/SCR domain  
  0.000000000526   982-1043   Complement control module/SCR domain  
  0.000000000957   250-313   Complement control module/SCR domain  
  0.0000000012   888-940   Complement control module/SCR domain  
  0.0000000059   17-76   Complement control module/SCR domain  
  0.0000000378   192-250   Complement control module/SCR domain  
  0.0000000403   385-442   Complement control module/SCR domain  
  0.00000111   453-512   Complement control module/SCR domain  
  0.000114   507-570   Complement control module/SCR domain  
  0.00236   340-390   Complement control module/SCR domain  
ENSMODP00000015808   2.36e-20   453-530   Complement control module/SCR domain  
  5.49e-19   583-659   Complement control module/SCR domain  
  0.00000000000000393   206-268   Complement control module/SCR domain  
  0.000000000000102   333-389   Complement control module/SCR domain  
  0.00000000000621   273-327   Complement control module/SCR domain  
  0.00000000000629   526-586   Complement control module/SCR domain  
  0.0000000000236   395-450   Complement control module/SCR domain  
  0.00000000616   89-147   Complement control module/SCR domain  
  0.0000000341   155-214   Complement control module/SCR domain  
  0.00000524   37-95   Complement control module/SCR domain  
ENSMODP00000017639   7.42e-20   2159-2227   Complement control module/SCR domain  
  1.36e-18   2399-2467   Complement control module/SCR domain  
  4.45e-18   2216-2285   Complement control module/SCR domain  
  2.29e-17   2515-2586   Complement control module/SCR domain  
  1.35e-16   2456-2526   Complement control module/SCR domain  
  3.2e-16   2274-2347   Complement control module/SCR domain  
  0.00000000000000243   1973-2041   Complement control module/SCR domain  
  0.00000000000000417   2633-2690   Complement control module/SCR domain  
  0.00000000000000556   870-934   Complement control module/SCR domain  
  0.0000000000000153   7-71   Complement control module/SCR domain  
  0.0000000000000208   177-245   Complement control module/SCR domain  
  0.0000000000000378   2695-2763   Complement control module/SCR domain  
  0.0000000000000514   2331-2392   Complement control module/SCR domain  
  0.0000000000000621   2577-2638   Complement control module/SCR domain  
  0.0000000000000959   1220-1283   Complement control module/SCR domain  
  0.0000000000000973   2100-2163   Complement control module/SCR domain  
  0.000000000000133   695-764   Complement control module/SCR domain  
  0.000000000000148   1566-1635   Complement control module/SCR domain  
  0.000000000000162   1911-1984   Complement control module/SCR domain  
  0.00000000000025   352-412   Complement control module/SCR domain  
  0.000000000000283   1044-1108   Complement control module/SCR domain  
  0.000000000000459   1394-1457   Complement control module/SCR domain  
  0.00000000000337   525-587   Complement control module/SCR domain  
  0.0000000000567   1737-1801   Complement control module/SCR domain  
  0.0000000000612   2754-2811   Complement control module/SCR domain  
  0.000000000236   2053-2111   Complement control module/SCR domain  
ENSMODP00000017650   5.42e-19   2436-2504   Complement control module/SCR domain  
  8.62e-19   2677-2744   Complement control module/SCR domain  
  1.35e-17   2853-2922   Complement control module/SCR domain  
  6.61e-17   2493-2560   Complement control module/SCR domain  
  4.18e-16   2793-2858   Complement control module/SCR domain  
  0.00000000000000101   2735-2804   Complement control module/SCR domain  
  0.00000000000000104   2973-3041   Complement control module/SCR domain  
  0.00000000000000189   75-147   Complement control module/SCR domain  
  0.00000000000000723   2349-2411   Complement control module/SCR domain  
  0.0000000000000103   2608-2670   Complement control module/SCR domain  
  0.0000000000000148   2552-2619   Complement control module/SCR domain  
  0.0000000000000202   1814-1882   Complement control module/SCR domain  
  0.0000000000000229   1641-1703   Complement control module/SCR domain  
  0.0000000000000836   1290-1357   Complement control module/SCR domain  
  0.000000000000131   942-1005   Complement control module/SCR domain  
  0.000000000000135   2158-2231   Complement control module/SCR domain  
  0.000000000000195   599-659   Complement control module/SCR domain  
  0.00000000000025   2905-2967   Complement control module/SCR domain  
  0.000000000000324   1117-1180   Complement control module/SCR domain  
  0.000000000000459   253-315   Complement control module/SCR domain  
  0.00000000000082   2221-2290   Complement control module/SCR domain  
  0.00000000000181   1467-1531   Complement control module/SCR domain  
  0.00000000000297   1984-2047   Complement control module/SCR domain  
  0.0000000000057   424-492   Complement control module/SCR domain  
  0.0000000000125   2293-2360   Complement control module/SCR domain  
  0.0000000000126   3032-3090   Complement control module/SCR domain  
  0.000000000031   772-834   Complement control module/SCR domain  
ENSMODP00000017863   0.000000000598   740-799   Complement control module/SCR domain  
ENSMODP00000018869   0.000000000000473   82-144   Complement control module/SCR domain  
  0.00000000000292   514-570   Complement control module/SCR domain  
  0.00000000000987   451-508   Complement control module/SCR domain  
  0.000000528   22-91   Complement control module/SCR domain  
ENSMODP00000020014   0.00000000417   94-155   Complement control module/SCR domain  
  0.00000778   52-99   Complement control module/SCR domain  
ENSMODP00000020457   0.00000959   1-53   Complement control module/SCR domain  
ENSMODP00000022650   0.0000000000000903   369-439   Complement control module/SCR domain  
  0.0000000000737   315-372   Complement control module/SCR domain  
ENSMODP00000022662   0.000000000000132   394-468   Complement control module/SCR domain  
  0.000000000000598   326-397   Complement control module/SCR domain  
ENSMODP00000023090   0.00000000181   4-57   Complement control module/SCR domain  
ENSMODP00000024110   0.00000000000089   745-805   Complement control module/SCR domain  
  0.00000000000153   678-740   Complement control module/SCR domain  
  0.0000000000181   333-391   Complement control module/SCR domain  
ENSMODP00000024457   0.0000000000306   1244-1311   Complement control module/SCR domain  
  0.0000000126   1125-1180   Complement control module/SCR domain  
  0.0000000153   1175-1247   Complement control module/SCR domain  
  0.0000139   1044-1117   Complement control module/SCR domain  
ENSMODP00000025332   0.000000000111   3348-3406   Complement control module/SCR domain  
ENSMODP00000025382   0.00000000625   644-707   Complement control module/SCR domain  
  0.00000236   698-756   Complement control module/SCR domain  
ENSMODP00000025394   0.000000000000514   563-626   Complement control module/SCR domain  
  0.000000848   618-680   Complement control module/SCR domain  
ENSMODP00000026388   0.00000000000000737   253-311   Complement control module/SCR domain  
  0.0000000000000375   106-168   Complement control module/SCR domain  
  0.00000000222   69-121   Complement control module/SCR domain  
ENSMODP00000026983   8.62e-16   237-307   Complement control module/SCR domain  
  0.00000000000000153   32-101   Complement control module/SCR domain  
  0.00000000000000181   296-365   Complement control module/SCR domain  
  0.00000000000000181   543-612   Complement control module/SCR domain  
  0.00000000000000292   736-805   Complement control module/SCR domain  
  0.0000000000000153   374-436   Complement control module/SCR domain  
  0.0000000000000848   431-489   Complement control module/SCR domain  
  0.000000000000133   618-677   Complement control module/SCR domain  
  0.000000000000167   107-166   Complement control module/SCR domain  
  0.000000000000167   811-870   Complement control module/SCR domain  
  0.000000000000195   698-747   Complement control module/SCR domain  
  0.000000000000208   172-230   Complement control module/SCR domain  
  0.00000000000025   877-934   Complement control module/SCR domain  
ENSMODP00000027725   0.0000000000000027   123-186   Complement control module/SCR domain  
  0.000000000000118   477-535   Complement control module/SCR domain  
  0.000000000000278   537-599   Complement control module/SCR domain  
  0.00000000000223   604-663   Complement control module/SCR domain  
  0.0000000157   298-363   Complement control module/SCR domain  
ENSMODP00000033648   0.0000000000167   1113-1172   Complement control module/SCR domain  
ENSMODP00000034270   0.0000000000000012   275-346   Complement control module/SCR domain  
  0.000000000000181   337-407   Complement control module/SCR domain  
ENSMODP00000034659   0.0000000000179   730-799   Complement control module/SCR domain  
ENSMODP00000035184   0.00000000000431   1985-2045   Complement control module/SCR domain  
ENSMODP00000038258   0.000000000514   141-201   Complement control module/SCR domain  
ENSMODP00000038789   0.00000000000167   1265-1324   Complement control module/SCR domain  
ENSMODP00000039961   1.75e-17   160-223   Complement control module/SCR domain  
  5.24e-17   98-171   Complement control module/SCR domain  
  0.0000000000000089   222-284   Complement control module/SCR domain  
  0.00000000000005   34-108   Complement control module/SCR domain  
ENSMODP00000040142   0.000000000000528   23-84   Complement control module/SCR domain  
ENSMODP00000040190   0.00000000000000306   65-127   Complement control module/SCR domain  
  0.0000000000000167   122-180   Complement control module/SCR domain  
  0.000000000278   6-56   Complement control module/SCR domain  
ENSMODP00000040572   1.81e-16   17-78   Complement control module/SCR domain  
ENSMODP00000041133   6.12e-18   159-231   Complement control module/SCR domain  
  0.0000000000000197   282-344   Complement control module/SCR domain  
  0.0000000000000553   222-292   Complement control module/SCR domain  
  0.00000000000076   95-169   Complement control module/SCR domain  
  0.00000000256   31-91   Complement control module/SCR domain  
ENSMODP00000041198   0.00000000135   33-95   Complement control module/SCR domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   312829 312829
No Yes Homo sapiens 76_38 Human 1435 333
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 325 57
No Yes Gorilla gorilla 76_3.1 Western gorilla 448 88
No Yes Pongo abelii 76_2 Sumatran orangutan 317 56
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 308 50
No Yes Papio anubis 76 Olive baboon 302 59
No Yes Macaca mulatta 76_1 Rhesus monkey 637 126
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 608 130
No Yes Otolemur garnettii 76_3 Small-eared galago 278 49
No Yes Microcebus murinus 76_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 76_5.0 Norway rat 345 72
No Yes Mus musculus 76_38 House mouse 583 113
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 244 48
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 276 49
No Yes Cavia porcellus 76_3 Domestic guinea pig 316 64
No Yes Oryctolagus cuniculus 76_2 Rabbit 296 54
No Yes Ochotona princeps 76 American pika 235 42
No Yes Tupaia belangeri 76 Northern tree shrew 223 41
No Yes Sus scrofa 76_10.2 Pig 330 84
No Yes Bos taurus 76_3.1 Cattle 367 70
No Yes Ovis aries 76_3.1 Sheep 384 65
No Yes Vicugna pacos 76_1 Alpaca 237 37
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 76_1.0 Domestic ferret 338 59
No Yes Ailuropoda melanoleuca 76_1 Giant panda 376 68
No Yes Canis familiaris 76_3.1 Dog 524 79
No Yes Felis catus 76_6.2 Domestic cat 293 60
No Yes Equus caballus 76_2 Horse 670 77
No Yes Myotis lucifugus 76_2.0 Little brown bat 436 79
No Yes Pteropus vampyrus 76_1 Large flying fox 266 48
No Yes Sorex araneus 76_1 European shrew 180 32
No Yes Erinaceus europaeus 76 Western European hedgehog 185 40
No Yes Procavia capensis 76_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 76_3 African savanna elephant 368 73
No Yes Echinops telfairi 76 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 398 71
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 76_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 281 61
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 292 53
No Yes Ornithorhynchus anatinus 76_5 Platypus 317 73
No Yes Saccoglossus kowalevskii v3.0   436 89
No Yes Petromyzon marinus 76_7.0 Sea lamprey 116 22
No Yes Meleagris gallopavo 76_2 Turkey 235 53
No Yes Gallus gallus 76_4 Chicken 257 40
No Yes Anas platyrhynchos 76_1.0 Mallard 260 45
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 255 50
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 243 46
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 320 56
No Yes Anolis carolinensis 76_2.0 Green anole 288 48
No Yes Xenopus laevis African clawed frog 169 68
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 282 60
No Yes Latimeria chalumnae 76_1 Coelacanth 210 59
No Yes Lepisosteus oculatus 76 Spotted gar 357 61
No Yes Gadus morhua 76_1 Atlantic cod 209 51
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 385 69
No Yes Takifugu rubripes 76_4 Torafugu 1131 209
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 343 72
No Yes Oryzias latipes 76_1 Japanese medaka 280 61
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 267 52
No Yes Poecilia formosa 76 Amazon molly 273 52
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 372 77
No Yes Astyanax mexicanus 76 Mexican tetra 274 73
No Yes Danio rerio 76_9 Zebrafish 514 124
No Yes Oikopleura dioica   95 41
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 702 114
No Yes Ciona intestinalis 76 Vase tunicate 377 94
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 760 248
No Yes Adineta vaga   31 10
No Yes Octopus bimaculoides 280   214 50
No Yes Crassostrea gigas 22 Pacific oyster 252 106
No Yes Lottia gigantea Owl limpet 351 126
No Yes Helobdella robusta   57 11
No Yes Capitella sp. I   352 80
No Yes Danaus plexippus OGS1.0 Monarch butterfly 39 12
No Yes Heliconius melpomene Postman butterfly 40 12
No Yes Bombyx mori Domestic silkworm 35 11
No Yes Nasonia vitripennis Jewel wasp 42 10
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 69 16
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 60 19
No Yes Linepithema humile v1.1 Argentine ant 60 15
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 51 14
No Yes Solenopsis invicta v.2.2.3 Red fire ant 37 12
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 54 13
No Yes Atta cephalotes v1.1   55 15
No Yes Camponotus floridanus v3.3 Florida carpenter ant 53 13
No Yes Lucilia cuprina Australian sheep blowfly 44 9
No Yes Drosophila grimshawi 1.3   55 14
No Yes Drosophila willistoni 1.3   49 12
No Yes Drosophila pseudoobscura 2.13   53 15
No Yes Drosophila persimilis 1.3   46 13
No Yes Drosophila suzukii   53 14
No Yes Drosophila yakuba 1.3   56 17
No Yes Drosophila simulans 1.3   45 15
No Yes Drosophila sechellia 1.3   51 16
No Yes Drosophila melanogaster 76_5 Fruit fly 185 41
No Yes Drosophila erecta 1.3   56 17
No Yes Drosophila ananassae 1.3   48 11
No Yes Drosophila virilis 1.2   50 11
No Yes Drosophila mojavensis 1.3   47 11
No Yes Megaselia scalaris 22   19 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 56 18
No Yes Culex pipiens quinquefasciatus Southern house mosquito 49 16
No Yes Anopheles darlingi 22 American malaria mosquito 28 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 51 14
No Yes Tribolium castaneum 3.0 Red flour beetle 75 17
No Yes Pediculus humanus corporis (Early assembly) Human body louse 54 11
No Yes Acyrthosiphon pisum Pea aphid 45 10
No Yes Rhodnius prolixus 22   40 11
No Yes Daphnia pulex Common water flea 108 24
No Yes Strigamia maritima 22   123 38
No Yes Sarcoptes scabiei   48 13
No Yes Tetranychus urticae Two-spotted spider mite 87 25
No Yes Ixodes scapularis (Preliminary) Black-legged tick 90 40
No Yes Pristionchus pacificus   14 6
No Yes Meloidogyne incognita Southern root-knot nematode 73 27
No Yes Meloidogyne hapla   11 5
No Yes Onchocerca volvulus 22   50 14
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 42 18
No Yes Caenorhabditis japonica   45 13
No Yes Caenorhabditis brenneri   69 10
No Yes Caenorhabditis remanei   49 12
No Yes Caenorhabditis elegans 76_235 Roundworm 126 19
No Yes Caenorhabditis briggsae 2   45 8
No Yes Trichinella spiralis 22   28 10
No Yes Hymenolepis microstoma   11 5
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   9 2
No Yes Taenia solium Pork tapeworm 9 3
No Yes Schistosoma mansoni   6 3
No Yes Mnemiopsis leidyi Sea walnut 262 110
No Yes Acropora digitifera v1.0   343 78
No Yes Nematostella vectensis 1.0 Starlet sea anemone 120 33
No Yes Hydra vulgaris   48 17
No Yes Amphimedon queenslandica   273 48
No Yes Trichoplax adhaerens   7 2
No Yes Proterospongia sp. ATCC 50818   102 32
No Yes Monosiga brevicollis   30 12
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   128 20
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Thecamonas trahens ATCC 50062   227 38
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Perkinsus marinus ATCC 50983   2 1
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   2 2
No Yes Cryptosporidium parvum Iowa II   2 2
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   2 2
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   2 2
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   29 17
No Yes Guillardia theta CCMP2712 v1.0   32 13
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 359 80
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 155 34
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 60 15
No Yes Ascaris suum Victoria/Ghent Pig roundworm 43 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 53 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Plasmodium falciparum HB3   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1543 346
No Yes Homo sapiens (NCBI version) Human 592 109
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 294 55
No Yes Heliconius numata (Incomplete)   2 2
No Yes Loa loa v3.3 (Request) Eye worm 46 12
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 38 17
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 31 11
No Yes Homo sapiens 69_37 Human 414 76
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 322 54
No Yes Gorilla gorilla 69_3.1 Western gorilla 314 51
No Yes Pongo abelii 69_2 Sumatran orangutan 311 54
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 265 46
No Yes Macaca mulatta 69_1 Rhesus monkey 285 54
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 307 53
No Yes Otolemur garnettii 69_3 Small-eared galago 275 47
No Yes Microcebus murinus 69_1 Gray mouse lemur 206 43
No Yes Rattus norvegicus 69_3.4 Norway rat 299 55
No Yes Mus musculus 69_38 House mouse 291 58
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 212 40
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 236 47
No Yes Cavia porcellus 69_3 Domestic guinea pig 260 47
No Yes Oryctolagus cuniculus 69_2 Rabbit 290 51
No Yes Ochotona princeps 69 American pika 235 42
No Yes Tupaia belangeri 69 Northern tree shrew 223 41
No Yes Sus scrofa 69_10.2 Pig 266 54
No Yes Bos taurus 69_3.1 Cattle 301 54
No Yes Vicugna pacos 69_1 Alpaca 237 37
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 248 48
No Yes Mustela putorius furo 69_1.0 Domestic ferret 311 58
No Yes Ailuropoda melanoleuca 69_1 Giant panda 286 57
No Yes Canis familiaris 69_3.1 Dog 292 48
No Yes Felis catus 69 Domestic cat 175 42
No Yes Equus caballus 69_2 Horse 323 55
No Yes Myotis lucifugus 69_2.0 Little brown bat 396 71
No Yes Pteropus vampyrus 69_1 Large flying fox 266 48
No Yes Sorex araneus 69_1 European shrew 180 32
No Yes Erinaceus europaeus 69 Western European hedgehog 185 40
No Yes Procavia capensis 69_1 Cape rock hyrax 200 44
No Yes Loxodonta africana 69_3 African savanna elephant 293 55
No Yes Echinops telfairi 69 Small Madagascar hedgehog 224 40
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 204 43
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 188 30
No Yes Macropus eugenii 69_1.0 Tammar wallaby 189 42
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 212 45
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 279 52
No Yes Ornithorhynchus anatinus 69_5 Platypus 277 64
No Yes Petromyzon marinus 69_7.0 Sea lamprey 113 21
No Yes Meleagris gallopavo 69_2 Turkey 205 43
No Yes Gallus gallus 69_2 Chicken 252 42
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 250 47
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 269 48
No Yes Anolis carolinensis 69_2.0 Green anole 258 43
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 243 49
No Yes Latimeria chalumnae 69_1 Coelacanth 174 47
No Yes Gadus morhua 69_1 Atlantic cod 193 47
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 248 53
No Yes Takifugu rubripes 69_4 Torafugu 249 49
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 270 53
No Yes Oryzias latipes 69_1 Japanese medaka 257 51
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 267 52
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 312 58
No Yes Danio rerio 69_9 Zebrafish 338 71
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 360 70
No Yes Ciona intestinalis 69 Vase tunicate 368 92
No Yes Drosophila melanogaster 69_5 Fruit fly 55 15
No Yes Caenorhabditis elegans 69_215 Roundworm 49 10
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   135945 27302
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Protozoadb 2010_08 (Protozoadb)   24 24
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   10951 2334
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   84109 19171
No Yes Global Ocean Sampling Expedition (GOS)   50 31
No Yes NCBI viral sequences (Viral)   117 36
No Yes PDB chains (SCOP 1.75) (PDB)   82 40
No Yes Protein Data Bank (all PDB sequenc)   684 262
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1247 1247
No Yes TargetDB (Targets)   314 85
No Yes UniProt viral sequences (Viral)   446 138

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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